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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001077 ID=TCONS_00001077|Name=TCONS_00001077|organism=Clytia hemisphaerica|type=transcript|length=3726bp cttccattttcaaaccaaaaatgttttctcttttttttcgttttcatctt ccctatcttcatttttctcctgGCGTGTTTTCTGACAGCTTCCATGCTTG TTTGTGACATCCCCGATATATTCTTTCCATGGCAACCGCATGTCAAAATA CATTTCACGCATGCtcattcattaaaaaaaatatgttcttTAAAGACAAA AGATGGATCGATGCATTTCTTATTTCTTGATAGCTAACGCAGACGAGTTA GATAAAAAAACCAATTTGGCTTGTCTATGAAAGTCTATGAAAATAAGTCA TTAATATGGATGCAAGAGGGCTTAAATCATTTTTTCTAGTGCTCAAAata gataataaaaaaaaatgatctAAAAACGAGTAACAAAAAGGATCAATAGA GCGTTGCTAAGGTTGCAGTTTCCTTTATCCTTCAAAATAGTTGATGGAAT GGGATTCCATCATCAACTTTTGATTTCCTTCTTTCGGTAAATACATCATC ATGTTCAAAGAGCTTCAATAGTTCTGTCAGAAATAACCTTCTTGATGATA ATTTCTTTAGTCAATAATTTCTTCGACCCAAACTTTTGAAGAAACCAATT CACCACTCTGAAAGAAAATTCTATCTGTGGATGAACGAGTTTTAAAAGGA ATAATGGTTGCATGTGGCTTCCATAAAACGATCTTTCGATAGATTCGATA TCCCTTTCATCGACTTTGAAAACACGTTTAGTAGAAATGTGAGCATTTTG GCAATATTGTGGCAATTCATTTCGAAGATTTTGGACATGTTGAATATAAG ATTCCCTCGTTTCACCGTCATCGAAttctatttcaattttcaattcacCT TCGACCATGTTTTTCATCTGTGGTTCCAGTTCGACTGAATATTGGTCAGT TAGATCTATCCAATGTCGGTACTCGAATTCTTTCTGTTCTCTCAAAATGA TTTGTTGTTTTGCGCAGCNGTGGTTCCAATTCGACTGAATATTGGTCAGT TAGATCTATCCAATGTCGGTACTCGAATTCTTTCTGTTCTCTCCAAATGA TTTGTTGTTTTGCGCAGCACGAAGAACGAGGCTCAGTGACTTTACAAATT GTAATGACTTGTGGTTTCAAAGCagctagttctttcattttcgcATTCAA ATCTTCTTTTCGCTTTCTGTACCGACGACAACCCAAAATGAACGGTACAA TGGTTATATGAATGACCGAGCCAACTACCATATAATATGTCTTGCTGAAG TTGTGCGATGGTAAAgcgaatatcaaccaaccaaatgcatAGACTGAAAT ATTAAAAGAAGATTTGGTTTGTATTACGGTACTATAATGTAGTGTATAGT GTATTATTATTCCTACCGATAaacattgatgactttttcaaGACTGTCAA TGAACGAGCAACCTAAGTAACCGATGTCATTTTGAGAGATCGACTTTCCA ACGTTTACTTACCGATGTTGCACCTGTCTGCATTGTTGCCCTTTACGTTA AAGATCCTGTTGATATTTTCTTAAAGACCGGCTTGACAGTTGATTTGTTA ACTTTAAATTAAAATCACAATAAATATTCTTGGCAAAAAGTATTTCATGA AATTGATACTACTTACGAAAATAGTACAATCTCCAATGGTACCATTTGCC ACGTCGTTTTCTACACCATGGGTGTAGCCATATCATCATTGGGTAAAAGT AAAGGAAgaatatttgcaaaaaaattaagatataaAAACCTATCTCCTCT ACCAGCTCTACCTCCATCATCGACTCGATCTTTCTTCGATTTGTATACTA CTGTTTCTGTTAGAAGGCATCTTACACTTCCGTCTTTGACATGAAACTGT TTTTATCCTATTTGCTTATATATTTGTCAAACCAATTGTCTACGTGTATG ATTCGTCAACAAAAGGTTTTACAGAAATAAAATGTTATCATACAATAGAA TATATAATGATAAATTATGTTGTTTTAATCAAAGTGCGTTTTGTCTCTCT TGACTCTcgtacatttttttttatatttctcacTTCAGAACTGTcgtaaa aaatcaaccaaatctGAAAAATCGTTAGAGTAACAGAGTGAACTGAATTT ATCTTTTTAGCAACGTCAAAACAGTGAAGAATCGGACGTATTAACGCGTG AACGTTTGTGTTGTGGCTTGTCTTTATTTGAGGTCGTATTACGTCGTATC CAGTCCTTCTTGACGGATGACGCTTGGAAAGAACCGACGCCGGCAAACGG TGTGATGAGCATTGAAGAATGTCGAGAATTCCATCGATTGTGGAGCGCTA TACAGTTCATTTATTGCAAACCTCTGGGAGAACATGAAATCACCGTTGAG GAAActtttggtgaaagtttgaattGGGCAGGAATCACATTGATTATGCT ATTACGTCAAGAACATCGTTTCGAAGCTTTGGATTTCTGTAATCACATTC TACGAGTGCAAGAAATCGACTCTCGACAAGAAGTCGTGGCTGGCGTGgAT TTGAAACGTTTGATTCGTCGCATCAAAGAATATCAAACGATCAACAAGCA CATTATGGCCGTGTTGAAACGTTATTTGAAGTCTGGTGATTCTTCGTCAG TAGAGCAAGTGCGTTGCTTTCAACCTCCCATACATCAAGCCTTCATGTCA TCCGTCTGATGAGAAACACAGGAATGAGCTTGTTATGATTTCATAAGTGA TAGAAAGTTAGGTCAAACCTGTAACAGGTTGCTTGCTGGTCCAAAATATG CGGGACGCTGCTTCAGTCAGCTTCACGCATGTAAAATACAGGTTAAGCTT TGCAGGACAATAAGGTTCAAGGACCCTGGATATGGTTGTCCATCATAAGG AACATATAAATTAATTTGTACTATAGACAATtgaatttcatgaatttttt cctcgtttttcactacgttttttattttgatttttttgatttaataattt aaaattctGTTTTTTGTATTGCCATTTATTCGCATTTCGTTTTCAGCTGC ACTGTCTGTTTTTTCACCGCCACCTTTTTGTACCAGTCCACGATTTCTAC TCATTTCGCGTATCTAATATTTGGAACTTAATGTTTTTAAAGCACTGTTG TCGATTTTAGCCCAACTTTTGCACACGTCATCAGACGGTTTCTCTTGGAA ACAAAGGTAATTTATTTTAACGAATATCAAGATgtagattttatcttttt tttccttttgttaCTCTAAGTTTTATATATGAAATTACAATTTAAAATCA TCTATTAATTTTCGACTTCTAATTTGAGCACAAAGAATCGAAAATCGCCC AACTTTTCAGAtcgaagtttttaaaaattgatttggaAGGATCCATTTTT GTTGGTCGGATTTTGACAACTGTTATCACTAACCGATATTACAGTCGact ctctctttaattcgacgttctaatACTTCGTACCCTTattcttgaaaatc gaattgcaGGGCGTCAACTGTATTCGAATTTTCGATCATAAAAGTGCACC ACCCTCACAATCACCACCATATTTGTtcatttgtatatttttatatgttt tataAAACAAGTACTGCTACTATTATTGTTATTGTGACCTACTATTTCTC CCTACTATCATATCTTGCCTAATATTGAGTTTAGGTCATAGTTTTACAGA ATTAGAAAATAGAAAGGTCAGATTATATCTCATCTTTTTGCATAGGGGAA ATATAGAATATCATCTTGTAAAAATT Run BLAST on NCBI protein sequence of TCONS_00001077-protein >TCONS_00001077-protein ID=TCONS_00001077-protein|Name=TCONS_00001077-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MSIEECREFHRLWSAIQFIYCKPLGEHEITVEETFGESLNWAGITLIMLL RQEHRFEALDFCNHILRVQEIDSRQEVVAGVDLKRLIRRIKEYQTINKHI MAVLKRYLKSGDSSSVEQVRCFQPPIHQAFMSSV Run BLAST on NCBI transcript from alignment at sc0000007:1405146..1409277+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001077 ID=TCONS_00001077|Name=TCONS_00001077|organism=Clytia hemisphaerica|type=transcript|length=4132bp|location=Sequence derived from alignment at sc0000007:1405146..1409277+ (Clytia hemisphaerica) cttccattttcaaaccaaaaatgttttctcttttttttcgttttcatctt
ccctatcttcatttttctcctgGCGTGTTTTCTGACAGCTTCCATGCTTG
TTTGTGACATCCCCGATATATTCTTTCCATGGCAACCGCATGTCAAAATA
CATTTCACGCATGCtcattcattaaaaaaaatatgttcttTAAAGACAAA
AGATGGATCGATGCATTTCTTATTTCTTGATAGCTAACGCAGACGAGTTA
GATAAAAAAACCAATTTGGCTTGTCTATGAAAGTCTATGAAAATAAGTCA
TTAATATGGATGCAAGAGGGCTTAAATCATTTTTTCTAGTGCTCAAAata
gataataaaaaaaaatgatctAAAAACGAGTAACAAAAAGGATCAATAGA
GCGTTGCTAAGGTTGCAGTTTCCTTTATCCTTCAAAATAGTTGATGGAAT
GGGATTCCATCATCAACTTTTGATTTCCTTCTTTCGGTAAATACATCATC
ATGTTCAAAGAGCTTCANGGATTCCATCATCAACTTTTGGTTACCTTCTT
TCGGTAAATACATCATGTTCAAAGAGCTTCAATAGTTCTGTCAGAAATAA
CCTTCTTGATGATAATTTCTTTAGTCAATAATTTCTTCGACCCAAACTTT
TGAAGAAACCAATTCACCACTCTGAAAGAAAATTCTATCTGTGGATGAAC
GAGTTTTAAAAGGAATAATGGTTGCATGTGGCTTCCATAAAACGATCTTT
CGATAGATTCGATATCCCTTTCATCGACTTTGAAAACACGTTTAGTAGAA
ATGTGAGCATTTTGGCAATATTGTGGCAATTCATTTCGAAGATTTTGGAC
ATGTTGAATATAAGATTCCCTCGTTTCACCGTCATCGAAttctatttcaa
ttttcaattcacCTTCGACCATGTTTTTCATCTGTGGTTCCAGTTCGACT
GAATATTGGTCAGTTAGATCTATCCAATGTCGGTACTCGAATTCTTTCTG
TTCTCTCAAAATGATTTGTTGTTTTGCGCAGCNGTGGTTCCAATTCGACT
GAATATTGGTCAGTTAGATCTATCCAATGTCGGTACTCGAATTCTTTCTG
TTCTCTCCAAATGATTTGTTGTTTTGCGCAGCACGAAGAACGAGGCTCAG
TGACTTTACAAATTGTAATGACTTGTGGTTTCAAAGCagctagttctttc
attttcgcATTCAAATCTTCTTTTCGCTTTCTGTACCGACGACAACCCAA
AATGAACGGTACAATGGTTATATGAATGACCGAGCCAACTACCATATAAT
ATGTCTTGCTGAAGTTGTGCGATGGTAAAgcgaatatcaaccaaccaaat
gcatAGACTGAAATATTAAAAGAAGATTTGGTTTGTATTACGGTACTATA
ATGTAGTGTATAGTGTATTATTATTCCTACCGATAaacattgatgacttt
ttcaaGACTGTCAATGAACGAGCAACCTAAGTAACCGATGTCATTTTGAG
AGATCGACTTTCCAACGTTTACTTACCGATGTTGCACCTGTCTGCATTGT
TGCCCTTTACGTTAAAGATCCTGTTGATATTTTCTTAAAGACCGGCTTGA
CAGTTGATTTGTTAACTTTAAATTAAAATCACAATAAATATTCTTGGCAA
AAAGTATTTCATGAAATTGATACTACTTACGAAAATAGTACAATCTCCAA
TGGTACCATTTGCCACGTCGTTTTCTACACCATGGGTGTAGCCATATCAT
CATTGGGTAAAAGTAAAGGAAgaatatttgcaaaaaaattaagatataaA
AACCTATCTCCTCTACCAGCTCTACCTCCATCATCGACTCGATCTTTCTT
CGATTTGTATACTACTGTTTCTGTTAGAAGGCATCTTACACTTCCGTCTT
TGACATGAAACTGTTTTTATCCTATTTGCTTATATATTTGTCAAACCAAT
TGTCTACGTGTATGATTCGTCAACAAAAGGTTTTACAGAAATAAAATGTT
ATCATACAATAGAATATATAATGATAAATTATGTTGTTTTAATCAAAGTG
CGTTTTGTCTCTCTTGACTCTcgtacatttttttttatatttctcacTTC
AGAACTGTcgtaaaaaatcaaccaaatctGAAAAATCGTTAGAGTAACAG
AGTGAACTGAATTTATCTTTTTAGCAACGTCAAAACAGTGAAGAATCGGA
CGTATTAACGCGTGAACGTTTGTGTTGTGGCTTGTCTTTATTTGAGGTCG
TATTACGTCGTATCCAGTCCTTCTTGACGGATGACGCTTGGAAAGAACCG
ACGCCGGCAAACGGTGTGATGAGCATTGAAGAATGTCGAGAATTCCATCG
ATTGTGGAGCGCTATACAGTTCATTTATTGCAAACCTCTGGGAGAACATG
AAATCACCGTTGAGTAAGTTGAACGGTGTTTCTATTATTGTTCATACAAA
ATTATCAGTTAAAGATCTTACTTAATATGAgcttttttaccataaaaatc
tttttactgACCAGATTTAAAATGATGTTATTTCATTCAGGGAAActttt
ggtgaaagtttgaattGGGCAGGAATCACATTGATTATGCTATTACGTCA
AGAACATCGTTTCGAAGCTTTGGATTTCTGTAATCACATTCTACGAGTGC
AAGAAATCGACTCTCGACAAGAAGTCGTGGCTGGCGTGGTAAGAAtactt
ctcaattttttttcgtttcaacTCAAGACGTATGGATTCGTCCTCCTGCA
AATGAACTTAATaatatgaatttttgatttccttGAGACATGAGCATTAT
AATTCAACGGAATATTTGTAAAATCGTACCATAAGAAAGTCTGATTTACT
AGAAGCGCCACCGCCTTTTtgtaatgaaaaatattttttcttctttttga
caggATTTGAAACGTTTGATTCGTCGCATCAAAGAATATCAAACGATCAA
CAAGCACATTATGGCCGTGTTGAAACGTTATTTGAAGTCTGGTGATTCTT
CGTCAGTAGAGCAAGTGCGTTGCTTTCAACCTCCCATACATCAAGCCTTC
ATGTCATCCGTCTGATGAGAAACACAGGAATGAGCTTGTTATGATTTCAT
AAGTGATAGAAAGTTAGGTCAAACCTGTAACAGGTTGCTTGCTGGTCCAA
AATATGCGGGACGCTGCTTCAGTCAGCTTCACGCATGTAAAATACAGGTT
AAGCTTTGCAGGACAATAAGGTTCAAGGACCCTGGATATGGTTGTCCATC
ATAAGGAACATATAAATTAATTTGTACTATAGACAATtgaatttcatgaa
ttttttcctcgtttttcactacgttttttattttgatttttttgatttaa
taatttaaaattctGTTTTTTGTATTGCCATTTATTCGCATTTCGTTTTC
AGCTGCACTGTCTGTTTTTTCACCGCCACCTTTTTGTACCAGTCCACGAT
TTCTACTCATTTCGCGTATCTAATATTTGGAACTTAATGTTTTTAAAGCA
CTGTTGTCGATTTTAGCCCAACTTTTGCACACGTCATCAGACGGTTTCTC
TTGGAAACAAAGGTAATTTATTTTAACGAATATCAAGATgtagattttat
cttttttttccttttgttaCTCTAAGTTTTATATATGAAATTACAATTTA
AAATCATCTATTAATTTTCGACTTCTAATTTGAGCACAAAGAATCGAAAA
TCGCCCAACTTTTCAGAtcgaagtttttaaaaattgatttggaAGGATCC
ATTTTTGTTGGTCGGATTTTGACAACTGTTATCACTAACCGATATTACAG
TCGactctctctttaattcgacgttctaatACTTCGTACCCTTattcttg
aaaatcgaattgcaGGGCGTCAACTGTATTCGAATTTTCGATCATAAAAG
TGCACCACCCTCACAATCACCACCATATTTGTtcatttgtatatttttat
atgttttataAAACAAGTACTGCTACTATTATTGTTATTGTGACCTACTA
TTTCTCCCTACTATCATATCTTGCCTAATATTGAGTTTAGGTCATAGTTT
TACAGAATTAGAAAATAGAAAGGTCAGATTATATCTCATCTTTTTGCATA
GGGGAAATATAGAATATCATCTTGTAAAAATT Coding sequence (CDS) from alignment at sc0000007:1405146..1409277+ >TCONS_00001077 ID=TCONS_00001077|Name=TCONS_00001077|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0000007:1405146..1409277+ (Clytia hemisphaerica) ATGAGCATTGAAGAATGTCGAGAATTCCATCGATTGTGGAGCGCTATACA GTTCATTTATTGCAAACCTCTGGGAGAACATGAAATCACCGTTGAGGAAA cttttggtgaaagtttgaattGGGCAGGAATCACATTGATTATGCTATTA CGTCAAGAACATCGTTTCGAAGCTTTGGATTTCTGTAATCACATTCTACG AGTGCAAGAAATCGACTCTCGACAAGAAGTCGTGGCTGGCGTGgATTTGA AACGTTTGATTCGTCGCATCAAAGAATATCAAACGATCAACAAGCACATT ATGGCCGTGTTGAAACGTTATTTGAAGTCTGGTGATTCTTCGTCAGTAGA GCAAGTGCGTTGCTTTCAACCTCCCATACATCAAGCCTTCATGTCATCCG TCTGAATGAGCATTGAAGAATGTCGAGAATTCCATCGATTGTGGAGCGCT ATACAGTTCATTTATTGCAAACCTCTGGGAGAACATGAAATCACCGTTGA GGAAActtttggtgaaagtttgaattGGGCAGGAATCACATTGATTATGC TATTACGTCAAGAACATCGTTTCGAAGCTTTGGATTTCTGTAATCACATT CTACGAGTGCAAGAAATCGACTCTCGACAAGAAGTCGTGGCTGGCGTGgA TTTGAAACGTTTGATTCGTCGCATCAAAGAATATCAAACGATCAACAAGC ACATTATGGCCGTGTTGAAACGTTATTTGAAGTCTGGTGATTCTTCGTCA GTAGAGCAAGTGCGTTGCTTTCAACCTCCCATACATCAAGCCTTCATGTC ATCCGTCTGAATGAGCATTGAAGAATGTCGAGAATTCCATCGATTGTGGA GCGCTATACAGTTCATTTATTGCAAACCTCTGGGAGAACATGAAATCACC GTTGAGGAAActtttggtgaaagtttgaattGGGCAGGAATCACATTGAT TATGCTATTACGTCAAGAACATCGTTTCGAAGCTTTGGATTTCTGTAATC ACATTCTACGAGTGCAAGAAATCGACTCTCGACAAGAAGTCGTGGCTGGC GTGgATTTGAAACGTTTGATTCGTCGCATCAAAGAATATCAAACGATCAA CAAGCACATTATGGCCGTGTTGAAACGTTATTTGAAGTCTGGTGATTCTT CGTCAGTAGAGCAAGTGCGTTGCTTTCAACCTCCCATACATCAAGCCTTC ATGTCATCCGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001077-exon-sc0000007-1491911889:1405146..1405642 | TCONS_00001077-exon-sc0000007-1491911889:1405146..1405642 | Clytia hemisphaerica | exon |
TCONS_00001077-exon-sc0000007-1510915933:1405146..1405642 | TCONS_00001077-exon-sc0000007-1510915933:1405146..1405642 | Clytia hemisphaerica | exon |
TCONS_00001077-exon-sc0000007-1575043694:1405146..1405642 | TCONS_00001077-exon-sc0000007-1575043694:1405146..1405642 | Clytia hemisphaerica | exon |
TCONS_00001077-exon-sc0000007-1491911889:1405707..1407558 | TCONS_00001077-exon-sc0000007-1491911889:1405707..1407558 | Clytia hemisphaerica | exon |
TCONS_00001077-exon-sc0000007-1510915933:1405707..1407558 | TCONS_00001077-exon-sc0000007-1510915933:1405707..1407558 | Clytia hemisphaerica | exon |
TCONS_00001077-exon-sc0000007-1575043694:1405707..1407558 | TCONS_00001077-exon-sc0000007-1575043694:1405707..1407558 | Clytia hemisphaerica | exon |
TCONS_00001077-exon-sc0000007-1491911889:1407686..1407833 | TCONS_00001077-exon-sc0000007-1491911889:1407686..1407833 | Clytia hemisphaerica | exon |
TCONS_00001077-exon-sc0000007-1510915933:1407686..1407833 | TCONS_00001077-exon-sc0000007-1510915933:1407686..1407833 | Clytia hemisphaerica | exon |
TCONS_00001077-exon-sc0000007-1575043694:1407686..1407833 | TCONS_00001077-exon-sc0000007-1575043694:1407686..1407833 | Clytia hemisphaerica | exon |
TCONS_00001077-exon-sc0000007-1491911889:1408049..1409277 | TCONS_00001077-exon-sc0000007-1491911889:1408049..1409277 | Clytia hemisphaerica | exon |
TCONS_00001077-exon-sc0000007-1510915933:1408049..1409277 | TCONS_00001077-exon-sc0000007-1510915933:1408049..1409277 | Clytia hemisphaerica | exon |
TCONS_00001077-exon-sc0000007-1575043694:1408049..1409277 | TCONS_00001077-exon-sc0000007-1575043694:1408049..1409277 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000007 | supercontig | sc0000007:1405146..1409277 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR008081 | Cytoplasmic_FMR1-int |
Blast
BLAST of TCONS_00001077 vs. Swiss-Prot (Human)
Match: CYFP1 (Cytoplasmic FMR1-interacting protein 1 OS=Homo sapiens GN=CYFIP1 PE=1 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 6.934e-63 Identity = 101/179 (56.42%), Postives = 138/179 (77.09%), Query Frame = 2
Query: 2123 SEESDVLTRERLCCGLSLFEVVLRRIQSFLTDDAWKEPTPANGVMSIEECREFHRLWSAIQFIYCKPLGEHEITVEETFGESLNWAGITLIMLLRQEHRFEALDFCNHILRVQEIDSRQEVVAGVDLKRLIRRIKEYQTINKHIMAVLKRYLKSGD--SSSVEQVRCFQPPIHQAFMSS 2653
+ E D+LT+ERLCCGLS+FEV+L RI+SFL D W+ P P+NGVM ++EC EFHRLWSA+QF+YC P+G HE TVE+ FG+ L+WAG +I+LL Q+ RF LDFC H+L+VQ+ D + E++ V LK+++ RI+++Q +N I+ +L +YLKSGD + VE VRCFQPPIHQ+ SS
Sbjct: 1075 AREGDLLTKERLCCGLSMFEVILTRIRSFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEGTPVEHVRCFQPPIHQSLASS 1253
The following BLAST results are available for this feature:
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