TCONS_00000905-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000905-protein
Unique Name	TCONS_00000905-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	514

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000905-protein ID=TCONS_00000905-protein|Name=TCONS_00000905-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
MASEIKTNHGKIEDTKAAFQAKPRKELNVDQFLKVVGEYGKLQIFLNIIF
AFMEFPLANSLYLMYFTALPPDWQCVKNSTVCNLNTTQAGENNFRCSISR
SEWEYAQSADSSMIVQYNLDCDRSWLINLSTSMIFIGGLFGSIILNWLSD
NFGRKKVTFISFFMILFTKLLSAYMPDISLFITLRFLTGFFVGGIGSFVM
ITEVTGEKWRPFAGNLLWIFYAIALCILPLKAYFIDSWKVLVVVCSAPYL
ILLLTYRLVPESVRWLRLKGKSEEAVNIFKRMAKWNGKELDPALQLSKGN
ASKEMSSPLDLFRPKKVAINTFIFIFGCYTNALVYYGISLAADDIGVDSI
YLSFFLVSLVEFPANFLATYCCNRFGRRNSSSIPLVIAGLLTLSISFTST
KVIRICLGMLGKLFVTLSFDAIATLLVEVYPTNIRSEAFGIINIAVYIGG
ASAPWVAKGFLKVLPGLPFIVMGVLGIVAGFVNHFLPETKGVEMKESIEE
TEAHAQEINDIELQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000530	XLOC_000530	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000905	TCONS_00000905	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005828	MFS_sugar_transport-like
IPR020846	MFS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0022857	transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 514..514
None	No IPR available	GENE3D	1.20.1250.20		coord: 26..276 e-value: 9.0E-24 score: 83.4
None	No IPR available	GENE3D	1.20.1250.20		coord: 295..512 e-value: 1.4E-24 score: 86.0
IPR005828	Major facilitator, sugar transporter-like	PFAM	PF00083	Sugar_tr	coord: 94..496 e-value: 3.1E-35 score: 121.8
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 44..491 score: 15.142
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 124..487 e-value: 1.70808E-24 score: 102.392
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 125..496

Blast

[Close]

BLAST of TCONS_00000905-protein vs. Swiss-Prot (Human)
Match: S22A3 (Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 4.396e-63
Identity = 128/409 (31.30%), Postives = 228/409 (55.75%), Query Frame = 0

Query:  100 RSEWEYAQSADSSMIVQYNLDCDRSWLINLSTSMIFIGGLFGSIILNWLSDNFGRKKVTFISFFMILFTKLLSAYMPDISLFITLRFLTGFFVGG--IGSFVMITEVTGEKWRPFAGNLLWIFYAIALCILPLKAYFIDSWKVLVVVCSAPYLILLLTYRLVPESVRWLRLKGKSEEAVNIFKRMAKWNGKELDPALQLSKGNASKEMSSP--LDLFRPKKVAINTFIFIFGCYTNALVYYGISLAADDIGVDSIYLSFFLVSLVEFPANFLATYCCNRFGRRNSSSIPLVIAGLLTLSISFTSTKV--IRICLGMLGKLFVTLSFDAIATLLVEVYPTNIRSEAFGIINIAVYIGGASAPWVAKGFLKVLPGLPFIVMGVLGIVAGFVNHFLPETKGVEMKESIEETE 502
            R  W YAQ A S+++ +++L C  +W+++L+ +++ +G L G+  L + +D +GR  +  +S   +  T ++ A+ P+  +F+  RFL G F  G  +  +V++TE+ G K R   G ++ +F+ + + ILP  AYFI +W+ + +  + P  + LL Y +VPES RWL  + K ++A+ I +R+AK NGK L            +E+S+P  LDL R  ++   T I +F  +T+A+VY G+ +    IG  ++Y+ FF+  +VE P   L      R GRR   +   ++AG+  L  +F    +  +R  +  LG+L +T++F+ +  +  E+YPT +R+    + +     GG  AP++      V   LP I+ G+L  + G +   LPETKG+ + E++++ E
Sbjct:  128 RGGWRYAQ-AHSTIVSEFDLVCVNAWMLDLTQAILNLGFLTGAFTLGYAADRYGRIVIYLLSCLGVGVTGVVVAFAPNFPVFVIFRFLQGVFGKGTWMTCYVIVTEIVGSKQRRIVGIVIQMFFTLGIIILPGIAYFIPNWQGIQLAITLPSFLFLLYYWVVPESPRWLITRKKGDKALQILRRIAKCNGKYLSSNYS-EITVTDEEVSNPSFLDLVRTPQMRKCTLILMFAWFTSAVVYQGLVMRLGIIG-GNLYIDFFISGVVELPGALLILLTIERLGRRLPFAASNIVAGVACLVTAFLPEGIAWLRTTVATLGRLGITMAFEIVYLVNSELYPTTLRNFGVSLCSGLCDFGGIIAPFLLFRLAAVWLELPLIIFGILASICGGLVMLLPETKGIALPETVDDVE 533

The following BLAST results are available for this feature:

BLAST of TCONS_00000905-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000905-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S22A3	4.396e-63	31.30	Solute carrier family 22 member 3 OS=Homo sapiens ...	[more]

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TCONS_00000905-protein (polypeptide) - C. hemisphaerica