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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001006 ID=TCONS_00001006|Name=TCONS_00001006|organism=Clytia hemisphaerica|type=transcript|length=3079bpRun BLAST on NCBI protein sequence of TCONS_00001006-protein >TCONS_00001006-protein ID=TCONS_00001006-protein|Name=TCONS_00001006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=802bp MATDQNTHKSGPLKQQNKSHKHGRHRTKGQVDKSHKGKVDVKSLSKKNKNRun BLAST on NCBI transcript from alignment at sc0000007:630440..645717+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001006 ID=TCONS_00001006|Name=TCONS_00001006|organism=Clytia hemisphaerica|type=transcript|length=15278bp|location=Sequence derived from alignment at sc0000007:630440..645717+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:630440..645717+ >TCONS_00001006 ID=TCONS_00001006|Name=TCONS_00001006|organism=Clytia hemisphaerica|type=CDS|length=50589bp|location=Sequence derived from alignment at sc0000007:630440..645717+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001006 vs. Swiss-Prot (Human)
Match: TSR1 (Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1) HSP 1 Score: 675.626 bits (1742), Expect = 0.000e+0 Identity = 385/791 (48.67%), Postives = 530/791 (67.00%), Query Frame = 1
Query: 355 THKSGPLKQQNKSHKHGRHRTKGQVDKSHKGXXXXXXXXXXXXXXXXXX-RRHQAKQXXXXXXXXXXXXXXXXGTEHSPPHLIVIFPLSSNCNCEEALEYLVESDDTIIPIR---NENTTTIISPR--HRQRFQVIIPQRNFFSVLNAAKVADSFLFLHPANNEIDEIGQKCLTCILAQGLPTNIHAVQGLRNV--KKQGDVKKNIQKSLEKWMPSVKLHSLDSKQDGELVLRLLSNQKQKRIFYRENRPYIVADKVQFESNQDDESKGTLKISGFIRGQSLSVNRLVHLPQLGDFQLKKIDLPRDPYSM--------KRKDSNSNNMEGDEDNSMEEDVKTIAVADPSKQETLVTEAEVDPMDAEQTWPTEEEIKQAQDEATAQMETERKIKRVPKGTSEYQAAWIXXXXXXXXXXXXXXXXXXXXXXMQYXXXXXXXXXXXXXXXXXXFDTISVAATTVINDEKYDAQFDEDEEQRQLEKYRDEHENEMFPDEIDTPQDIDARVRFQKYRGLKSFRTSPWDPKENLPLDYARIFQFQNFNRTKKRIMKQLQDDED-CALGGWYVTIHVKDVPKVYYENRDTSDPLVVFGLIPYEQKMTVMNFVLKRHPSCGVPIKSKERLIFHVGYRMFSACPIFSQHTNSDKFKGERFLPHDAVTMATVYAPIFFPPAPVLVFTENC----ELLATGTVAGSNPDRVVVKKIVLSGHPFKINKKSSVVRYMFFSREDILWFKPVEVWTKYGRRGNIKEALGTHGHMKCVFDGQLKAQDTVCMNLFKRLFPKWTYDPNI 2664
H+ GPLKQQNK+HK GRHR +G + KG++ +K+LSKK + + +RH+A Q+RK K+E VL +KR+LG + PPH +++ PL S + EA++ L + D + + N ++ PR HR F P + VL+ AKVAD+ LFL D G CL+C+ AQGLPT AVQG+ + KKQ D +K + K++EK P KL LD++Q+ ++LR L+NQKQ+ + +R+ R Y+ A V F ++++ GTLKISG++RGQ+L+VNRL+H+ GDFQ+K+ID P DP+ + K D D + MEE +K + ADP +QE+L E DPM+ EQTWPTEEE+ +A+D E+ + +K+VPKGTS YQA WI D SG E D M++ + + + E++E++E+++T+++ + ++D+ YD + DE+ E + LEKY+ E EMFPDE+DTP+D+ AR+RFQKYRGLKSFRTSPWDPKENLP DYARIFQFQNF T+K I K++++ E A GWYVT+HV +VP E PL+ F L+P+EQKM+V+N V++R P P+K+KE LIFH G+R F A P+FSQHT +DK K +RFL D +ATVYAPI FPPA VL+F + L+ATG + +PDR+V+K++VLSGHPFKI K +VVRYMFF+RED+LWFKPVE+ TK+GRRG+IKE LGTHGHMKC FDG+LK+QDTV MNL+KR+FPKWTYDP +
Sbjct: 3 AHRPGPLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQLRKQKKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNELGNTQNFMLLCPRLKHRWFFTSARPG-DLHVVLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQGLPTYTLAVQGISGLPLKKQIDTRKKLSKAVEKRFPHDKLLLLDTQQEAGMLLRQLANQKQQHLAFRDRRAYLFAHAVDFVPSEENNLVGTLKISGYVRGQTLNVNRLLHIVGYGDFQMKQIDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVIPDPMEGEQTWPTEEELSEAKDFLK---ESSKVVKKVPKGTSSYQAEWILDGGSQSGGEGDEYEYDD----MEHEDFMEEESQDESSEEEEEYETMTIGES--VHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEKEVEGAEVGWYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMHSLIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYV 783 The following BLAST results are available for this feature:
BLAST of TCONS_00001006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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