TCONS_00000905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000905
Unique NameTCONS_00000905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2217

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000905 ID=TCONS_00000905|Name=TCONS_00000905|organism=Clytia hemisphaerica|type=transcript|length=2217bp
ATTTACTTAGTTTAAACCACTTTAAGTTTCGTCACAACCCTGTCTGGATA
ATTGGCTGAAAATCTTCTTAATTTCAGTTTGGGAAAATTTTCTCAGGAAA
GGGGATTGTTCCTTGTAGTTTTCCAAGGGGAATggaatttcaaccttttt
tccAGTTGATAGGGGATTCTACCGCTTCTGTGACACAGGGGCTAAATCAA
TTCTCGTCTGAAAATCAAGTAATATTCACAGGAAAAATGAATAGACCACC
TGGGAGGGAGAAAAGTACATTTCACACCTTGGAACGTGAATGATTTACCC
ATCCGAGTGAATTTTTTGCACTTTCCAAGCTGTGAAATTTACTTTTTACA
TCCAATTGATCTGCTCGTTTTTTTCCTGGGATCTATAACTAAATAATCAT
ATACCTGAATTTAAAAGCTATATACAATCAGTGTCCGTCCATTTAGTTCA
CTGTAGTTCAATGTCGTTTATTTCTTGCGCATGCGCTTCTGTTTCTTCTA
TACTTTCTTTCATTTCAACTCCTTTTGTTTCTGGTAAGAAATGGTTAACA
AAACCTGCAACTATTCCCAGCACTCCCATAACAATAAAAGGTAGTCCTGG
CAACACTTTCAAAAAACCTTTAGCTACCCAAGGAGCGCTGGCTCCTCCAA
TATAAACGGCTATATTGATGATACCAAATGCTTCAGATCTTATATTAGTT
GGGTACACTTCCACGAGGAGGGTTGCAATAGCGTCAAAGCTTAATGTGAC
GAAGAGCTTTCCTAACATTCCCAAACAGATACGAATGACTTTGGTCGATG
TAAAGGAGATAGATAATGTCAGCAATCCTGCTATCACAAGAGGTATTGAA
GATGAGTTCCTTCGACCAAATCGATTACAACAATAAGTTGCCAAGAAGTT
AGCCGGGAATTCTACCAGACTCACCAAGAAGAAACTTAAATAAATTGAAT
CAACTCCAATATCATCTGCAGCTAGCGAGATTCCATAATACACCAACGCA
TTTGTGTAACAgccgaagatgaaaatgaaggtGTTTATGGCAACTTTTTT
CGGACGAAATAAATCCAGTGGACTTGACATTTCTTTTGATGCATTTCCTT
TGGATAACTGGAGAGCTGGATCGAGTTCTTTCCCATTCCATTTTGCCATG
CgtttaaaaatattgacagcTTCCTCAGACTTTCCCTTTAATCTCAGCCA
ACGGACAGACTCTGGCACCAAACGATATGTTAGTAGCAATATAAGGTATG
GTGCAGAACACACTACAACAAGAACTTTCCATGAGTCTATGAAGTAAGCT
TTTAAGGGTAAAATACAAAGTGCAATGGCGTAGAAAATCCAAAGTAGATT
ACCAGCAAACGGCCTCCATTTCTCACCAGTGACTTCAGTTATCATTACAA
AGCTTCCAATGCCTCCTACGAAAAAGCCAGTTAAGAATCGAAGTGTGATG
AAGAGTGAAATATCCGGCATGTATGCTGACAACAGCTTTGTGAACAGGAt
cataaaaaaactaataaaagtTACTTTCTTGCGTCCAAAGTTATCAGATA
GCCAGTTCAAAATAATAGAACCGAAAAGCCCACCAATAAAAATCATAGAT
GTTGATAAATTGATAAGCCAGCTACGATCACAATCTAAATTGTATTGGAC
AATCATTGAGGAATCCGCTGATTGGGCATATTCCCATTCAGATCTTGAAA
TGCTGCAACGGAAATTGTTCTCCCCTGCTTGTGTGGTGTTCAAATTACAC
ACCGTACTATTCTTCACGCATTGCCAGTCAGGTGGAAGAGCTGTGAAGTA
CATTAGATACAAACTGTTAGCCAACGGGAATTCCATAAACGCGAAAATAA
TGTTAAGGAAAATTTGAAGTTTTCCATATTCACCGACTACTTTTAAAAAC
TGGTCAACGTTTAGCTCTTTTCTCGGCTTTGCTTGAAAAGCGGCTTTAGT
ATCTTCGATTTTTCCATGGTTTGTTTTAATCTCAGAAGCCATTCTGTCTT
TCTGTGCACTGCAATCCTTTAATATGTTTTTAGCAGTCAATAGCACTCTT
TACATCACAATGTCTGGCCTGATATCTTATTACATGTTTAGTTTAGATGT
AAAGTACTTTAGATCCTTTTGAGTATGACGGTATTTATTTTAGAGGCCTT
CATGCAATGTTTTCGGTATACAAATAACCTTATTTAGCTTTTCCACCCGT
ATTACATAATGTTACTG
Run BLAST on NCBI

protein sequence of TCONS_00000905-protein

>TCONS_00000905-protein ID=TCONS_00000905-protein|Name=TCONS_00000905-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
MASEIKTNHGKIEDTKAAFQAKPRKELNVDQFLKVVGEYGKLQIFLNIIF
AFMEFPLANSLYLMYFTALPPDWQCVKNSTVCNLNTTQAGENNFRCSISR
SEWEYAQSADSSMIVQYNLDCDRSWLINLSTSMIFIGGLFGSIILNWLSD
NFGRKKVTFISFFMILFTKLLSAYMPDISLFITLRFLTGFFVGGIGSFVM
ITEVTGEKWRPFAGNLLWIFYAIALCILPLKAYFIDSWKVLVVVCSAPYL
ILLLTYRLVPESVRWLRLKGKSEEAVNIFKRMAKWNGKELDPALQLSKGN
ASKEMSSPLDLFRPKKVAINTFIFIFGCYTNALVYYGISLAADDIGVDSI
YLSFFLVSLVEFPANFLATYCCNRFGRRNSSSIPLVIAGLLTLSISFTST
KVIRICLGMLGKLFVTLSFDAIATLLVEVYPTNIRSEAFGIINIAVYIGG
ASAPWVAKGFLKVLPGLPFIVMGVLGIVAGFVNHFLPETKGVEMKESIEE
TEAHAQEINDIELQ
Run BLAST on NCBI

transcript from alignment at sc0000005:230815..233031

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000905 ID=TCONS_00000905|Name=TCONS_00000905|organism=Clytia hemisphaerica|type=transcript|length=2217bp|location=Sequence derived from alignment at sc0000005:230815..233031 (Clytia hemisphaerica)
CAGTAACATTATGTAATACGGGTGGAAAAGCTAAATAAGGTTATTTGTAT
ACCGAAAACATTGCATGAAGGCCTCTAAAATAAATACCGTCATACTCAAA
AGGATCTAAAGTACTTTACATCTAAACTAAACATGTAATAAGATATCAGG
CCAGACATTGTGATGTAAAGAGTGCTATTGACTGCTAAAAACATATTAAA
GGATTGCAGTGCACAGAAAGACAGAATGGCTTCTGAGATTAAAACAAACC
ATGGAAAAATCGAAGATACTAAAGCCGCTTTTCAAGCAAAGCCGAGAAAA
GAGCTAAACGTTGACCAGTTTTTAAAAGTAGTCGGTGAATATGGAAAACT
TCAAATTTTCCTTAACATTATTTTCGCGTTTATGGAATTCCCGTTGGCTA
ACAGTTTGTATCTAATGTACTTCACAGCTCTTCCACCTGACTGGCAATGC
GTGAAGAATAGTACGGTGTGTAATTTGAACACCACACAAGCAGGGGAGAA
CAATTTCCGTTGCAGCATTTCAAGATCTGAATGGGAATATGCCCAATCAG
CGGATTCCTCAATGATTGTCCAATACAATTTAGATTGTGATCGTAGCTGG
CTTATCAATTTATCAACATCTATGATTTTTATTGGTGGGCTTTTCGGTTC
TATTATTTTGAACTGGCTATCTGATAACTTTGGACGCAAGAAAGTAactt
ttattagtttttttatgaTCCTGTTCACAAAGCTGTTGTCAGCATACATG
CCGGATATTTCACTCTTCATCACACTTCGATTCTTAACTGGCTTTTTCGT
AGGAGGCATTGGAAGCTTTGTAATGATAACTGAAGTCACTGGTGAGAAAT
GGAGGCCGTTTGCTGGTAATCTACTTTGGATTTTCTACGCCATTGCACTT
TGTATTTTACCCTTAAAAGCTTACTTCATAGACTCATGGAAAGTTCTTGT
TGTAGTGTGTTCTGCACCATACCTTATATTGCTACTAACATATCGTTTGG
TGCCAGAGTCTGTCCGTTGGCTGAGATTAAAGGGAAAGTCTGAGGAAgct
gtcaatatttttaaacGCATGGCAAAATGGAATGGGAAAGAACTCGATCC
AGCTCTCCAGTTATCCAAAGGAAATGCATCAAAAGAAATGTCAAGTCCAC
TGGATTTATTTCGTCCGAAAAAAGTTGCCATAAACaccttcattttcatc
ttcggcTGTTACACAAATGCGTTGGTGTATTATGGAATCTCGCTAGCTGC
AGATGATATTGGAGTTGATTCAATTTATTTAAGTTTCTTCTTGGTGAGTC
TGGTAGAATTCCCGGCTAACTTCTTGGCAACTTATTGTTGTAATCGATTT
GGTCGAAGGAACTCATCTTCAATACCTCTTGTGATAGCAGGATTGCTGAC
ATTATCTATCTCCTTTACATCGACCAAAGTCATTCGTATCTGTTTGGGAA
TGTTAGGAAAGCTCTTCGTCACATTAAGCTTTGACGCTATTGCAACCCTC
CTCGTGGAAGTGTACCCAACTAATATAAGATCTGAAGCATTTGGTATCAT
CAATATAGCCGTTTATATTGGAGGAGCCAGCGCTCCTTGGGTAGCTAAAG
GTTTTTTGAAAGTGTTGCCAGGACTACCTTTTATTGTTATGGGAGTGCTG
GGAATAGTTGCAGGTTTTGTTAACCATTTCTTACCAGAAACAAAAGGAGT
TGAAATGAAAGAAAGTATAGAAGAAACAGAAGCGCATGCGCAAGAAATAA
ACGACATTGAACTACAGTGAACTAAATGGACGGACACTGATTGTATATAG
CTTTTAAATTCAGGTATATGATTATTTAGTTATAGATCCCAGGAAAAAAA
CGAGCAGATCAATTGGATGTAAAAAGTAAATTTCACAGCTTGGAAAGTGC
AAAAAATTCACTCGGATGGGTAAATCATTCACGTTCCAAGGTGTGAAATG
TACTTTTCTCCCTCCCAGGTGGTCTATTCATTTTTCCTGTGAATATTACT
TGATTTTCAGACGAGAATTGATTTAGCCCCTGTGTCACAGAAGCGGTAGA
ATCCCCTATCAACTggaaaaaaggttgaaattccATTCCCCTTGGAAAAC
TACAAGGAACAATCCCCTTTCCTGAGAAAATTTTCCCAAACTGAAATTAA
GAAGATTTTCAGCCAATTATCCAGACAGGGTTGTGACGAAACTTAAAGTG
GTTTAAACTAAGTAAAT

Coding sequence (CDS) from alignment at sc0000005:230815..233031

>TCONS_00000905 ID=TCONS_00000905|Name=TCONS_00000905|organism=Clytia hemisphaerica|type=CDS|length=1545bp|location=Sequence derived from alignment at sc0000005:230815..233031 (Clytia hemisphaerica)
ATGGCTTCTGAGATTAAAACAAACCATGGAAAAATCGAAGATACTAAAGC
CGCTTTTCAAGCAAAGCCGAGAAAAGAGCTAAACGTTGACCAGTTTTTAA
AAGTAGTCGGTGAATATGGAAAACTTCAAATTTTCCTTAACATTATTTTC
GCGTTTATGGAATTCCCGTTGGCTAACAGTTTGTATCTAATGTACTTCAC
AGCTCTTCCACCTGACTGGCAATGCGTGAAGAATAGTACGGTGTGTAATT
TGAACACCACACAAGCAGGGGAGAACAATTTCCGTTGCAGCATTTCAAGA
TCTGAATGGGAATATGCCCAATCAGCGGATTCCTCAATGATTGTCCAATA
CAATTTAGATTGTGATCGTAGCTGGCTTATCAATTTATCAACATCTATGA
TTTTTATTGGTGGGCTTTTCGGTTCTATTATTTTGAACTGGCTATCTGAT
AACTTTGGACGCAAGAAAGTAacttttattagtttttttatgaTCCTGTT
CACAAAGCTGTTGTCAGCATACATGCCGGATATTTCACTCTTCATCACAC
TTCGATTCTTAACTGGCTTTTTCGTAGGAGGCATTGGAAGCTTTGTAATG
ATAACTGAAGTCACTGGTGAGAAATGGAGGCCGTTTGCTGGTAATCTACT
TTGGATTTTCTACGCCATTGCACTTTGTATTTTACCCTTAAAAGCTTACT
TCATAGACTCATGGAAAGTTCTTGTTGTAGTGTGTTCTGCACCATACCTT
ATATTGCTACTAACATATCGTTTGGTGCCAGAGTCTGTCCGTTGGCTGAG
ATTAAAGGGAAAGTCTGAGGAAgctgtcaatatttttaaacGCATGGCAA
AATGGAATGGGAAAGAACTCGATCCAGCTCTCCAGTTATCCAAAGGAAAT
GCATCAAAAGAAATGTCAAGTCCACTGGATTTATTTCGTCCGAAAAAAGT
TGCCATAAACaccttcattttcatcttcggcTGTTACACAAATGCGTTGG
TGTATTATGGAATCTCGCTAGCTGCAGATGATATTGGAGTTGATTCAATT
TATTTAAGTTTCTTCTTGGTGAGTCTGGTAGAATTCCCGGCTAACTTCTT
GGCAACTTATTGTTGTAATCGATTTGGTCGAAGGAACTCATCTTCAATAC
CTCTTGTGATAGCAGGATTGCTGACATTATCTATCTCCTTTACATCGACC
AAAGTCATTCGTATCTGTTTGGGAATGTTAGGAAAGCTCTTCGTCACATT
AAGCTTTGACGCTATTGCAACCCTCCTCGTGGAAGTGTACCCAACTAATA
TAAGATCTGAAGCATTTGGTATCATCAATATAGCCGTTTATATTGGAGGA
GCCAGCGCTCCTTGGGTAGCTAAAGGTTTTTTGAAAGTGTTGCCAGGACT
ACCTTTTATTGTTATGGGAGTGCTGGGAATAGTTGCAGGTTTTGTTAACC
ATTTCTTACCAGAAACAAAAGGAGTTGAAATGAAAGAAAGTATAGAAGAA
ACAGAAGCGCATGCGCAAGAAATAAACGACATTGAACTACAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000530XLOC_000530Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000905-proteinTCONS_00000905-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000905-exon-sc0000005-1491911889:230815..233031TCONS_00000905-exon-sc0000005-1491911889:230815..233031Clytia hemisphaericaexon
TCONS_00000905-exon-sc0000005-1510915933:230815..233031TCONS_00000905-exon-sc0000005-1510915933:230815..233031Clytia hemisphaericaexon
TCONS_00000905-exon-sc0000005-1575043694:230815..233031TCONS_00000905-exon-sc0000005-1575043694:230815..233031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:230815..233031 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0530046	0.0172293	0	0.0391432	0.0238266	0.0753122	0	0	0	0.036884	0	0.0117669	2.23261	1.9647	1.54502	5.12486	0.278532	0.53019	1.97208	2.3781	0.0170826	0.0249969	0.060774	0	0.0569087	0.0169299	0.0242266	0	0.0980516	0.0399596
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
Blast
[Close]
BLAST of TCONS_00000905 vs. Swiss-Prot (Human)
Match: S22A3 (Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 4.027e-57
Identity = 128/409 (31.30%), Postives = 228/409 (55.75%), Query Frame = -1 
Query:  487 RSEWEYAQSADSSMIVQYNLDCDRSWLINLSTSMXXXXXXXXXXXLNWLSDNFGRKKVTFISFFMILFTKLLSAYMPDISLFITLRFLTGFFVGG--IGSFVMITEVTGEKWRPFAGNLLWIFYAIALCILPLKAYFIDSWKVLVVVCSAPYLILLLTYRLVPESVRWLRLKGKSEEAVNIFKRMAKWNGKELDPALQLSKGNASKEMSSP--LDLFRPKKVAINTFIFIFGCYTNALVYYGISLAADDIGVDSIYLSFFLVSLVEFPANFLATYCCNRFGRRNSSSIPLVIAGLLTLSISFTSTKV--IRICLGMLGKLFVTLSFDAIATLLVEVYPTNIRSEAFGIINIAVYIGGASAPWVAKGFLKVLPGLPFIVMGVLGIVAGFVNHFLPETKGVEMKESIEETE 1695
            R  W YAQ A S+++ +++L C  +W+++L+ +++ +G L G+  L + +D +GR  +  +S   +  T ++ A+ P+  +F+  RFL G F  G  +  +V++TE+ G K R   G ++ +F+ + + ILP  AYFI +W+ + +  + P  + LL Y +VPES RWL  + K ++A+ I +R+AK NGK L            +E+S+P  LDL R  ++   T I +F  +T+A+VY G+ +    IG  ++Y+ FF+  +VE P   L      R GRR   +   ++AG+  L  +F    +  +R  +  LG+L +T++F+ +  +  E+YPT +R+    + +     GG  AP++      V   LP I+ G+L  + G +   LPETKG+ + E++++ E
Sbjct:  128 RGGWRYAQ-AHSTIVSEFDLVCVNAWMLDLTQAILNLGFLTGAFTLGYAADRYGRIVIYLLSCLGVGVTGVVVAFAPNFPVFVIFRFLQGVFGKGTWMTCYVIVTEIVGSKQRRIVGIVIQMFFTLGIIILPGIAYFIPNWQGIQLAITLPSFLFLLYYWVVPESPRWLITRKKGDKALQILRRIAKCNGKYLSSNYS-EITVTDEEVSNPSFLDLVRTPQMRKCTLILMFAWFTSAVVYQGLVMRLGIIG-GNLYIDFFISGVVELPGALLILLTIERLGRRLPFAASNIVAGVACLVTAFLPEGIAWLRTTVATLGRLGITMAFEIVYLVNSELYPTTLRNFGVSLCSGLCDFGGIIAPFLLFRLAAVWLELPLIIFGILASICGGLVMLLPETKGIALPETVDDVE 533
The following BLAST results are available for this feature:
BLAST of TCONS_00000905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22A34.027e-5731.30Solute carrier family 22 member 3 OS=Homo sapiens ... [more]
back to top