TCONS_00000945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000945
Unique NameTCONS_00000945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000945 ID=TCONS_00000945|Name=TCONS_00000945|organism=Clytia hemisphaerica|type=transcript|length=3547bp
CGGGCTTCTCCATACAAAATGATTGTGAGATGTTTGTAAGCCACCCTAAT
GAATTGGGCGGTGGGCATGAATCAGTGTTCGTCGATAAGAATGGGCAGAT
GGAGGAAGCCAAAACACACATACAAGGACTAGCGAAAGACAGCGTCGAAC
ATCATCACAATGGTCCGGTTGACGgaccaccaatcaaatttcggacggac
gaacacgatttgcattctcttctTGGAGACGATGAAGTAGCGCCGTTCCA
CCCTCCCCACCATCATTCGTAcgacgaagaagaagaaggaggaATCACAC
GAGGTGACGAGGCTTTCGTGAAAACCATCCAAGAATTGCAAGATTCTGGT
TTGAAATTGCATTCTATTCATGAAGATGAAGTCACACACGATGAGCGAGG
ATTTCAACCACACCACGAAGAACGAACGTACCATCACGAAGATACCCCTG
CTGGTTACCACAATGTTTATGAATATCACCATGGTGATTTACATGAAGAT
GAGGGCCACCATGGTGGAGGACATCATCAAGGTCATCATGGAGGGCATGG
TCACGAAGAGGGGCATCACCATGAAGGTCACCACGACGAAGGGCACCACG
AAGAAGAGCATCATGGCGGACACGGTCACGAAGAACATGGAGAGCACCAT
GAGGAGGAGCACCACGAACACGGCCATGAGGAAGAGGGACACCATGGGGA
GCATCATGCAGCACCTCAAGATGTGGAGGAGGGTAGTGGAGATGTGACGG
AGGaccaaaagaagaagaagaagaagttaAAACATTATGGTTCTTATGCG
AGCAATGGAGAATCGAAGAAAGTGGAATTCAGTGAAGAAGAGAAAAACCC
TTATCATAATAAACAAGCTGAATCAGATGAAAAGACAAAAACGAAAGAGG
AGGAGGGAGAAGAAGCGAAAggagaaaaagtcaaagaagAGAAGGGGAAA
GCAGATAATTATGTATTCCTTCTTGGAAAATCAAACAAGAAACTGGATGA
AGGGAACCTACCAAACGTTTTCAAAGAGCTGGTGCATGATGCGAAAGCAT
TGACAGAAAAACTGAAGGAAAAGAAAGGGAGCAAAGAagaaacagaagaa
aaagaCACCAAATCGAAAAACCTCTCCAAGTTTGGTGAACTAAAGGATGA
CACCAAGGAAAGCCATGAAGAAAAAAGTGCAGAACAGCAAAATAACAGCA
AAAATCTTTCCCATTTCGGTCAGCTCAATCAAAATGATAAAGAGGGTACC
AAGATGCAATCACCTCATTCACAAACACAAGATGATTCTACAGAGCAAAC
AAAATCCAGTAATAAAAGTGATGAAAAAGAGCAAGAAAACCCCAAAGAAA
ACGAAAAGCTCAAATCTAAGCCAGTTGAGCAATCAAGAATAATCAACATG
CTGAAGAAATATATACAGCAGTCAAAAGCTAAGACAAAAGAGGCGAGTAA
GAAAGAAGGCAAGTTGACAATCGATTATACGTATCGAGACAAACAACCTC
AGATCAATGACTATGATTTGGGTGATCTAGGGGATACCAAGAAAAATCAA
AGTTCGTTTACCAAAGACAAGGACGTGGAGCGAGTAGCGCAACGAATCAT
CAATAAATTCACCACCAAATCAGGTGACCTTGATCTACCGAATGATGTTG
TGGTAGAGAAAGGTGATGAGAGCATCCTGAACAATCACGTCATGAATAAA
CCTACAAGTGCTCACAAGAAACAAGAAACTTGTTGTGGAACACACGCAGC
TACTATGCATCACACTGCTCCACAAGCACAGGAAATCCTTGTAGAGATGC
CTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCGCCCCCT
CCTCCTCCATCATGTCCAGCACCCTGTCATGCACCTGAAACACAACCCGC
ACCTGATCAACCCATCGAAGATCTTCCAAGCGTTGATGAGGAGCAAGAGA
AACTTCGAAAGTTATTGgagagaaaacaaaaattggATCAACTACAATCA
GAATATGAGCATGAATTGGACATCTTCAAGAGTGAACTGAACAAAGAAAA
GACTACCAAGTCACCACGCAAAGGAAAAACAACTTCCTCATCCTCGTCAA
AAGAAACTCCAGCACAAAAGGATGAAGAGAACCCTGACGatttgattttt
ccaaaagaaatgaaTGGGTGTGGTCAAGCACAATCTGTTGACAAGATGAA
GCAATGTTTGAAAGCAAATACTGAAGACGGGGAGGAAAAACCAGCACCTT
CCTTATCCAAGTCATCGGAGAAAGAATCCAAACCAACAGAATCCGTCACC
AAAGTCACCGGGAAACCCATTGAAAAACCCGCTGGAACACCGACACGCCC
GGTCGCTTATGATAAGGAAAAACAAGAGCAGGAAGCGGAGAAAGAGTACG
AAGAGTTCAAGCACCAAGCCAACGACAAACCCGACCAACATTTGAAAGTT
GAACATTTGAAGGAGAAAGATAAAATGGACCAGCCCGTGGAACAGGACGC
GGATTCTCAAAGTGTGGATATCTTGGGTAAAGATAAGCAGAAAAATGAAG
AACGAAAAGGGCAGGAGAAAAAGAAGGAAGATCAGGTTTTTGAAGAGGAA
GGAAAAACGCAGGACTCTTTGATGGCAAAACTACAGGACGATGAGAAGGA
GGATAAAAAGATTGAAAGGAAAGAACATTCGAAGGaggaagaaaatattt
cttcaaaGGAAGATTGCAAATCATCATCAAGTGAAAAAGTTATGGGTGGT
GGTTGCGGCGAGCTCATGATCACTTCCGATGAAGACCTTCTCAAACCTAA
AAACGAAAAGGATAAAGCAAAAATTATCAAACAAATTGCCATCTTACAGA
AAGCGCTGACTTCATATTACAAGAACACGAAATCGCCTTCTTCACCGACA
CCAGTAGTGCTGGTGCATGAAATTAACTTAGTAaacaatgaaaacaaaga
aagtgaaaaagaaacGAAACAATTGAATAAACAAATTAATGATCTACAAA
CTATGTTGaaagaacaaaaacaaagcGAATGTCAACCCATCATGACTAAA
GTCAAAGGGAAATTAATCCTTGACAAAAACTGCGACGACAAAAAGAAACG
CTCTCACGTTTCgaacaaaaaatggaaaaaatcacGTATTACTAAACTAA
GGAAACAATTGGGTAACATTAAATAAGGaggctttttttcattttcgctt
ttgtaaatttgtatatATTCTTAGATCTTAGATTACCGATTATTTTTGGA
AACAATTTGATGTCGGTCAAAATACCAATCCTCAAAATGTTTCTTACTAC
TTTCATAAATAGCCCTCTTCTACGtagcctgaaaaaaaaatttataaatg
aaaaatctctataaaaatataaaaatttaaaacaatgaggACTAGGAAAA
AAGCTTGGTATGAGAAGCAACTCGagttgaaaatgaaagtcaCTCTTGGG
AGTGTCAAAAGGAGGGAGCAACCTTAAAGAGTTATATTGTAACTATAAGG
TTGTAAGGTTGTCTAAGATCTATGACTTGGCATTTGGTAATTGCTAG
Run BLAST on NCBI

transcript from alignment at sc0000007:37747..41856+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000945 ID=TCONS_00000945|Name=TCONS_00000945|organism=Clytia hemisphaerica|type=transcript|length=4110bp|location=Sequence derived from alignment at sc0000007:37747..41856+ (Clytia hemisphaerica)
CGGGCTTCTCCATACAAAATGATTGTGAGATGTTTGTAAGCCACCCTAAT GAATTGGGCGGTGGGCATGAATCAGTGTTCGTCGATAAGAATGGGCAGAT GGAGGAAGCCAAAACACACATACAAGGACTAGCGAAAGACAGCGTCGAAC ATCATCACAATGGTCCGGTTGACGgaccaccaatcaaatttcggacggac gaacacgatttgcattctcttctTGGAGACGATGAAGGTTAGTGagattt ttctttcttcaacTGGTTGTATATTTGAAATGAGCATTCAGAATGATAAT CAAAAATTCGCGACAGCAANGCTGGTTGTATATTTGAAATGAGTATCAGA ATGATAATCAAAAATTCGCGACAGCAATGTCTCCAAAGCGCAAAACATTT CATTTCCGACGAGAAGAATTTACAAGAAAACCTGAAGAATTGAAGGAACA CGGCATCACATCTTTTGCTTGCGAGCAAtcttatatttttgttttgttcc ttCAGTAGCGCCGTTCCACCCTCCCCACCATCATTCGTAcgacgaagaag aagaaggaggaATCACACGAGGTGACGAGGCTTTCGTGAAAACCATCCAA GAATTGCAAGATTCTGGTTTGAAATTGCATTCTATTCATGAAGATGAAGT CACACACGATGGTAAGGACGACTTTTATTTGCCATTATAACATTTAAAAA GTAAACCACTCTCGTGAAATAATCAAAATCtcaatcagtattgaagatCA ATCAAGTTTGCCCGTCGTTTTACCTTCTCTCTCTCTATTCTCTTTTTACG TAGAGCGAGGATTTCAACCACACCACGAAGAACGAACGTACCATCACGAA GATACCCCTGCTGGTTACCACAATGTTTATGAATATCACCATGGTGATTT ACATGAAGATGAGGGCCACCATGGTGGAGGACATCATCAAGGTCATCATG GAGGGCATGGTCACGAAGAGGGGCATCACCATGAAGGTCACCACGACGAA GGGCACCACGAAGAAGAGCATCATGGCGGACACGGTCACGAAGAACATGG AGAGCACCATGAGGAGGAGCACCACGAACACGGCCATGAGGAAGAGGGAC ACCATGGGGAGCATCATGCAGCACCTCAAGATGTGGAGGAGGGTAGTGGA GATGTGACGGAGGaccaaaagaagaagaagaagaagttaAAACATTATGG TTCTTATGCGAGCAATGGAGAATCGAAGAAAGTGGAATTCAGTGAAGAAG AGAAAAACCCTTATCATAATAAACAAGGTATGAATGTGATGTACTTCTAG TGTTTTTAGATGGGGGTCAACTGTATCTTATTCGCTCATtaacaaattga ttttttgagtttttttgtcaGTAAATGGAAgagagagactttgaaaattg ACCGGCACATTTAATCTCATTTCTTAGAAGCTGAATCAGATGAAAAGACA AAAACGAAAGAGGAGGAGGGAGAAGAAGCGAAAggagaaaaagtcaaaga agAGAAGGGGAAAGCAGATAATTATGTATTCCTTCTTGGAAAATCAAACA AGAAACTGGATGAAGGGAACCTACCAAACGTTTTCAAAGAGCTGGTGCAT GATGCGAAAGCATTGACAGAAAAACTGAAGGAAAAGAAAGGGAGCAAAGA agaaacagaagaaaaagaCACCAAATCGAAAAACCTCTCCAAGTTTGGTG AACTAAAGGATGACACCAAGGAAAGCCATGAAGAAAAAAGTGCAGAACAG CAAAATAACAGCAAAAATCTTTCCCATTTCGGTCAGCTCAATCAAAATGA TAAAGAGGGTACCAAGATGCAATCACCTCATTCACAAACACAAGATGATT CTACAGAGCAAACAAAATCCAGTAATAAAAGTGATGAAAAAGAGCAAGAA AACCCCAAAGAAAACGAAAAGCTCAAATCTAAGCCAGTTGAGCAATCAAG AATAATCAACATGCTGAAGAAATATATACAGCAGTCAAAAGCTAAGACAA AAGAGGCGAGTAAGAAAGAAGGCAAGTTGACAATCGATTATACGTATCGA GACAAACAACCTCAGATCAATGACTATGATTTGGGTGATCTAGGGGATAC CAAGAAAAATCAAAGTTCGTTTACCAAAGACAAGGACGTGGAGCGAGTAG CGCAACGAATCATCAATAAATTCACCACCAAATCAGGTGACCTTGATCTA CCGAATGATGTTGTGGTAGAGAAAGGTGATGAGAGCATCCTGAACAATCA CGTCATGAATAAACCTACAAGTGCTCACAAGAAACAAGAAACTTGTTGTG GAACACACGCAGCTACTATGCATCACACTGCTCCACAAGCACAGGAAATC CTTGTAGAGATGCCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACC TCCACCGCCCCCTCCTCCTCCATCATGTCCAGCACCCTGTCATGCACCTG AAACACAACCCGCACCTGATCAACCCATCGAAGATCTTCCAAGCGTTGAT GAGGAGCAAGAGAAACTTCGAAAGTTATTGgagagaaaacaaaaattggA TCAACTACAATCAGAATATGAGCATGAATTGGACATCTTCAAGAGTGAAC TGAACAAAGAAAAGACTACCAAGTCACCACGCAAAGGAAAAACAACTTCC TCATCCTCGTCAAAAGAAACTCCAGCACAAAAGGATGAAGAGAACCCTGA CGatttgatttttccaaaagaaatgaaTGGGTGTGGTCAAGCACAATCTG TTGACAAGATGAAGCAATGTTTGAAAGCAAATACTGAAGACGGGGAGGAA AAACCAGCACCTTCCTTATCCAAGTCATCGGAGAAAGAATCCAAACCAAC AGAATCCGTCACCAAAGTCACCGGGAAACCCATTGAAAAACCCGCTGGAA CACCGACACGCCCGGTCGCTTATGATAAGGAAAAACAAGAGCAGGAAGCG GAGAAAGAGTACGAAGAGTTCAAGCACCAAGCCAACGACAAACCCGACCA ACATTTGAAAGTTGAACATTTGAAGGAGAAAGATAAAATGGACCAGCCCG TGGAACAGGACGCGGATTCTCAAAGTGTGGATATCTTGGGTAAAGATAAG CAGAAAAATGAAGAACGAAAAGGGCAGGAGAAAAAGAAGGAAGATCAGGT TTTTGAAGAGGAAGGAAAAACGCAGGACTCTTTGATGGCAAAACTACAGG ACGATGAGAAGGAGGATAAAAAGATTGAAAGGAAAGAACATTCGAAGGag gaagaaaatatttcttcaaaGGAAGATTGCAAATCATCATCAAGTGAAAA AGTTATGGGTGGTGGTTGCGGCGAGCTCATGATCACTTCCGATGAAGACC TTCTCAAACCTAAAAACGAAAAGGATAAAGCAAAAATTATCAAACAAATT GCCATCTTACAGAAAGCGCTGACTTCATATTACAAGAACACGAAATCGCC TTCTTCACCGACACCAGTAGTGCTGGTGCATGAAATTAACTTAGTAaaca atgaaaacaaagaaagtgaaaaagaaacGAAACAATTGAATAAACAAATT AATGATCTACAAACTATGTTGaaagaacaaaaacaaagcGAATGTCAACC CATCATGACTAAAGTCAAAGGGAAATTAATCCTTGACAAAAACTGCGACG ACAAAAAGAAACGCTCTCACGTTTCgaacaaaaaatggaaaaaatcacGT ATTACTAAACTAAGGAAACAATTGGGTAACATTAAATAAGGaggcttttt ttcattttcgcttttgtaaatttgtatatATTCTTAGATCTTAGATTACC GATTATTTTTGGAAACAATTTGATGTCGGTCAAAATACCAATCCTCAAAA TGTTTCTTACTACTTTCATAAATAGCCCTCTTCTACGtagcctgaaaaaa aaatttataaatgaaaaatctctataaaaatataaaaatttaaaacaatg aggACTAGGAAAAAAGCTTGGTATGAGAAGCAACTCGagttgaaaatgaa agtcaCTCTTGGGAGTGTCAAAAGGAGGGAGCAACCTTAAAGAGTTATAT TGTAACTATAAGGTTGTAAGGTTGTCTAAGATCTATGACTTGGCATTTGG TAATTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000569XLOC_000569Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000945-exon-sc0000007-1491911889:37747..37983TCONS_00000945-exon-sc0000007-1491911889:37747..37983Clytia hemisphaericaexon
TCONS_00000945-exon-sc0000007-1510915933:37747..37983TCONS_00000945-exon-sc0000007-1510915933:37747..37983Clytia hemisphaericaexon
TCONS_00000945-exon-sc0000007-1575043694:37747..37983TCONS_00000945-exon-sc0000007-1575043694:37747..37983Clytia hemisphaericaexon
TCONS_00000945-exon-sc0000007-1491911889:38252..38407TCONS_00000945-exon-sc0000007-1491911889:38252..38407Clytia hemisphaericaexon
TCONS_00000945-exon-sc0000007-1510915933:38252..38407TCONS_00000945-exon-sc0000007-1510915933:38252..38407Clytia hemisphaericaexon
TCONS_00000945-exon-sc0000007-1575043694:38252..38407TCONS_00000945-exon-sc0000007-1575043694:38252..38407Clytia hemisphaericaexon
TCONS_00000945-exon-sc0000007-1491911889:38550..39023TCONS_00000945-exon-sc0000007-1491911889:38550..39023Clytia hemisphaericaexon
TCONS_00000945-exon-sc0000007-1510915933:38550..39023TCONS_00000945-exon-sc0000007-1510915933:38550..39023Clytia hemisphaericaexon
TCONS_00000945-exon-sc0000007-1575043694:38550..39023TCONS_00000945-exon-sc0000007-1575043694:38550..39023Clytia hemisphaericaexon
TCONS_00000945-exon-sc0000007-1491911889:39177..41856TCONS_00000945-exon-sc0000007-1491911889:39177..41856Clytia hemisphaericaexon
TCONS_00000945-exon-sc0000007-1510915933:39177..41856TCONS_00000945-exon-sc0000007-1510915933:39177..41856Clytia hemisphaericaexon
TCONS_00000945-exon-sc0000007-1575043694:39177..41856TCONS_00000945-exon-sc0000007-1575043694:39177..41856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:37747..41856 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0.0100789 0 0 0.0484949 0.0615672 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.0147336 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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