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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001021 ID=TCONS_00001021|Name=TCONS_00001021|organism=Clytia hemisphaerica|type=transcript|length=3725bpRun BLAST on NCBI protein sequence of TCONS_00001021-protein >TCONS_00001021-protein ID=TCONS_00001021-protein|Name=TCONS_00001021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=894bp MENDHAFEKCKSTLKSGETDYSYFDLSKLEDQRYGQLPFSIRVLLESVVRRun BLAST on NCBI transcript from alignment at sc0000007:761698..780652+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001021 ID=TCONS_00001021|Name=TCONS_00001021|organism=Clytia hemisphaerica|type=transcript|length=18955bp|location=Sequence derived from alignment at sc0000007:761698..780652+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:761698..780652+ >TCONS_00001021 ID=TCONS_00001021|Name=TCONS_00001021|organism=Clytia hemisphaerica|type=CDS|length=53700bp|location=Sequence derived from alignment at sc0000007:761698..780652+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001021 vs. Swiss-Prot (Human)
Match: ACOC (Cytoplasmic aconitate hydratase OS=Homo sapiens GN=ACO1 PE=1 SV=3) HSP 1 Score: 1218.37 bits (3151), Expect = 0.000e+0 Identity = 604/868 (69.59%), Postives = 718/868 (82.72%), Query Frame = 1
Query: 721 YFDLSKLEDQRYGQLPFSIRVLLESVVRNCDGFQVHQKDVETLLNWKETQHNGVEFPFRPARTLLQDFTGVPAVTDFAAMRDAVNRLGGDPSKINPLTPADMVIDHSIQVDHFRSEDALMKNQELEFSRNKERFQFLKWGSQAFKNLQIIPPGSGIVHQVNLEYLARVVFSEKGALYPDSLVGTDSHTTMINXXXXXXXXXXXXEAEAVMLGQVISMVVPKVIGYKITGTMNPIATSTDVVLTITKHLRQIGVVGKFVEFFGAGVASLSIADRATISNMCPEYGATVGFFPVDKMSLEYLRQSGRTEEHIKYIEDYMKANNLFRDYTNPEQDPVFTEIVELDLGSVVPSCSGPKRPHDRVPVSEMKTDFRSCLLNKVGFKGFGIVEEKTETIAPFIYEGKEYTLKHGXXXXXXXXXXXXXXXXXVMLGAGLLAKKAIESGLTTLPYIKTSVSPGSGVVTYYLKESGVDKYLEQLGFGIVGYGCMTCIGNSGPLPEAVAEVIEKNDLVVCGVLSGNRNFEGRIHPLTRANYLASPLLVIAYALAGTVDIDFEKEPIGRTEEGKEVFLRDIWPSRQEIQEMERKTVIPALFQEVYSKIQTGNPAWNNLETSASLLYPWESSSTYIQPPPFFNEMTLVVPEVESIANAAVLLNVGDSVTTDHISPAGMISRTSPAARYLGGLGLTPREFNSYGSRRGNYNVMARGTFANIRLVNKFMNKPGPKTKHWPSGDEMDIFDAAERYIKEKRSLIILAGKEYGCGSSRDWAAKGPWMQGIKAVIAESYERIHRSNLIGMGIAPLQYLSGDTTESLGLTGKESFTIEYPENLGAGSMVTVKVDDGRSFQVKARFDTDLEFVYYKNGGILNYMIRKIA 3324
+F+L+KLED RYG+LPFSIRVLLE+ +RNCD F V ++D+E +L+W TQH +E PF+PAR +LQDFTGVPAV DFAAMRDAV +LGGDP KINP+ PAD+VIDHSIQVD R D+L KNQ+LEF RN+ERF+FLKWGSQAF N++IIPPGSGI+HQVNLEYLARVVF + G YPDSLVGTDSHTTMI+GLGILGWGVGGIEAEAVMLGQ ISMV+P+VIGY++ G +P+ TSTD+VLTITKHLRQ+GVVGKFVEFFG GVA LSIADRATI+NMCPEYGAT FFPVD++S+ YL Q+GR EE +KYI+ Y++A +FRD+ +P QDP FT++VELDL +VVP CSGPKRP D+V VS+MK DF SCL K GFKGF + E FIY+ E+TL HGSVVI++ITSCTNTSNPSVMLGAGLLAKKA+++GL +PYIKTS+SPGSGVVTYYL+ESGV YL QLGF +VGYGCMTCIGNSGPLPE V E I + DLV GVLSGNRNFEGR+HP TRANYLASP LVIAYA+AGT+ IDFEKEP+G +G++VFL+DIWP+R EIQ +ER+ VIP +F+EVY KI+T N +WN L T + L+ W S STYI+ PPFF +TL + +SI +A VLLN+GDSVTTDHISPAG I+R SPAARYL GLTPREFNSYGSRRGN VMARGTFANIRL+N+F+NK P+T H PSG+ +D+FDAAERY + LI+LAGKEYG GSSRDWAAKGP++ GIKAV+AESYERIHRSNL+GMG+ PL+YL G+ ++LGLTG+E +TI PENL V VK+D G++FQ RFDTD+E Y+ NGGILNYMIRK+A
Sbjct: 21 FFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMA 888 The following BLAST results are available for this feature:
BLAST of TCONS_00001021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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