Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000945 ID=TCONS_00000945|Name=TCONS_00000945|organism=Clytia hemisphaerica|type=transcript|length=3547bp
CGGGCTTCTCCATACAAAATGATTGTGAGATGTTTGTAAGCCACCCTAAT
GAATTGGGCGGTGGGCATGAATCAGTGTTCGTCGATAAGAATGGGCAGAT
GGAGGAAGCCAAAACACACATACAAGGACTAGCGAAAGACAGCGTCGAAC
ATCATCACAATGGTCCGGTTGACGgaccaccaatcaaatttcggacggac
gaacacgatttgcattctcttctTGGAGACGATGAAGTAGCGCCGTTCCA
CCCTCCCCACCATCATTCGTAcgacgaagaagaagaaggaggaATCACAC
GAGGTGACGAGGCTTTCGTGAAAACCATCCAAGAATTGCAAGATTCTGGT
TTGAAATTGCATTCTATTCATGAAGATGAAGTCACACACGATGAGCGAGG
ATTTCAACCACACCACGAAGAACGAACGTACCATCACGAAGATACCCCTG
CTGGTTACCACAATGTTTATGAATATCACCATGGTGATTTACATGAAGAT
GAGGGCCACCATGGTGGAGGACATCATCAAGGTCATCATGGAGGGCATGG
TCACGAAGAGGGGCATCACCATGAAGGTCACCACGACGAAGGGCACCACG
AAGAAGAGCATCATGGCGGACACGGTCACGAAGAACATGGAGAGCACCAT
GAGGAGGAGCACCACGAACACGGCCATGAGGAAGAGGGACACCATGGGGA
GCATCATGCAGCACCTCAAGATGTGGAGGAGGGTAGTGGAGATGTGACGG
AGGaccaaaagaagaagaagaagaagttaAAACATTATGGTTCTTATGCG
AGCAATGGAGAATCGAAGAAAGTGGAATTCAGTGAAGAAGAGAAAAACCC
TTATCATAATAAACAAGCTGAATCAGATGAAAAGACAAAAACGAAAGAGG
AGGAGGGAGAAGAAGCGAAAggagaaaaagtcaaagaagAGAAGGGGAAA
GCAGATAATTATGTATTCCTTCTTGGAAAATCAAACAAGAAACTGGATGA
AGGGAACCTACCAAACGTTTTCAAAGAGCTGGTGCATGATGCGAAAGCAT
TGACAGAAAAACTGAAGGAAAAGAAAGGGAGCAAAGAagaaacagaagaa
aaagaCACCAAATCGAAAAACCTCTCCAAGTTTGGTGAACTAAAGGATGA
CACCAAGGAAAGCCATGAAGAAAAAAGTGCAGAACAGCAAAATAACAGCA
AAAATCTTTCCCATTTCGGTCAGCTCAATCAAAATGATAAAGAGGGTACC
AAGATGCAATCACCTCATTCACAAACACAAGATGATTCTACAGAGCAAAC
AAAATCCAGTAATAAAAGTGATGAAAAAGAGCAAGAAAACCCCAAAGAAA
ACGAAAAGCTCAAATCTAAGCCAGTTGAGCAATCAAGAATAATCAACATG
CTGAAGAAATATATACAGCAGTCAAAAGCTAAGACAAAAGAGGCGAGTAA
GAAAGAAGGCAAGTTGACAATCGATTATACGTATCGAGACAAACAACCTC
AGATCAATGACTATGATTTGGGTGATCTAGGGGATACCAAGAAAAATCAA
AGTTCGTTTACCAAAGACAAGGACGTGGAGCGAGTAGCGCAACGAATCAT
CAATAAATTCACCACCAAATCAGGTGACCTTGATCTACCGAATGATGTTG
TGGTAGAGAAAGGTGATGAGAGCATCCTGAACAATCACGTCATGAATAAA
CCTACAAGTGCTCACAAGAAACAAGAAACTTGTTGTGGAACACACGCAGC
TACTATGCATCACACTGCTCCACAAGCACAGGAAATCCTTGTAGAGATGC
CTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCGCCCCCT
CCTCCTCCATCATGTCCAGCACCCTGTCATGCACCTGAAACACAACCCGC
ACCTGATCAACCCATCGAAGATCTTCCAAGCGTTGATGAGGAGCAAGAGA
AACTTCGAAAGTTATTGgagagaaaacaaaaattggATCAACTACAATCA
GAATATGAGCATGAATTGGACATCTTCAAGAGTGAACTGAACAAAGAAAA
GACTACCAAGTCACCACGCAAAGGAAAAACAACTTCCTCATCCTCGTCAA
AAGAAACTCCAGCACAAAAGGATGAAGAGAACCCTGACGatttgattttt
ccaaaagaaatgaaTGGGTGTGGTCAAGCACAATCTGTTGACAAGATGAA
GCAATGTTTGAAAGCAAATACTGAAGACGGGGAGGAAAAACCAGCACCTT
CCTTATCCAAGTCATCGGAGAAAGAATCCAAACCAACAGAATCCGTCACC
AAAGTCACCGGGAAACCCATTGAAAAACCCGCTGGAACACCGACACGCCC
GGTCGCTTATGATAAGGAAAAACAAGAGCAGGAAGCGGAGAAAGAGTACG
AAGAGTTCAAGCACCAAGCCAACGACAAACCCGACCAACATTTGAAAGTT
GAACATTTGAAGGAGAAAGATAAAATGGACCAGCCCGTGGAACAGGACGC
GGATTCTCAAAGTGTGGATATCTTGGGTAAAGATAAGCAGAAAAATGAAG
AACGAAAAGGGCAGGAGAAAAAGAAGGAAGATCAGGTTTTTGAAGAGGAA
GGAAAAACGCAGGACTCTTTGATGGCAAAACTACAGGACGATGAGAAGGA
GGATAAAAAGATTGAAAGGAAAGAACATTCGAAGGaggaagaaaatattt
cttcaaaGGAAGATTGCAAATCATCATCAAGTGAAAAAGTTATGGGTGGT
GGTTGCGGCGAGCTCATGATCACTTCCGATGAAGACCTTCTCAAACCTAA
AAACGAAAAGGATAAAGCAAAAATTATCAAACAAATTGCCATCTTACAGA
AAGCGCTGACTTCATATTACAAGAACACGAAATCGCCTTCTTCACCGACA
CCAGTAGTGCTGGTGCATGAAATTAACTTAGTAaacaatgaaaacaaaga
aagtgaaaaagaaacGAAACAATTGAATAAACAAATTAATGATCTACAAA
CTATGTTGaaagaacaaaaacaaagcGAATGTCAACCCATCATGACTAAA
GTCAAAGGGAAATTAATCCTTGACAAAAACTGCGACGACAAAAAGAAACG
CTCTCACGTTTCgaacaaaaaatggaaaaaatcacGTATTACTAAACTAA
GGAAACAATTGGGTAACATTAAATAAGGaggctttttttcattttcgctt
ttgtaaatttgtatatATTCTTAGATCTTAGATTACCGATTATTTTTGGA
AACAATTTGATGTCGGTCAAAATACCAATCCTCAAAATGTTTCTTACTAC
TTTCATAAATAGCCCTCTTCTACGtagcctgaaaaaaaaatttataaatg
aaaaatctctataaaaatataaaaatttaaaacaatgaggACTAGGAAAA
AAGCTTGGTATGAGAAGCAACTCGagttgaaaatgaaagtcaCTCTTGGG
AGTGTCAAAAGGAGGGAGCAACCTTAAAGAGTTATATTGTAACTATAAGG
TTGTAAGGTTGTCTAAGATCTATGACTTGGCATTTGGTAATTGCTAG Run BLAST on NCBI transcript from alignment at sc0000007:37747..41856+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000945 ID=TCONS_00000945|Name=TCONS_00000945|organism=Clytia hemisphaerica|type=transcript|length=4110bp|location=Sequence derived from alignment at sc0000007:37747..41856+ (Clytia hemisphaerica)
CGGGCTTCTCCATACAAAATGATTGTGAGATGTTTGTAAGCCACCCTAAT
GAATTGGGCGGTGGGCATGAATCAGTGTTCGTCGATAAGAATGGGCAGAT
GGAGGAAGCCAAAACACACATACAAGGACTAGCGAAAGACAGCGTCGAAC
ATCATCACAATGGTCCGGTTGACGgaccaccaatcaaatttcggacggac
gaacacgatttgcattctcttctTGGAGACGATGAAGGTTAGTGagattt
ttctttcttcaacTGGTTGTATATTTGAAATGAGCATTCAGAATGATAAT
CAAAAATTCGCGACAGCAANGCTGGTTGTATATTTGAAATGAGTATCAGA
ATGATAATCAAAAATTCGCGACAGCAATGTCTCCAAAGCGCAAAACATTT
CATTTCCGACGAGAAGAATTTACAAGAAAACCTGAAGAATTGAAGGAACA
CGGCATCACATCTTTTGCTTGCGAGCAAtcttatatttttgttttgttcc
ttCAGTAGCGCCGTTCCACCCTCCCCACCATCATTCGTAcgacgaagaag
aagaaggaggaATCACACGAGGTGACGAGGCTTTCGTGAAAACCATCCAA
GAATTGCAAGATTCTGGTTTGAAATTGCATTCTATTCATGAAGATGAAGT
CACACACGATGGTAAGGACGACTTTTATTTGCCATTATAACATTTAAAAA
GTAAACCACTCTCGTGAAATAATCAAAATCtcaatcagtattgaagatCA
ATCAAGTTTGCCCGTCGTTTTACCTTCTCTCTCTCTATTCTCTTTTTACG
TAGAGCGAGGATTTCAACCACACCACGAAGAACGAACGTACCATCACGAA
GATACCCCTGCTGGTTACCACAATGTTTATGAATATCACCATGGTGATTT
ACATGAAGATGAGGGCCACCATGGTGGAGGACATCATCAAGGTCATCATG
GAGGGCATGGTCACGAAGAGGGGCATCACCATGAAGGTCACCACGACGAA
GGGCACCACGAAGAAGAGCATCATGGCGGACACGGTCACGAAGAACATGG
AGAGCACCATGAGGAGGAGCACCACGAACACGGCCATGAGGAAGAGGGAC
ACCATGGGGAGCATCATGCAGCACCTCAAGATGTGGAGGAGGGTAGTGGA
GATGTGACGGAGGaccaaaagaagaagaagaagaagttaAAACATTATGG
TTCTTATGCGAGCAATGGAGAATCGAAGAAAGTGGAATTCAGTGAAGAAG
AGAAAAACCCTTATCATAATAAACAAGGTATGAATGTGATGTACTTCTAG
TGTTTTTAGATGGGGGTCAACTGTATCTTATTCGCTCATtaacaaattga
ttttttgagtttttttgtcaGTAAATGGAAgagagagactttgaaaattg
ACCGGCACATTTAATCTCATTTCTTAGAAGCTGAATCAGATGAAAAGACA
AAAACGAAAGAGGAGGAGGGAGAAGAAGCGAAAggagaaaaagtcaaaga
agAGAAGGGGAAAGCAGATAATTATGTATTCCTTCTTGGAAAATCAAACA
AGAAACTGGATGAAGGGAACCTACCAAACGTTTTCAAAGAGCTGGTGCAT
GATGCGAAAGCATTGACAGAAAAACTGAAGGAAAAGAAAGGGAGCAAAGA
agaaacagaagaaaaagaCACCAAATCGAAAAACCTCTCCAAGTTTGGTG
AACTAAAGGATGACACCAAGGAAAGCCATGAAGAAAAAAGTGCAGAACAG
CAAAATAACAGCAAAAATCTTTCCCATTTCGGTCAGCTCAATCAAAATGA
TAAAGAGGGTACCAAGATGCAATCACCTCATTCACAAACACAAGATGATT
CTACAGAGCAAACAAAATCCAGTAATAAAAGTGATGAAAAAGAGCAAGAA
AACCCCAAAGAAAACGAAAAGCTCAAATCTAAGCCAGTTGAGCAATCAAG
AATAATCAACATGCTGAAGAAATATATACAGCAGTCAAAAGCTAAGACAA
AAGAGGCGAGTAAGAAAGAAGGCAAGTTGACAATCGATTATACGTATCGA
GACAAACAACCTCAGATCAATGACTATGATTTGGGTGATCTAGGGGATAC
CAAGAAAAATCAAAGTTCGTTTACCAAAGACAAGGACGTGGAGCGAGTAG
CGCAACGAATCATCAATAAATTCACCACCAAATCAGGTGACCTTGATCTA
CCGAATGATGTTGTGGTAGAGAAAGGTGATGAGAGCATCCTGAACAATCA
CGTCATGAATAAACCTACAAGTGCTCACAAGAAACAAGAAACTTGTTGTG
GAACACACGCAGCTACTATGCATCACACTGCTCCACAAGCACAGGAAATC
CTTGTAGAGATGCCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACC
TCCACCGCCCCCTCCTCCTCCATCATGTCCAGCACCCTGTCATGCACCTG
AAACACAACCCGCACCTGATCAACCCATCGAAGATCTTCCAAGCGTTGAT
GAGGAGCAAGAGAAACTTCGAAAGTTATTGgagagaaaacaaaaattggA
TCAACTACAATCAGAATATGAGCATGAATTGGACATCTTCAAGAGTGAAC
TGAACAAAGAAAAGACTACCAAGTCACCACGCAAAGGAAAAACAACTTCC
TCATCCTCGTCAAAAGAAACTCCAGCACAAAAGGATGAAGAGAACCCTGA
CGatttgatttttccaaaagaaatgaaTGGGTGTGGTCAAGCACAATCTG
TTGACAAGATGAAGCAATGTTTGAAAGCAAATACTGAAGACGGGGAGGAA
AAACCAGCACCTTCCTTATCCAAGTCATCGGAGAAAGAATCCAAACCAAC
AGAATCCGTCACCAAAGTCACCGGGAAACCCATTGAAAAACCCGCTGGAA
CACCGACACGCCCGGTCGCTTATGATAAGGAAAAACAAGAGCAGGAAGCG
GAGAAAGAGTACGAAGAGTTCAAGCACCAAGCCAACGACAAACCCGACCA
ACATTTGAAAGTTGAACATTTGAAGGAGAAAGATAAAATGGACCAGCCCG
TGGAACAGGACGCGGATTCTCAAAGTGTGGATATCTTGGGTAAAGATAAG
CAGAAAAATGAAGAACGAAAAGGGCAGGAGAAAAAGAAGGAAGATCAGGT
TTTTGAAGAGGAAGGAAAAACGCAGGACTCTTTGATGGCAAAACTACAGG
ACGATGAGAAGGAGGATAAAAAGATTGAAAGGAAAGAACATTCGAAGGag
gaagaaaatatttcttcaaaGGAAGATTGCAAATCATCATCAAGTGAAAA
AGTTATGGGTGGTGGTTGCGGCGAGCTCATGATCACTTCCGATGAAGACC
TTCTCAAACCTAAAAACGAAAAGGATAAAGCAAAAATTATCAAACAAATT
GCCATCTTACAGAAAGCGCTGACTTCATATTACAAGAACACGAAATCGCC
TTCTTCACCGACACCAGTAGTGCTGGTGCATGAAATTAACTTAGTAaaca
atgaaaacaaagaaagtgaaaaagaaacGAAACAATTGAATAAACAAATT
AATGATCTACAAACTATGTTGaaagaacaaaaacaaagcGAATGTCAACC
CATCATGACTAAAGTCAAAGGGAAATTAATCCTTGACAAAAACTGCGACG
ACAAAAAGAAACGCTCTCACGTTTCgaacaaaaaatggaaaaaatcacGT
ATTACTAAACTAAGGAAACAATTGGGTAACATTAAATAAGGaggcttttt
ttcattttcgcttttgtaaatttgtatatATTCTTAGATCTTAGATTACC
GATTATTTTTGGAAACAATTTGATGTCGGTCAAAATACCAATCCTCAAAA
TGTTTCTTACTACTTTCATAAATAGCCCTCTTCTACGtagcctgaaaaaa
aaatttataaatgaaaaatctctataaaaatataaaaatttaaaacaatg
aggACTAGGAAAAAAGCTTGGTATGAGAAGCAACTCGagttgaaaatgaa
agtcaCTCTTGGGAGTGTCAAAAGGAGGGAGCAACCTTAAAGAGTTATAT
TGTAACTATAAGGTTGTAAGGTTGTCTAAGATCTATGACTTGGCATTTGG
TAATTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000945-exon-sc0000007-1491911889:37747..37983 | TCONS_00000945-exon-sc0000007-1491911889:37747..37983 | Clytia hemisphaerica | exon |
| TCONS_00000945-exon-sc0000007-1510915933:37747..37983 | TCONS_00000945-exon-sc0000007-1510915933:37747..37983 | Clytia hemisphaerica | exon |
| TCONS_00000945-exon-sc0000007-1575043694:37747..37983 | TCONS_00000945-exon-sc0000007-1575043694:37747..37983 | Clytia hemisphaerica | exon |
| TCONS_00000945-exon-sc0000007-1491911889:38252..38407 | TCONS_00000945-exon-sc0000007-1491911889:38252..38407 | Clytia hemisphaerica | exon |
| TCONS_00000945-exon-sc0000007-1510915933:38252..38407 | TCONS_00000945-exon-sc0000007-1510915933:38252..38407 | Clytia hemisphaerica | exon |
| TCONS_00000945-exon-sc0000007-1575043694:38252..38407 | TCONS_00000945-exon-sc0000007-1575043694:38252..38407 | Clytia hemisphaerica | exon |
| TCONS_00000945-exon-sc0000007-1491911889:38550..39023 | TCONS_00000945-exon-sc0000007-1491911889:38550..39023 | Clytia hemisphaerica | exon |
| TCONS_00000945-exon-sc0000007-1510915933:38550..39023 | TCONS_00000945-exon-sc0000007-1510915933:38550..39023 | Clytia hemisphaerica | exon |
| TCONS_00000945-exon-sc0000007-1575043694:38550..39023 | TCONS_00000945-exon-sc0000007-1575043694:38550..39023 | Clytia hemisphaerica | exon |
| TCONS_00000945-exon-sc0000007-1491911889:39177..41856 | TCONS_00000945-exon-sc0000007-1491911889:39177..41856 | Clytia hemisphaerica | exon |
| TCONS_00000945-exon-sc0000007-1510915933:39177..41856 | TCONS_00000945-exon-sc0000007-1510915933:39177..41856 | Clytia hemisphaerica | exon |
| TCONS_00000945-exon-sc0000007-1575043694:39177..41856 | TCONS_00000945-exon-sc0000007-1575043694:39177..41856 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:37747..41856 + |
Blast
The following BLAST results are available for this feature:
|
