TCONS_00001055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001055
Unique NameTCONS_00001055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2029

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001055 ID=TCONS_00001055|Name=TCONS_00001055|organism=Clytia hemisphaerica|type=transcript|length=2029bp
gtccggtgcgtccagtgtttcttaattttttgtttaataaatgtccggcg
tccaaaattccctgtatgcaacaccggactgacaccagaATTCATCCAGA
ATTAtcaacaaaacaaccaaaacttCCAAATCAGTACCTGGATCTTTTGA
AATTGCTTCAGTAATGGAACAGGTACAAAGATGATGAGACATTTCTTTTT
GTCCCCAACGTCCAATTCTTTGGCACCAGTAATATATAACTCTCGGAGTT
GTGTTTTGAGGTCAGAATTGACCTCCAAGTCAAGAAGAGCTTCTCCAATG
GATTTCTCTAACTCATCTGGTGTACCATTGTTTGGTTTCACGACTTTGCC
GAACATGACTGGGTCTAAAACGAGCGAAATAGCGGGACTTTAGTAAATTT
TACCAACAAATTACTCTGTCGTATTCTAGCAAAATGAGTAAAACACTGAT
GGCATCTTCTTTTAATCTTTGAAAATCTGGTAATTCAATATTTTAGGAAA
GTTAGTTGAACCATTGATTTGCGAAATACGGCCAAGAATAAGTGATAAAT
GGCTTCCAAAAAGTTGTACCTTGGCAATAAGCCTTCCACTTAGTATCGAC
TTTAAAAAGACATTTTGAATGTCCTTGTAGAAAGTTGAGCGAGTCTGGTT
TGTCTCGATTACAGCTTTTTAGGTAGGTTCGAAAGTTTGGCAAAGCGAga
caaaaacaataataaatatGGCTACCATGCTCCTCACGCGTGTCTATATc
gtatcaaaaaaaattatttttcaattctcTTATGAATCGAACCTTCTTCA
ATAAGATTTTCGACCTTCTTTGTTCTTCCTTTATGGCTCGTAGTAAAGGA
GGTGGATTTTATGCTGTTAAGCGTGGCAGGAATATTGGAATTTACATGAC
ATGGGCAGAATGTGAAAGTCAAGTAAAGGGTTTTCATGGCGCAAGGTACA
AAAAGTTTGGCTCAGAACAAGAAGCACAAAGTTTCATAGATGAGGTTTCA
TCCAGCAATTCTTCACTTGGTGTTAGAAGAACACAGACTTTTAAAGCAAA
GTCACAAAACACTGcctTTCCAGGATCTGTTACAGCTCTATCTAAAAGAA
CCAAATTGATAGAAGCTAGAAGTTTGTCAACACAAGCCTCGTCCAGCTCC
ACATCCTCCAAGCCCGTTGTTTATACAGATGGTTGCTGCCGTGGTAACGG
TAGAAGTGGAGCCATCGGTGGAATCGGTGTTTATTGGGGACCAGATCATC
CTAGgaatATAAGTGAACCGTTACTAGTAGACGAGCCAACTAACCAGAAA
GCTGAACTGGAGGCCGCCATCAGAGCGATTGATTGTGCGATAGGAATGGG
TCTGGATGATCTTGAATTACGAACAGATAGTACATACACCATCAAATCAA
TGACGGAATGGATTCCACGTTGGGAGCGGAACGGATGGAAAACTTCCAAA
GGAACTGATGTTCTGAACAAAGAACAAATGATCCGGTTGAACGATTTATG
TAAACGGATTGATATAAAATGGACGCACGTTCGCGGACACAAAGGTATCC
ATGGCAACGAAGAAGCAGATCGATTGGCCAATGAAGGAGCAATGAAAACT
TGAAAACGAAGCGTGGTTGTAAAACGGCGACTAACGAACGTGGGATTTTC
CTTAGTGTCACTCATGGTGTAATGTTGGAAATTCTGTCaaattccaaata
aataaatgaagaaGGACTCGCCTACTTTCAGTTATGTTACCTGACAGCTT
CAAATGACAATGTTAAAGacaatttaaacagtattactTGTAAAAGGACA
TTACAGTGTGCCCGAAAGAAAATGGGACGGATTTTATAAATTTAGTatct
ttatttatttaaattttgttcGACTTACCTACCTAGAAACACTGTAGTTT
TTGTTAATGTTTACCATTTGCAATACGGTGTTTTGTCCTCGTTGTGGACA
ATTGTATATCATCCACAAATGCTCTGCtgagaaagaaaaacttttaaata
acaATAATATAGGAACTTTAGCATCATCG
Run BLAST on NCBI

protein sequence of TCONS_00001055-protein

>TCONS_00001055-protein ID=TCONS_00001055-protein|Name=TCONS_00001055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MNRTFFNKIFDLLCSSFMARSKGGGFYAVKRGRNIGIYMTWAECESQVKG
FHGARYKKFGSEQEAQSFIDEVSSSNSSLGVRRTQTFKAKSQNTAFPGSV
TALSKRTKLIEARSLSTQASSSSTSSKPVVYTDGCCRGNGRSGAIGGIGV
YWGPDHPRNISEPLLVDEPTNQKAELEAAIRAIDCAIGMGLDDLELRTDS
TYTIKSMTEWIPRWERNGWKTSKGTDVLNKEQMIRLNDLCKRIDIKWTHV
RGHKGIHGNEEADRLANEGAMKT
Run BLAST on NCBI

transcript from alignment at sc0000007:1106025..1116755+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001055 ID=TCONS_00001055|Name=TCONS_00001055|organism=Clytia hemisphaerica|type=transcript|length=10731bp|location=Sequence derived from alignment at sc0000007:1106025..1116755+ (Clytia hemisphaerica)
gtccggtgcgtccagtgtttcttaattttttgtttaataaatgtccggcg
tccaaaattccctgtatgcaacaccggactgacaccagaATTCATCCAGA
ATTAtcaacaaaacaaccaaaacttCCAAATCAGTACCTGGATCTTTTGA
AATTGCTTCAGTAATGGAACAGGTACAAAGATGATGAGACATTTCTTTTT
GTCCCCAACGTCCAATTCTTTGGCACCAGTAATATATAACTCTCGGAGTT
GTGTTTTGAGGTCAGAATTGACCTCCAAGTCAAGAAGAGCTTCTCCAATG
GATTTCTCTAACTCATCTGGTGTACCATTGTTTGGTTTCACGACTTTGCC
GAACATGACTGGGTCTAAAACGAGCGAAATAGCGGGACTTTAGTAAATTT
TACCAACAAATTACTCTGTCGTATTCTAGCAAAATGAGTAAAACACTGAT
GGCATCTTCTTTTAATCTTTGAAAATCTGGTAATTCAATATTTTAGGAAA
GTTAGTTGAACCATTGATTTGCGAAATACGGCCAAGAATAAGTGATAAAT
GGCTTCCAAAAAGTTGTACCTTGGCAATAAGCCTTCCACTTAGTATCGAC
TTTAAAAAGACATTTTGAATGTCCTTGTAGAAAGTTGAGCGAGTCTGGTT
TGTCTCGATTACAGCTTTTTAGGTAGGTTCGAAAGTTTGGCAAAGCGAga
caaaaacaataataaatatGGCTACCATGCTCCTCACGCGTGTCTATATc
gtatcaaaaaaaattatttttcaattctcTTATGAATCGAACCTTCTTCA
ATAAGATTTTCGACCTTCTTTGTTCTTCCTTTATGGCTCGTAGTAAAGGA
GGTGGATTTTATGCTGTTAAGCGTGGCAGGAATATTGGAATTTACATGAC
ATGGTAAGGAATTTTCTATTGGTTATCCTACTACAGTCTTAGATTAAGAA
GGAGGTAGGCTACGtccatatcttccttcgttttttcaaaaactcctact
ctttgagagtaaggcctaaaagcctggagctgtctattgtgtagaatAAG
AAGGAGGGAGATCAGAGATAAATAAGTGTTTGGttaataccgtgagatcg
ggtaacttgcatcagtggaggaggctaacatgcatagggccattccagaa
tttgtctatAACAGAGGGCGGCgaacgacacaggatttccgagggcaaaa
gttttcaccaaaattcaaaatttctaaggcgagagaagaaaatgtatgaa
tttcctaggcaattgaattagaaaaggcaaaaaagagtggaatttccgat
gcattttgcaaaagtatatggatttttatcggaatttctgaccaccactg
gaaaagaaaagttatttccaaggctagaaaaaatttaaaaatgcacgtcg
tccgacggggggtaacaaaaattttctggaatggcccataatagccctca
aatgaatgacctgtctgttcattaaaatacaaaagttaacatcaaaacaa
aaatattagaGCAGAGccgcgagcggagctgcgtaccgtaagttggtcta
atgtcgacatccgtcttctaataggatgataggaacaatagaaactgagg
aaggtcggaatagctgattgacttttttgactagcGAGCGCGATGAGAGG
AAAAATCTTtagtctatcagtgatttcgaccttcttattattcctatcta
taaagaaggatgtcgaaattagaagacggatgtcgacattagaccaactt
acggtagttcatttgttttaaaattttgctgctttgattggtcagtcatt
tgatccGGCTATGCATGTTTCTCTCCACTGATTCAAGTTACCTTACTTCA
CGGTAAGATTGTCTGATTTTGTATGTGAAGTTTGGCtattcaatatattt
ttcaaccaTAACAGGtatataccgtaagttggtctaatatcgacatccct
cgtctaatttcgacaccattctttagagacaggaataatatgaaagcttg
aatcactgattgaaaaaggattattcctcccTGActactaagcaaagaaa
aacagtttcaacctttctatcaatttcagctgataaaaagggtgtcagaa
ttagaggaggggtgtcgacattagaccaagttacggtagccTATTGACCT
TACTTTTTCTCATCAATAACCCTCTGGAGATTAAGAACAGTCAGGGAact
ccctcaattgcggtatacttCAATTACAGTATACTGCAATAATTGCAGTA
GTTTTCATTTGTGgttagcctacaaaggcttaggcagccatcgaaaaatt
gttctgctCCCGCGCGCGTCATCGTATTGGTTGTAAAAAATACATGTGGG
CGGGCAGGCGGTTGGTCAGAAAGATTTCAgggtttttgaaaaacttcttc
TGATCAGTCTTTTTTGTGTGATTTCTTCCTACTTCTCTGCATTGGAAAGT
CAATGGAAAATATGATGCAGGTCGGTTGACATGAacactcgggtaactta
atgcatgtcccagaattgcattaatttttccgccccagttccagtcccta
aaccataacaaactatacattttcgcaagcgtatttggatgtagaatacc
gtattcggtgtaacttaaattccttctcagtataattagagatatgttaa
aaaaacctgattatgacgtcatgattaatgacgtcataaatacaaaaagt
tgaatatctcgagaaatataaatcaaaactttatgaaatttggaccagtg
ataaagtacattgagatgtttcaaaaactTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTGaaagtatttcccaaaattaatgacgtcagcaaaaattgc
aagaattcgaatttttgcgataaaatgctgacatcagcaaattttcaaat
tttttaaaaataattctcctcctcttgatgagttctatcattggtcaaaa
tttcataaagctttgagtattagttcttgagatattcaatttttaaaaat
tatgacgtcataaatagtgacgtcataatcatgttttcttaaaaaaactc
aaattctgttgagaaagaatttaagttacaccaaatacggtattctacat
ccaaatacgcttccaaaaatgtatagtttgttatggtttagggactggaa
ctggggcggaaaaattaatgcaattctgggacatgcattaagttacccga
gcagaaaaatattttaatggcCGCCTTATGACGGGTACATATAGTGCTGa
gtcgacaaagataaacaaagatcaACTGTAAAAAAACTTATAAGAAGAAA
GCTTgtctttttaaaaagaatctgATCTGAGTACTTGCTACAAAAAATAA
GAGGGTGATGGAagcaataaaattataaaaaaataagaaatacagAGGCC
CCATAGTGCCATTCAAATTCACATTCATTATTCTAAAAATAGGAAACCAA
CAAATTGACTatgaaattaaaaaaggcaagCCAGGTTTTCGGaggcaaaa
atccaaaattttgtgGCTTGAACTTAGCTCGATCATCAATGTTGGGCTAA
GATAATGTTTTGCTAtttccagacggtactaatcgataaattcgattatc
gaagtaatcgaacgaccacttatcgattaacaatcaaatgtcaagtacca
aaatttcaaaaaaattgtgagtattcgatcaatttcttaacaacccttcg
aACACTCGATAACCGTTTGAAGACTTTAtatgttattgattactttcgat
aactttgacaactttgataaccaattactatgatatatctttaagaaaaa
ccaaaaaaaatgacctaaattttcgccctgggtttcctcaagtaactcat
attgcgcgttctgattggtcggagaaaacgaaagtggttttcgcGCATGA
ATCGAGTGTTTTAATTAGCCGAAATAaacttggtttcagattattATGAC
ACGGTGCTactggaaacatatttgataaaatcgaaggCTGGAAGGTACTC
AATACaatcgaaggtattcaatatgattgaAGGTTATCAAAAAGTAatcg
aaatgattgaacaaatcgaaaaatggtcgaagaaaatgccataacctgga
gtcgagtgagtattcgatcaccgataaaatcgataggtggtcactgacta
ccttcgattattatcgatcattattgattacttcgatcacaatcgaacgt
tcgattagtaccgtctgttTATTTTGGCCCAAACATGACCCCGAAATGTT
CAGGGTATGTTTGGGCAAAATTGTAGGTTGTGAGTCAtcttatattattt
tttgaacttttgattatttttcctATTTCTATAAATTAATCCAAAGGCTA
CATATGTACATTTTCCTAGatactaaaaaataaaataaaaaatagcacTA
GCCGGTACCAGGCGttgcacgccggttaagctgtagctgaacgcactaaa
agtcctttgggtgttgaagctggcttaaaaaaacgatcaaataaaaaata
gaaatctctAGAACAtttaactctaaccttccccgcgtgtcttatctttt
aaccatatttggatcgtgtcccccgtgacataattttttgtttaggtcaa
aagttatcagaaagagcatcgtttactgtaccagtgtcgtttgaaacgac
tcagcaggtagttatttttctcgcttcgctcgcgttaaatatgccgtcca
gtttaaatgacaatttttcaggaaaaagtgggaaggtcaGAAAGAATATT
GCAACTCTTTGTTTTTATCAGATcgaaaaaaaagaagacaattctaagtt
gcttttttaaacccttgtcataacttttcgaatttaaacataaaaaatga
cgtacacactttttaacagtaacaacgacttgaatatttttataagaaga
aagaagttaactaattttttcttatgctttatatcaccctttgaagtttt
gaatgctgttgttgtccacaaactttttgatttttggcccagctagcttt
agcgtactgggcctttcattagcattctgcccNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTCAGATTGtgaaggatttgattggct
gttagaacatgattgacagaataaaaaacaattgaaatcgtctttattgg
ttaaaaacataaaaggagaaaatttaattaactattaaaactataagaac
ataacagATGTAGtgtgttttaagaaaaacaatgtaacaaaccgtaacaa
accttcttctctttaggaagatgttcttttaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGAGCAAgggactaaaagtcataattttaaaa
cacaaacaaagcgaaaacgaaagtggtgacacacagacacacaaagcacc
gctattaatatatagaatcTAAAAACACTGATAAAAAACAACATAActaa
ttatatatattttaagaTTATCCAGAGACATCTTGGACAATCTTGCCTGA
GGGTAACACCAATGATTCATGTTCACATACTTGACTGACTTTAGGCTCAA
AATATTTGTATATTGCTGTTTGGATGACATCAGGTAGAATGGCTACCTGA
TGTCATCCAAACAGCAATatacaaatattttgagattcgtTGTTGtagca
tttttttttctttcactgtcaattttttgttttgccatTGAAATAAGGag
gatttgaaaaattatcaaagatGCTTATGAATGCTGAGAAAGCACTTTAT
CGTTTATTTCACTCTCAGGCAAAAGAATGCGCtccaaaacttctaaaggg
atttatgaaaaaatatgaaaaactggtgctttttaatgaaatttaaacaT
ATATATTCGAAAACTATgaaaaattacctaaattttgagccatagatgaa
aaaatttgacctGACCCAACCTGaaccaaccttgaaaactaatttgaaga
acaGCTTCCAAAGAAAAAGATCAATGAGAGAACACCCATTTATATGTGtg
ggaattttttttactttacgtGTAATTAAAGCCTAACAAATCAAAGCGCT
ATCTTGGGAatcaaaatgacaaattttggttggttgattttggctgctgc
acaaatattttgtttcaagctttcaagttttaattatatATAACTGTCTT
TGGAACTTGATTGAGGTAACTCTCTTCTTTGATGCTGCAAATaaatcctg
tagatgactgatgttgtttttattgatagcttgatttcctagtttGACTA
ACTGACAAGTAGTCATTATCTTTTGTTGGCAAAGGAAGGTCGACGTTTGA
AAATACTTTATCATGCAGACTGAAGACACTTCTCCTATGGACAAAAAACA
TGTTGTAAGAGACATTGTAAGGCTACATATCGGTGTCAGACACAAAGAAC
TTACTTAAAAATAATAGAGATGCTCAAAATTGAGACACAGGTAAATTCCA
AAAGAAATAACCATCATTGCTCTGAAAATGATCATAAAATAAATTGGggg
ttgaaaaaaattaaaagatgtTAAATCTCTCTAATGTAGCTAAACATAAA
TCTTGCAATCCAAGCCACAATAATCTTCCAACGTGAATATCACTGAGTCA
ATAAACACAACaatttatttagatattatatgAACTTTTTAAAACACTTT
AAACTTTAGAGTTAAGGAAAAATCACCTACAATTAAAATAATTCTTTCCT
TTTTTAGGGCAGAATGTGAAAGTCAAGTAAAGGGTTTTCATGGCGCAAGG
TACAAAAAGTTTGGCTCAGAACAAGAAGCACAAAGTTTCATAGATGAGGT
GACGAATTAAACTAAAACCTCTTTTTATCAGGGAGGCtcttgatattttt
taaattataacTGACTACTTGATAATTGAGTTGCTATTAGTGGGGTTACA
GGTTTTGAACTTGTTTTGAAGGTTGTGGAGAGGAACAAGGGGTTATTTAA
AGCTCAAAGGAATTCTTTATTTTaaatagatttaaaaagatatGTCATAT
TAAAATACTCCTTTTCAAAGGTTTCATCCAGCAATTCTTCACTTGGTGTT
AGAAGAACACAGACTTTTAAAGCAAAGTCACAAAACACTGGTAAGAATTT
TCTCCTCCATACATCTGTTGATAGTTCTGTTGGTATGCTCAAGAGAAACA
TTGTAGCAAAGGTTTGGCATGctatcttctcaaaaatattagAAAGTTAT
AtcttgatgggttaaaatcaaccttcttcccaaatATAATTTTCGCTGTc
gaagaattcttattcagttGCTCTTCATAACTTTCTGTTTACGATAGCGG
CTTCCtgtcactttcaaaacttttcaaagtcttcCAAAGTCACACTCGAA
TGTCCAGCCACGATGGCCAGCCACGATGGCTAAATAGATCTTATTTATAA
TTCTTCTAAGCCATTTacttaattgtggttaaaaattgcaataCAATGTT
ATCTTCTTTCTCCTTTCTTTCATAGAATGAAAATCGTATCATTATTTCGG
CAGCTATCTTTTTTCCTTTAGAGTTTTTTATATGTATAGTGATTCGCTGG
ATTGGGACATGCAGCGTGCAACACTGCGCATACGGCTATAGATAATGctt
ctttcaaattcaatttgtGTTCTACACCATTATATGTAATGTCTTTACAA
TAGTACATAATATTatgaattgaaagaaaaataatcacaatcaaatttta
ttttttagcctTTCCAGGATCTGTTACAGCTCTATCTAAAAGAACCAAAT
GTAGGTACTCAAAAAATTTGCATTCCCTATAAGGATACCCTTATTAAGCT
CGACcaatatatataaaaataaaaattagaaaatatttaGATGTTGGAAT
ATTTGAATATTTAGTTGGGATTTCTTCGTTCATGACTATACAATAAGTAG
CtaattttaaagctattttctcCTTTCAGTGATAGAAGCTAGAAGTTTGT
CAACACAAGCCTCGTCCAGCTCCACATCCTCCAAGCCCGTTGTTTATACA
GATGGTTGCTGCCGTGGTAACGGTAGAAGTGGAGCCATCGGTGGAATCGG
TGTTTATTGGGGACCAGATCATCCTAGGTACGCAATAATGTGATAATATT
TTGGTTGAATGTATCCAGGAGTTGATTCTTTGCGTTTGTTTTGTTACCAT
ATCGTGTTTTGTGTTGACATTTAAAAATAAACTATTTCCTTTTCTTAGGG
GtttccttttttgatttttttcaggaatATAAGTGAACCGTTACTAGTAG
ACGAGCCAACTAACCAGAAAGCTGAACTGGAGGTTAGATGAGTACTGACA
TTATTTAATTCACGAATAGACCTTGTTCTCCACGTCAATGTGTAGAAATC
ATTATTTCAATGGATATGGCgatgtcaatattttttataggggtcagtag
cgtagacaggcgTGAAGGAACAATTgcttaggagagcagatttttacgaC
GAAGCACTTACCTACCActtacttgtggtataaaaacaTAGTTACTGTGC
TGTTTAAATCTCCTCTCCTAAACAAATATTCCTTCatccctgtctacgct
actagGGGTAATTAATTGTTTGATTGCATGATAAATTGCGTGGTGGATTT
TAATCGTAGCTGTTTAGAACATGCGGATCTTCACACTCCCCTGTATGTAT
GAGAAAGGAGTTGTCAGCCCAAGTCCGCCATAACTTTTCAGGCTTTAAGC
TTTTAGGGGGTTAACAAAGTTTAAGTTAAAACATGTAGTATATCTGATAT
TGGTTACAGAATGTGGTATCTTCTAACATAAATGTCAATGCAATGAGTCG
GGGGTTTTTATAGGGAGATTAGGGAGGCTTTTCACACTATGGCTGTTATA
TAATATTCCATTACTTTGTATCCTTCTTTTGCAATATCCAGGCCGCCATC
AGAGCGATTGATTGTGCGATAGGAATGGGTCTGGATGATCTTGAATTACG
AACAGATAGTACATACACCATCAAATGTAAGAAAATCTCATCATATTTAT
GACAGTGAAAGTCCTTATGAATTGCTTCAAACTCATCAAAACTCAATCTC
AAATTGTTGCTGCTAAATTGTACCACGTTGATCTCGACATCATAAGGTAG
TATGAAACACCTTAAGatattgataatttgataaGCTGTAGACCTTTGGT
TTAACAAATGGTATAGACTTCTTCAAAAGTACAAAGGTTTTGTATCTCTT
CTTTCCAGCAATGACGGAATGGATTCCACGTTGGGAGCGGAACGGATGGA
AAACTTCCAAAGGAACTGATGTTCTGAACAAAGAACAAATGATCCGGTTG
AACGATTTATGTAAACGGATTGATATAAAATGGGTGAGGAGTTTTgcata
aaaacaattattctacaaaaattcaaaattccaaAGGGGTTTAAACCTGC
ATTTCCAGCCACACAGGGATGGACCTcatcaacagggggtatacggtttt
tttctggNGGgtttacagcatttccagccacacagtgatggacctcctca
acaggggtatacgttttttttctgcaaaagcccaagttgaaaaattgaaa
gaaccAGGACTCTTGGCATGATGCTTGGGTTCAGTTGCACACCCTTtcga
tttccttttttttaatcaaaaagcCCTGACCAGGACTTATTAGGACCTCC
TATTAGCTAACTTTGAAGCAGATTCACACTATTTTTATGGTTCGTTTGCT
GACTTTAATACACCGTTCATTTAGACGCACGTTCGCGGACACAAAGGTAT
CCATGGCAACGAAGAAGCAGATCGATTGGCCAATGAAGGAGCAATGAAAA
CTTGAAAACGAAGCGTGGTTGTAAAACGGCGACTAACGAACGTGGGATTT
TCCTTAGTGTCACTCATGGTGTAATGTTGGAAATTCTGTCaaattccaaa
taaataaatgaagaaGGACTCGCCTACTTTCAGTTATGTTACCTGACAGC
TTCAAATGACAATGTTAAAGacaatttaaacagtattactTGTAAAAGGA
CATTACAGTGTGCCCGAAAGAAAATGGGACGGATTTTATAAATTTAGTat
ctttatttatttaaattttgttcGACTTACCTACCTAGAAACACTGTAGT
TTTTGTTAATGTTTACCATTTGCAATACGGTGTTTTGTCCTCGTTGTGGA
CAATTGTATATCATCCACAAATGCTCTGCtgagaaagaaaaacttttaaa
taacaATAATATAGGAACTTTAGCATCATCG

Coding sequence (CDS) from alignment at sc0000007:1106025..1116755+

>TCONS_00001055 ID=TCONS_00001055|Name=TCONS_00001055|organism=Clytia hemisphaerica|type=CDS|length=7398bp|location=Sequence derived from alignment at sc0000007:1106025..1116755+ (Clytia hemisphaerica)
ATGAATCGAACCTTCTTCAATAAGATTTTCGACCTTCTTTGTTCTTCCTT
TATGGCTCGTAGTAAAGGAGGTGGATTTTATGCTGTTAAGCGTGGCAGGA
ATATTGGAATTTACATGACATGGGCAGAATGTGAAAGTCAAGTAAAGGGT
TTTCATGGCGCAAGGTACAAAAAGTTTGGCTCAGAACAAGAAGCACAAAG
TTTCATAGATGAGGTTTCATCCAGCAATTCTTCACTTGGTGTTAGAAGAA
CACAGACTTTTAAAGCAAAGTCACAAAACACTGcctTTCCAGGATCTGTT
ACAGCTCTATCTAAAAGAACCAAATTGATAGAAGCTAGAAGTTTGTCAAC
ACAAGCCTCGTCCAGCTCCACATCCTCCAAGCCCGTTGTTTATACAGATG
GTTGCTGCCGTGGTAACGGTAGAAGTGGAGCCATCGGTGGAATCGGTGTT
TATTGGGGACCAGATCATCCTAGgaatATAAGTGAACCGTTACTAGTAGA
CGAGCCAACTAACCAGAAAGCTGAACTGGAGGCCGCCATCAGAGCGATTG
ATTGTGCGATAGGAATGGGTCTGGATGATCTTGAATTACGAACAGATAGT
ACATACACCATCAAATCAATGACGGAATGGATTCCACGTTGGGAGCGGAA
CGGATGGAAAACTTCCAAAGGAACTGATGTTCTGAACAAAGAACAAATGA
TCCGGTTGAACGATTTATGTAAACGGATTGATATAAAATGGACGCACGTT
CGCGGACACAAAGGTATCCATGGCAACGAAGAAGCAGATCGATTGGCCAA
TGAAGGAGCAATGAAAACTTGAATGAATCGAACCTTCTTCAATAAGATTT
TCGACCTTCTTTGTTCTTCCTTTATGGCTCGTAGTAAAGGAGGTGGATTT
TATGCTGTTAAGCGTGGCAGGAATATTGGAATTTACATGACATGGGCAGA
ATGTGAAAGTCAAGTAAAGGGTTTTCATGGCGCAAGGTACAAAAAGTTTG
GCTCAGAACAAGAAGCACAAAGTTTCATAGATGAGGTTTCATCCAGCAAT
TCTTCACTTGGTGTTAGAAGAACACAGACTTTTAAAGCAAAGTCACAAAA
CACTGcctTTCCAGGATCTGTTACAGCTCTATCTAAAAGAACCAAATTGA
TAGAAGCTAGAAGTTTGTCAACACAAGCCTCGTCCAGCTCCACATCCTCC
AAGCCCGTTGTTTATACAGATGGTTGCTGCCGTGGTAACGGTAGAAGTGG
AGCCATCGGTGGAATCGGTGTTTATTGGGGACCAGATCATCCTAGgaatA
TAAGTGAACCGTTACTAGTAGACGAGCCAACTAACCAGAAAGCTGAACTG
GAGGCCGCCATCAGAGCGATTGATTGTGCGATAGGAATGGGTCTGGATGA
TCTTGAATTACGAACAGATAGTACATACACCATCAAATCAATGACGGAAT
GGATTCCACGTTGGGAGCGGAACGGATGGAAAACTTCCAAAGGAACTGAT
GTTCTGAACAAAGAACAAATGATCCGGTTGAACGATTTATGTAAACGGAT
TGATATAAAATGGACGCACGTTCGCGGACACAAAGGTATCCATGGCAACG
AAGAAGCAGATCGATTGGCCAATGAAGGAGCAATGAAAACTTGAATGAAT
CGAACCTTCTTCAATAAGATTTTCGACCTTCTTTGTTCTTCCTTTATGGC
TCGTAGTAAAGGAGGTGGATTTTATGCTGTTAAGCGTGGCAGGAATATTG
GAATTTACATGACATGGGCAGAATGTGAAAGTCAAGTAAAGGGTTTTCAT
GGCGCAAGGTACAAAAAGTTTGGCTCAGAACAAGAAGCACAAAGTTTCAT
AGATGAGGTTTCATCCAGCAATTCTTCACTTGGTGTTAGAAGAACACAGA
CTTTTAAAGCAAAGTCACAAAACACTGcctTTCCAGGATCTGTTACAGCT
CTATCTAAAAGAACCAAATTGATAGAAGCTAGAAGTTTGTCAACACAAGC
CTCGTCCAGCTCCACATCCTCCAAGCCCGTTGTTTATACAGATGGTTGCT
GCCGTGGTAACGGTAGAAGTGGAGCCATCGGTGGAATCGGTGTTTATTGG
GGACCAGATCATCCTAGgaatATAAGTGAACCGTTACTAGTAGACGAGCC
AACTAACCAGAAAGCTGAACTGGAGGCCGCCATCAGAGCGATTGATTGTG
CGATAGGAATGGGTCTGGATGATCTTGAATTACGAACAGATAGTACATAC
ACCATCAAATCAATGACGGAATGGATTCCACGTTGGGAGCGGAACGGATG
GAAAACTTCCAAAGGAACTGATGTTCTGAACAAAGAACAAATGATCCGGT
TGAACGATTTATGTAAACGGATTGATATAAAATGGACGCACGTTCGCGGA
CACAAAGGTATCCATGGCAACGAAGAAGCAGATCGATTGGCCAATGAAGG
AGCAATGAAAACTTGAATGAATCGAACCTTCTTCAATAAGATTTTCGACC
TTCTTTGTTCTTCCTTTATGGCTCGTAGTAAAGGAGGTGGATTTTATGCT
GTTAAGCGTGGCAGGAATATTGGAATTTACATGACATGGGCAGAATGTGA
AAGTCAAGTAAAGGGTTTTCATGGCGCAAGGTACAAAAAGTTTGGCTCAG
AACAAGAAGCACAAAGTTTCATAGATGAGGTTTCATCCAGCAATTCTTCA
CTTGGTGTTAGAAGAACACAGACTTTTAAAGCAAAGTCACAAAACACTGc
ctTTCCAGGATCTGTTACAGCTCTATCTAAAAGAACCAAATTGATAGAAG
CTAGAAGTTTGTCAACACAAGCCTCGTCCAGCTCCACATCCTCCAAGCCC
GTTGTTTATACAGATGGTTGCTGCCGTGGTAACGGTAGAAGTGGAGCCAT
CGGTGGAATCGGTGTTTATTGGGGACCAGATCATCCTAGgaatATAAGTG
AACCGTTACTAGTAGACGAGCCAACTAACCAGAAAGCTGAACTGGAGGCC
GCCATCAGAGCGATTGATTGTGCGATAGGAATGGGTCTGGATGATCTTGA
ATTACGAACAGATAGTACATACACCATCAAATCAATGACGGAATGGATTC
CACGTTGGGAGCGGAACGGATGGAAAACTTCCAAAGGAACTGATGTTCTG
AACAAAGAACAAATGATCCGGTTGAACGATTTATGTAAACGGATTGATAT
AAAATGGACGCACGTTCGCGGACACAAAGGTATCCATGGCAACGAAGAAG
CAGATCGATTGGCCAATGAAGGAGCAATGAAAACTTGAATGAATCGAACC
TTCTTCAATAAGATTTTCGACCTTCTTTGTTCTTCCTTTATGGCTCGTAG
TAAAGGAGGTGGATTTTATGCTGTTAAGCGTGGCAGGAATATTGGAATTT
ACATGACATGGGCAGAATGTGAAAGTCAAGTAAAGGGTTTTCATGGCGCA
AGGTACAAAAAGTTTGGCTCAGAACAAGAAGCACAAAGTTTCATAGATGA
GGTTTCATCCAGCAATTCTTCACTTGGTGTTAGAAGAACACAGACTTTTA
AAGCAAAGTCACAAAACACTGcctTTCCAGGATCTGTTACAGCTCTATCT
AAAAGAACCAAATTGATAGAAGCTAGAAGTTTGTCAACACAAGCCTCGTC
CAGCTCCACATCCTCCAAGCCCGTTGTTTATACAGATGGTTGCTGCCGTG
GTAACGGTAGAAGTGGAGCCATCGGTGGAATCGGTGTTTATTGGGGACCA
GATCATCCTAGgaatATAAGTGAACCGTTACTAGTAGACGAGCCAACTAA
CCAGAAAGCTGAACTGGAGGCCGCCATCAGAGCGATTGATTGTGCGATAG
GAATGGGTCTGGATGATCTTGAATTACGAACAGATAGTACATACACCATC
AAATCAATGACGGAATGGATTCCACGTTGGGAGCGGAACGGATGGAAAAC
TTCCAAAGGAACTGATGTTCTGAACAAAGAACAAATGATCCGGTTGAACG
ATTTATGTAAACGGATTGATATAAAATGGACGCACGTTCGCGGACACAAA
GGTATCCATGGCAACGAAGAAGCAGATCGATTGGCCAATGAAGGAGCAAT
GAAAACTTGAATGAATCGAACCTTCTTCAATAAGATTTTCGACCTTCTTT
GTTCTTCCTTTATGGCTCGTAGTAAAGGAGGTGGATTTTATGCTGTTAAG
CGTGGCAGGAATATTGGAATTTACATGACATGGGCAGAATGTGAAAGTCA
AGTAAAGGGTTTTCATGGCGCAAGGTACAAAAAGTTTGGCTCAGAACAAG
AAGCACAAAGTTTCATAGATGAGGTTTCATCCAGCAATTCTTCACTTGGT
GTTAGAAGAACACAGACTTTTAAAGCAAAGTCACAAAACACTGcctTTCC
AGGATCTGTTACAGCTCTATCTAAAAGAACCAAATTGATAGAAGCTAGAA
GTTTGTCAACACAAGCCTCGTCCAGCTCCACATCCTCCAAGCCCGTTGTT
TATACAGATGGTTGCTGCCGTGGTAACGGTAGAAGTGGAGCCATCGGTGG
AATCGGTGTTTATTGGGGACCAGATCATCCTAGgaatATAAGTGAACCGT
TACTAGTAGACGAGCCAACTAACCAGAAAGCTGAACTGGAGGCCGCCATC
AGAGCGATTGATTGTGCGATAGGAATGGGTCTGGATGATCTTGAATTACG
AACAGATAGTACATACACCATCAAATCAATGACGGAATGGATTCCACGTT
GGGAGCGGAACGGATGGAAAACTTCCAAAGGAACTGATGTTCTGAACAAA
GAACAAATGATCCGGTTGAACGATTTATGTAAACGGATTGATATAAAATG
GACGCACGTTCGCGGACACAAAGGTATCCATGGCAACGAAGAAGCAGATC
GATTGGCCAATGAAGGAGCAATGAAAACTTGAATGAATCGAACCTTCTTC
AATAAGATTTTCGACCTTCTTTGTTCTTCCTTTATGGCTCGTAGTAAAGG
AGGTGGATTTTATGCTGTTAAGCGTGGCAGGAATATTGGAATTTACATGA
CATGGGCAGAATGTGAAAGTCAAGTAAAGGGTTTTCATGGCGCAAGGTAC
AAAAAGTTTGGCTCAGAACAAGAAGCACAAAGTTTCATAGATGAGGTTTC
ATCCAGCAATTCTTCACTTGGTGTTAGAAGAACACAGACTTTTAAAGCAA
AGTCACAAAACACTGcctTTCCAGGATCTGTTACAGCTCTATCTAAAAGA
ACCAAATTGATAGAAGCTAGAAGTTTGTCAACACAAGCCTCGTCCAGCTC
CACATCCTCCAAGCCCGTTGTTTATACAGATGGTTGCTGCCGTGGTAACG
GTAGAAGTGGAGCCATCGGTGGAATCGGTGTTTATTGGGGACCAGATCAT
CCTAGgaatATAAGTGAACCGTTACTAGTAGACGAGCCAACTAACCAGAA
AGCTGAACTGGAGGCCGCCATCAGAGCGATTGATTGTGCGATAGGAATGG
GTCTGGATGATCTTGAATTACGAACAGATAGTACATACACCATCAAATCA
ATGACGGAATGGATTCCACGTTGGGAGCGGAACGGATGGAAAACTTCCAA
AGGAACTGATGTTCTGAACAAAGAACAAATGATCCGGTTGAACGATTTAT
GTAAACGGATTGATATAAAATGGACGCACGTTCGCGGACACAAAGGTATC
CATGGCAACGAAGAAGCAGATCGATTGGCCAATGAAGGAGCAATGAAAAC
TTGAATGAATCGAACCTTCTTCAATAAGATTTTCGACCTTCTTTGTTCTT
CCTTTATGGCTCGTAGTAAAGGAGGTGGATTTTATGCTGTTAAGCGTGGC
AGGAATATTGGAATTTACATGACATGGGCAGAATGTGAAAGTCAAGTAAA
GGGTTTTCATGGCGCAAGGTACAAAAAGTTTGGCTCAGAACAAGAAGCAC
AAAGTTTCATAGATGAGGTTTCATCCAGCAATTCTTCACTTGGTGTTAGA
AGAACACAGACTTTTAAAGCAAAGTCACAAAACACTGcctTTCCAGGATC
TGTTACAGCTCTATCTAAAAGAACCAAATTGATAGAAGCTAGAAGTTTGT
CAACACAAGCCTCGTCCAGCTCCACATCCTCCAAGCCCGTTGTTTATACA
GATGGTTGCTGCCGTGGTAACGGTAGAAGTGGAGCCATCGGTGGAATCGG
TGTTTATTGGGGACCAGATCATCCTAGgaatATAAGTGAACCGTTACTAG
TAGACGAGCCAACTAACCAGAAAGCTGAACTGGAGGCCGCCATCAGAGCG
ATTGATTGTGCGATAGGAATGGGTCTGGATGATCTTGAATTACGAACAGA
TAGTACATACACCATCAAATCAATGACGGAATGGATTCCACGTTGGGAGC
GGAACGGATGGAAAACTTCCAAAGGAACTGATGTTCTGAACAAAGAACAA
ATGATCCGGTTGAACGATTTATGTAAACGGATTGATATAAAATGGACGCA
CGTTCGCGGACACAAAGGTATCCATGGCAACGAAGAAGCAGATCGATTGG
CCAATGAAGGAGCAATGAAAACTTGAATGAATCGAACCTTCTTCAATAAG
ATTTTCGACCTTCTTTGTTCTTCCTTTATGGCTCGTAGTAAAGGAGGTGG
ATTTTATGCTGTTAAGCGTGGCAGGAATATTGGAATTTACATGACATGGG
CAGAATGTGAAAGTCAAGTAAAGGGTTTTCATGGCGCAAGGTACAAAAAG
TTTGGCTCAGAACAAGAAGCACAAAGTTTCATAGATGAGGTTTCATCCAG
CAATTCTTCACTTGGTGTTAGAAGAACACAGACTTTTAAAGCAAAGTCAC
AAAACACTGcctTTCCAGGATCTGTTACAGCTCTATCTAAAAGAACCAAA
TTGATAGAAGCTAGAAGTTTGTCAACACAAGCCTCGTCCAGCTCCACATC
CTCCAAGCCCGTTGTTTATACAGATGGTTGCTGCCGTGGTAACGGTAGAA
GTGGAGCCATCGGTGGAATCGGTGTTTATTGGGGACCAGATCATCCTAGg
aatATAAGTGAACCGTTACTAGTAGACGAGCCAACTAACCAGAAAGCTGA
ACTGGAGGCCGCCATCAGAGCGATTGATTGTGCGATAGGAATGGGTCTGG
ATGATCTTGAATTACGAACAGATAGTACATACACCATCAAATCAATGACG
GAATGGATTCCACGTTGGGAGCGGAACGGATGGAAAACTTCCAAAGGAAC
TGATGTTCTGAACAAAGAACAAATGATCCGGTTGAACGATTTATGTAAAC
GGATTGATATAAAATGGACGCACGTTCGCGGACACAAAGGTATCCATGGC
AACGAAGAAGCAGATCGATTGGCCAATGAAGGAGCAATGAAAACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000598XLOC_000598Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001055-exon-sc0000007-1491911889:1106025..1106927TCONS_00001055-exon-sc0000007-1491911889:1106025..1106927Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1510915933:1106025..1106927TCONS_00001055-exon-sc0000007-1510915933:1106025..1106927Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1575043694:1106025..1106927TCONS_00001055-exon-sc0000007-1575043694:1106025..1106927Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1491911889:1113232..1113322TCONS_00001055-exon-sc0000007-1491911889:1113232..1113322Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1510915933:1113232..1113322TCONS_00001055-exon-sc0000007-1510915933:1113232..1113322Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1575043694:1113232..1113322TCONS_00001055-exon-sc0000007-1575043694:1113232..1113322Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1491911889:1113545..1113614TCONS_00001055-exon-sc0000007-1491911889:1113545..1113614Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1510915933:1113545..1113614TCONS_00001055-exon-sc0000007-1510915933:1113545..1113614Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1575043694:1113545..1113614TCONS_00001055-exon-sc0000007-1575043694:1113545..1113614Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1491911889:1114233..1114274TCONS_00001055-exon-sc0000007-1491911889:1114233..1114274Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1510915933:1114233..1114274TCONS_00001055-exon-sc0000007-1510915933:1114233..1114274Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1575043694:1114233..1114274TCONS_00001055-exon-sc0000007-1575043694:1114233..1114274Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1491911889:1114454..1114601TCONS_00001055-exon-sc0000007-1491911889:1114454..1114601Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1510915933:1114454..1114601TCONS_00001055-exon-sc0000007-1510915933:1114454..1114601Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1575043694:1114454..1114601TCONS_00001055-exon-sc0000007-1575043694:1114454..1114601Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1491911889:1114749..1114806TCONS_00001055-exon-sc0000007-1491911889:1114749..1114806Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1510915933:1114749..1114806TCONS_00001055-exon-sc0000007-1510915933:1114749..1114806Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1575043694:1114749..1114806TCONS_00001055-exon-sc0000007-1575043694:1114749..1114806Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1491911889:1115416..1115500TCONS_00001055-exon-sc0000007-1491911889:1115416..1115500Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1510915933:1115416..1115500TCONS_00001055-exon-sc0000007-1510915933:1115416..1115500Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1575043694:1115416..1115500TCONS_00001055-exon-sc0000007-1575043694:1115416..1115500Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1491911889:1115733..1115857TCONS_00001055-exon-sc0000007-1491911889:1115733..1115857Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1510915933:1115733..1115857TCONS_00001055-exon-sc0000007-1510915933:1115733..1115857Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1575043694:1115733..1115857TCONS_00001055-exon-sc0000007-1575043694:1115733..1115857Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1491911889:1116249..1116755TCONS_00001055-exon-sc0000007-1491911889:1116249..1116755Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1510915933:1116249..1116755TCONS_00001055-exon-sc0000007-1510915933:1116249..1116755Clytia hemisphaericaexon
TCONS_00001055-exon-sc0000007-1575043694:1116249..1116755TCONS_00001055-exon-sc0000007-1575043694:1116249..1116755Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001055-proteinTCONS_00001055-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1106025..1116755 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.1959	28.4935	33.0875	36.78	5.56422	5.21092	5.46836	6.58996	7.12416	7.83867	8.26744	5.45218	4.48562	6.74091	6.42347	4.94328	8.35061	8.63685	4.70285	3.22624	8.83448	8.72334	19.9072	23.0107	6.76519	7.8362	7.59634	4.25164	13.7438	16.9061
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002156RNaseH_domain
IPR017067RNase_H1_euk
IPR011320RNase_H1_N
IPR012337RNaseH-like_dom
IPR009027Ribosomal_L9/RNase_H1_N
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004523RNA-DNA hybrid ribonuclease activity
GO:0000287magnesium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
Blast
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BLAST of TCONS_00001055 vs. Swiss-Prot (Human)
Match: RNH1 (Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 1.185e-52
Identity = 111/257 (43.19%), Postives = 149/257 (57.98%), Query Frame = 2 
Query:  851 GGFYAVKRGRNIGIYMTWAECESQVKGFHGARYKKFGSEQEAQSFI-----DEVSSSNSSLGVRRTQTFKAKSQNTAFPG----SVTALSKRTKL-IEARXXXXXXXXXXXXXKPVVYTDGCCXXXXXXXXXXXXXVYWGPDHPRNISEPLLVDEPTNQKAELEAAIRAIDCAIGMGLDDLELRTDSTYTIKSMTEWIPRWERNGWKTSKGTDVLNKEQMIRLNDLCKRIDIKWTHVRGHKGIHGNEEADRLANEGA 1591
            G FYAV+RGR  G+++TW EC +QV  F  AR+KKF +E EA +F+      EVS  + +   + ++   +K       G    S    +K  K  +E     ++ + S      VVYTDGCC  NGR     GIGVYWGP HP N+    L    TNQ+AE+ AA +AI+ A    ++ L L TDS +TI  +T W+  W++NGWKTS G +V+NKE  + L  L + +DI+W HV GH G  GNEEADRLA EGA
Sbjct:   26 GMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVG-IRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGA 281
The following BLAST results are available for this feature:
BLAST of TCONS_00001055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNH11.185e-5243.19Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV... [more]
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