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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001102 ID=TCONS_00001102|Name=TCONS_00001102|organism=Clytia hemisphaerica|type=transcript|length=7537bpRun BLAST on NCBI protein sequence of TCONS_00001102-protein >TCONS_00001102-protein ID=TCONS_00001102-protein|Name=TCONS_00001102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1221bp MLSQKSSSTPCKNKLKISNTRTKAKDNETSTNKVKSAQAAKSANESDDIIRun BLAST on NCBI transcript from alignment at sc0000007:187485..207376- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001102 ID=TCONS_00001102|Name=TCONS_00001102|organism=Clytia hemisphaerica|type=transcript|length=19892bp|location=Sequence derived from alignment at sc0000007:187485..207376- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:187485..207376- >TCONS_00001102 ID=TCONS_00001102|Name=TCONS_00001102|organism=Clytia hemisphaerica|type=CDS|length=65988bp|location=Sequence derived from alignment at sc0000007:187485..207376- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00001102 vs. Swiss-Prot (Human)
Match: DNA2 (DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens GN=DNA2 PE=1 SV=3) HSP 1 Score: 568.155 bits (1463), Expect = 3.749e-174 Identity = 371/986 (37.63%), Postives = 567/986 (57.51%), Query Frame = 2
Query: 947 EERAVCHLRDDWFLMEIEDEDIAYVSNLNDACRRSILCNNSKEFITVFPNTLISGTTIASGITCERQAVLNTRFKT-EGQNEVMLVGTLTHEIFQWAISNNKFEMKDLVTKMNELLQQTKVLETLYTLDIDEQQIASKLKEYLPQVGLWKRNYLQDSQTS----------ADESKP-SITNI-----VDIEENVWSPYLGFKGKVDVSVEVKIHKRSRDKI-LAPLELKTGKMLSNLGSVEHRAQVTVYCLLMSERHHQPIDSGLLYYFKTNHLQQVPMPEQEKRAILIKRNDIARRL------TLEREEQQL---PALSRNKRICKWCPQKQTCLLHFKSRENGESWTS-------GIEEIYKNVLSNLKDEDFRYFSKWXXXXXXXXXXXCTANKTSYIWAKSSERRELQGVCFSHMLVCTS-DVTSDMKYHYTFERCVNHFNQQTPMNIIPLIAGDRVIVSRENNRVFNETTGYILQVSENEVIVSAHQKLQK-TDKVLYRIDKDEXXXXXXXXXXXXXXXFRVDSQLDNKLRQSIIHNKTPTV-----DIDPPVEENSE--ITGNLNEGQKQAICRCLQAKDFVMILGMPGSGKSTTTALLVQSLVCKGKKVLLTSYTHSAVDTILLKLLENGFTKFTRLGLPQRMHAKIRKYTAHE--QTKLFTKTHQIKEYYEKQSVFASTCLGVNNPILAKHHFDYCIVDEASQITQPVCIGAVRLADVFVLIGDHNQLPPLVQSEKARSRGMDVSLFKYLSDEQPEAVVTLNQQYRMNKHIMSLANTLVYQNKMKCGNESIANAVLSLPHFNDVNLD-------SD---MKRIIDPVHPVIFVDTDQRPDCEETIRSKKLVNTGEAILCEQIISSLLKAGLVESNLGVICPYRHQLKIIKDEISSLQNSKQIEVETIDKYQGKDKECIIVTFVRSNNKQEVGELLLDWRRINVALTRAKKKLILIGSRKTITGSTVLNQMLKILDDKK 3739
E + +C LR+DW + +E DI ++ D + + + ++ ++P+ LISGT+IAS I C R+AVL+ F++ + ML+GT+ HE+FQ AI NN F + L + +Q+ + L+ +Y L++ + +I ++++YLP W +++ + ++ +D SK S NI +DIEE++WSP G KGK+DV+V VKIH+ + K + PLELKTGK SN S+EHR+QV +Y LL ER P ++GLL Y KT + VP +KR +L RN +A L + R++ QL P + ++ CK+C Q C L+ ++ E +S IEE ++ LK YFS W +L LE+ + IW + E G C +++ + D +Y + F+ C + + + L+AGDRVIVS E +F + GY+ +++ V + L + L+R+D++E + TPL NL+ L ++ + KLR II + P + P +++ I LN+ Q+QA+ + L +KD+ +I+GMPG+GK+TT LV+ L G VLLTSYTHSAVD ILLKL + F RLG Q++H I+++T E ++K ++E Y Q + A+TC+G+N+PI ++ FD+CIVDEASQI+QP+C+G + + FVL+GDH QLPPLV + +AR+ GM SLFK L ++ AVV L QYRMN IMSL+N L Y+ K++CG++ +ANAV++L HF DV L+ SD + + +P +PV F++TD+ P E + + N EA L + S +KAG S++G+I PYR QLKII D ++ ++ +EV T+DKYQG+DK ++V+FVRSN VGELL DWRR+NVA+TRAK KLIL+G ++ L ++L L+ +K
Sbjct: 75 ENKELCILRNDWCSVPVEPGDIIHLEG--DCTSDTWIIDKDFGYLILYPDMLISGTSIASSIRCMRRAVLSETFRSSDPATRQMLIGTVLHEVFQKAI-NNSFAPEKLQELAFQTIQEIRHLKEMYRLNLSQDEIKQEVEDYLPSFCKWAGDFMHKNTSTDFPQMQLSLPSDNSKDNSTCNIEVVKPMDIEESIWSPRFGLKGKIDVTVGVKIHRGYKTKYKIMPLELKTGKE-SN--SIEHRSQVVLYTLLSQERRADP-EAGLLLYLKTGQMYPVPANHLDKRELLKLRNQMAFSLFHRISKSATRQKTQLASLPQIIEEEKTCKYCSQIGNCALYSRAVEQQMDCSSVPIVMLPKIEEETQH----LKQTHLEYFSLWCLMLTLESQSKDNKKNHQNIWLMPASEMEKSGSCIGNLIRMEHVKIVCDGQYLHNFQ-C-----KHGAIPVTNLMAGDRVIVSGEERSLFALSRGYVKEINMTTVTCLLDRNLSVLPESTLFRLDQEEKNCDIDTPLGNLSKLME-NTFVSKKLRDLIIDFREPQFISYLSSVLPHDAKDTVACILKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDNILLKLAKFKIG-FLRLGQIQKVHPAIQQFTEQEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKIFDFCIVDEASQISQPICLGPLFFSRRFVLVGDHQQLPPLVLNREARALGMSESLFKRL-EQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTDKVP-APEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLA--RSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNSEK 1037 The following BLAST results are available for this feature:
BLAST of TCONS_00001102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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