TCONS_00000810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000810
Unique NameTCONS_00000810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length721

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000810 ID=TCONS_00000810|Name=TCONS_00000810|organism=Clytia hemisphaerica|type=transcript|length=721bp
AAATTAAAAGgcaAAAGATCGTGAGAAATGAAGACATCCTTGGCGTTTTT
GTTCGCTGTTTTGGCTTGTGCAAGCGCGACCAACCTTTTGAGAGTGAGGA
CAATCACAAGAGTGTACACATCTTCATATCGAATCATCAAGACACCAGAA
ACATGGATCAATGCACAAAAGAAATGCAGAGCTTGTGGTGGGAACCTTGC
TACCATCACAAACCCAAGTGATCATGCTTATTTGGCTGCTCAATTGAAaa
aGATGAATATCAAGTCTGCATGGGTTGGTTTGAACGACATTAAAACAGAA
AAGACCTTTGTATGGGTAGCCGGTAGTTCCGCTTTTGGTGGAAAATCTGG
TTACAAAAAATGGTGCCCCAAAGAACCTAACAACAAAGGAAACGAGGATT
GTGTGGAACTCGTTGCCAACCATAGTAGTGCAGGACCCTGTTTGAACGAC
CTCCGTTGTTCATTTCCAACAAACAAACGAGGATATATTTGCGAGATCAT
TGCCAGCAAGACAACACATGATGTAACTATTTAGGAGAATATCCTTGTAC
TTTTAATGGTTTATTCTGAAAAACATATTTCTTTCATTTCCTTGAATGAA
TTCTAACAATATTTTCttgtttgtcattcaattccgtTCGGATTTATCAG
ATCTGTAGAAAATCTCCATGCACGAGTAAGTTCATTACGCGAGGTTTCGT
GAAATTGGGAGTTTctaaaac
Run BLAST on NCBI

transcript from alignment at sc0000005:479764..487993-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000810 ID=TCONS_00000810|Name=TCONS_00000810|organism=Clytia hemisphaerica|type=transcript|length=8230bp|location=Sequence derived from alignment at sc0000005:479764..487993- (Clytia hemisphaerica)
AAATTAAAAGGTAAGCAGTGTTATTTTATACTTCTTTACTTCAATTTCAA TGTTACATCGACCATTATGTTAGTCTTACCCGAGAGTTATTTTGATTTTC TTTTTCAGGCAAAAGATCGTGAGAAATGAAGACATCCTTGGCGTTTTTGT TCGCTGTTTTGGCTTGTGCAAGCGCGACCAGTAAATTATTTTGTTCCTAA ACTACCTTTCATGAACTCTTTCACCTTTTCCCTTCTTTTTCCTGACAAAT GATGCCAGAACCACGAGTATGGCTGTACCATTTAATATCTATACAGGGGA TGGACGTACTTTTTCTGAGGACTTATTTCTTGAAAATATATCCAAAAAAA ATGGAAAAATGGATATAAATTTAACTAAGTTGTACCTTATTCCTCCTAAT TGTACCTTATTCCTCGAAACTTCCTTGGCGGAAAACTTCTGCTCGTCCAT CCCCTTTGTATGCATATAAAATGGATTGACCAAATCTGAAGACACTTTAA TTATCAATACACGGGTTTCGAATTAAATCTGGCGCGAGAGAAAAAATCAA GTAAATAAAAGGAGCGATAAGGGGATATGCCTTATAAAAGGTTGATAGAT TTCCTTTCTTCTCTTTTGAAAGCCAGGTGTTCATTCAAAAGATGTTTTTC TATTTTAAATTCAATAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGCTTGATACAC GGCCAATTTTCGTTCTGTTTACTTGATATTTTTCGTGCAAATTTACATGG GATCAAAGCTAAAGCTAAGCAAAAATTTAATTCGAAACCGGTGTATTGTT TCCTCTCATTCGATACACGTTTTTTTTTTTAAGAAACTAGTTTTACCAAG CAGTCTCAATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTTTCT TACATGTTTCTAAATTTTTTAACATAATCAGCCTCATGGAAGGCTNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATTAAAAA ATGTTATTTTCTCATTCTCAGCCTCAGTATGTTTCTTAGATGTTTCTTAG TTTTTAGGCATTCTGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTTAAAA AAAAAAAAACGTGTATCGATCATTTGATGTTCCTTATATTGCAGACCTTT TGAGAGTGAGGACAATCACAAGAGTGTACACATCTTCATATCGAATCATC AAGACACCAGAAACATGGATCAATGCACAAAAGAAATGCAGAGCTTGTGG TGGGAACCTTGCTACCATCACAAACCCAAGTGATCATGCTTATTTGGCTG CTCAATTGAAGTAAGTTTGAACTTTTGTCTTCTCACGAAATGAAAATTCC GAGTTACTTTTTAAAAGCCCATTTGTCGGCCTTACCAATTCGTTTTGCCA TGCTGTTGGAAATAATTTTCGTATGAGGTTTCGTATAAAGCTGGCATATT TTCTGAATTCATTTAAAGTTCGGTTGCTTAACTTTCTCAGAGACAATTTT ATTTAAAAAACTTCTAAGGTAGCTCTCTTCCAATGACACTTTTTTTTACT TTAGAAAGATGAATATCAAGTCTGCATTTGTTGGTTTGAACGACTTTAAA AAAGAAAAGACCTTTGTATGGGCAGCCGGTAGTTCCGCTTTTGGTGGAAG ATCTGGCTACAAAAAATGGTGCCCCAAAGAACCAAACAACTTTCGAAACG AGGATTGTACGGAACTCATTGCCAACCATAAAGCAGGACCCTGTTTGAAC GACCTCCGCTGTTCATTCCCAAGTCACAAACGAGGATATATTTGCGAGAT CAATGCCAGCAAGACAACACAAGATGTACTTGTTTAGGAGAATATCCTTG TACTACATTTAATTTTGTTTTATTGTTGCTGGACGTAGAACGTTTTTTAG TATCTTTTTGGTTTGTCCTTTTTGGCCTTTTTTTAGGATTTTTATTGTTT TCTTTCACAGGTCTTGGTCTTGCCATTTTTTCATTTTTGGGGTAATTTAT TTATTTTATTCATAACTAATATATTCACGAATTCATGCATATCCTTGTAC TTTTCATGGTTTATTCTGAACAAAATATTTTCATTTCCTTGAATTAACAT CGACATGATTAAATTCTAACAATCTTTTCTTGTTTGTCGTTCAATTCCGT TCGGATTTACCAGATAAAATCAATGCTCGACTGTGGGCCAAACCATCTAA TAGGTCATTGTTGACGACTTTGGAATAATAACTTTTTGTATAGAATGAAT TTGTATAAAAACCACGCGGGCTGCTAAAGACCACGCAACTTAGGTAGGAT TTAGTAGACTGGAGTCGTTTATAATGCGTGTAATACTAATAATACCAATA CTAATAATAATAATAATAACAATAATACGGGATTTAGTTTGTATAAACGA CTGGAAGAATCCGGTGTTCCAGCCTTATAGATACAGGGGCTAGCTACGCA GAAACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNAAACTCTCAAAACAAAATCAACTCAAATGAAAA ACTTTCAATACACAAATCCACATACATGTTTTTCTCAAGAATTATTTTGA GCGGGAAAAAATTATAATTGAGAATATTGACACTTTTCTTTCGTTTGGAG CTAGTGCACAAAGGTTTCTAGACGACTAAAATTGTTCACTTTATTACTTT TTGCTTTATTTCTACTATGTATGAATTAGTCGTCTAGCTTGCTAGACTAA GGATTTAGCGGCTTCTATCCCTTCGGGCTTTTACTTCATTGTCCCCCCTC CAAAAAAATAATTTAAATACTCATCCAATTACTATGAAATTTTGCAAGTA TGTAACAAATATAGGTTGGCATATTTTGTGAAAATTTTGGCGTCATCAAT GACGTTATCGCCATCTGATGACATCATCAATCTTTGAAAATGCTAAAATT TTGTGAGGCAACTCCATATGACATGTATTTTTGGGTACAGGATCAATTTT TTGCAACCAAAATAGCCCTTTTTTCTGAAACACCCCTAGCTGCCTAGTTG ACAAATGCTTTTGATTTGAAATTTTGATAAGTGTTTAGAATTAATAATAC AAGCTTCTTATGCTGAAAGTGAGCATTTTAGGTTGAAACGGACCGGTTTT TAAAATACCACACGAGCATGTAATCAAATATAAATTTGGTACATTGTCAT AAATGTTAGAGATATCATTGATAGTAGTTCAAGAATTCCGGCAGGGGGTC GACGCGTATTTTACAGACTCGTCTGCAAAGTACCTAATACTCGTGGGACC AATTTTAAGTCTCTTTTATTTAACAAAATAGCCTTTAGAAAAAAAAATTA GATCGACTCAAACGTTCAACGCGTGATTTTAGCGAAATTTACATTCTGGT TTGTAAAATACCAATCAGACAGGTGGCCAAACAAAAAATTAACAAATCAA CTCCAATTATCCATATCTACCACTGGTCAAAATTTCATGTTTATAACACT TGTCAATCTTAAGAAAAAAAGTGACAAAAAAGATTTCAACAACGAAAAAA AATCACGTCACTGGAGATATGATGAATCATGAATATGAAGGACTTGAACG TTTAGTAGAAGCAACACTAGAAATGATTTATACAAAAAACCCTCTTTTTA TTTGTAATTTACAGATTGAACACTGATATTCATTTTGGACGAAACTGTGG TTTTCAAACGCTCTGCGTGCTTACTGGAATCACCTCATCAAGCGCTCTTC AGAAAGCTGAATCTGATGGAAACACTAACTTCATTCCTGATTATTTTTCG GATGACGTAAGCTCCTTCATTTTATAGTTTTATAAGATAAGAATACTTGA AATAGGTTCCCTTAACATGAAGAACTAGCCTAGCACGGAGGGCGTACGGG ACTTCGTAATACCAATATACCGATCACTTTTTACCACAATTACCGATATA CTGATAAATTTTTCATTCAAATACCGATACCGATTAATATTTCCCCATTT TTCTGGTACTCGTCCTCTGAAGGGGGTACTTAGGCAAAAATGGGTGCTGG GGTGTGAGCAGACATGAAACATGAAAATTTTCTCTTTTATCTTTTTCTCA TTTAAAAAATACTTTTTTCACCCAACCAATGTAAAAAGAATTTCTCATGC GTATCTCCTTGACTACATTCAACATGAAAGAGCATGTGGTACATCGAAAA TAAATTTCAAATTTCGAAATAGAAAAAAAATTTCTAAAAATATTTTGTCG AAATTTTTTTGATTTATTCATTTAAAGATTTTTCAAATTTTTCAGCTGGC GGTAAAAAAAAGCTCCGTTCGCGAGGCGCCAAAGATGATTTTTCCGTCTG CTAAAGGTAGACCTGAATTAACAGTTGCAGACCCGATTAAGCGGTCGAAG ACCTGAATTAACAGCCTAAAATAAAAACTGATTTAACGGCCTAAAACCTG AATTAACAGCCTAAAACCTGAATTAACGGCTGAAACCTGAATCAACGGCC GAAAACCTGAATTAACGGCCGAAAACCTAGAAAAAATACATTGAGGGGAA ATTTGTTATTGATCTTTTTTATGAATTCAATCAAGATATTATATGATGTT TCAGTGGAAATATTATTGGAAAAAAGTTAAGTTAAGATATTTTAAACTCA AAATAATGAAAATTAATGACAAAACCTCATCTTTACTCGTGAGCGCGCTG AGTCGGATGAATGAACATTACGACATGGTATTAGGGAACTTTCAAAAAGA TTTTCCCAAAAATCAATAAGCGGGGGGTCGGAATAAGAATGTCCTCGGTG GAAAATTTTTGAAAAATTAATTAACGGGACCCCTCGGCTATTACCTTATC GGCCAAAACTTAGTTGGCTTCCGAAGTTTTTGCTTATAAGAAAAAGTTTT TAACGACATCCTCCTTTCAAATGGATAAAAAATCAACTAAGAAATGGCAT CTTACTAAGATGATAAATTTTTGACTGTTGCACAATTTGAAAACGTTATC ATTCGAAACGCATGTCGTGTTCTAAACCTCAATCGTGAATGGTGCACGTG CAAGAATTTGAAATCCTTTCTTTTTTTTTTAGTTGACAACGTTATGCGGT GCAGAGACCTGAAAAGAAGAAGAATTAGGATAATTTAAATTTGATAGATT GATAGATTTAATTTTAGAAAATTCTGTTTTTATAATTATTTGAATAGTTT TATAAGCAACTGTCAAATTTTGAGTTTCTACCAAAAATAAAATCGAGAAA ATTTTATTATATACGAAATTTACTTGAACTAAACGCCCCCTAAACGCCCA TCTGGCAGGAATCCTTCTAAACCTTAAGAATCGTTGAAAGTGAGTTAAAC TGAGTTAGACTTAAAACTTTCAAAATCATAGATTTGCTTGGAAAATCTTC AAACAAGATTTTGTTCTCCGATTCTTCTTAAGATTCTATCAACTAGAAAA AATAAGGGACTTTCGTTTTGACAGTTGAAAATATTCCAACACTTAACGCG AGTCGGGGGATTGGGAAAAAATTAAACAAGTGGAAAGGCCCGTTTATTAG ACACCTGAGAGTAGGTAAGAATCATATCCTAAAAGTTTTAAGTTCCAGTC ATTTTTAAGACACTCTTCTAAGTGCATCTACTGAAGTATTTTCCATCAAA ATTAGAAAATGTATTGAACTTTTTCGGGAGACTAAGTCGACCAAAATGAG GCAAATGACCCCATTTGGAAAAACTACTCTTCAAGCTCTATCAGATGGTA TGATCAGTTTTTGCATGGATATACAAACGACTGGGCGTCTATCTTCTATT ATGTCTTTGAAGTGAGTTTCGTTGCCGCCTGTTTATCCAATTTGTTATAA AAATTCCGACAATTTTATTTCTTTGAATTACTTAGCTAAAAGGATTGACA GAGCTTGAAGATTACTCGTAATTCACAAAAAAATTAATCCCGAATTTTTT CATGAGTTTGCAATGTATTTCGTCAAAATTTTTCAACACTGAAATGCAGA ATGTCAACTTCGTGTATAATACTTTGGAATCACTTCTGTAGCTCCAATGA ATTTTTTTTATGACTGGAAAAAAATAGTATGCCAAAGTTGAGAGACTGTG TCATAAGAATATAATAATTTGAATCTCATCATACTCTTCAAAATAATTCC ATACTTTTGAGTCAAAATTTAGAAATATTAGTCAGAGTTTTGACAAGGTG ACGATGATTTTGCCTCTGTTATCTTTTATTTGATGCTTATAAGTAGATGC TTATAAGAAAAATAAATAGGCTCATATCGTGCACTGTCCTGTTGTCGCAA CAAAATAGATAGAAGAGTTAGGAATGACCATATAAGGATTGTTTTGAACA AGACCAAGTCTCTGGCATGGTGTTTTTCCAAAGATGGGTGAGAATCTATA TAAAGTGTGGTGCAAAGAATCGATAAATCATTCCTTCATTGCTTTTGTTT CTGTCATCTAAATTTAAAAGGTAAGCAGTGTTTTTTTATACTTCTTTACT TCAATTTCAATGTTACATCGACCATTATGTTAGTCTTCTTACCCGAGAGT TATTTTGATTTTCTTTTTCAGGCAAAAGATCGTGAACAATGAAGACATCC TTGGCGTTTTTGTTCGCTGTTTTGGCTTGTGCAAGCACGACCAGTAAATT ATTTTGTTCCTAAACTACCTTTCATGAACTCTTTTACCATTTCCCTTCTT TTTCATTACAAACGATGCTAGAAACACGAGTATGGCTGTACCATTTAATA TCTATACAGGGGACGAGGTTCGAAAAATGAACACTACGTGGGACTCGTTT TTTCAAAAATTTTGCCGAAATTTGCGAAAAAAGTTACCTTGAAAGATTTT CTCAAAATCTTTCTATTTTGGTGTTTTTGCGCGGGTTTTTTGGGATTTGT AGAGGTTAGAAAAGGTACCCTGACCACCGGCGCACCCCCCTTAACCCATA TATGCATATACAATGGATTGACCAAATCTGTACGTGTAGACACTTAAATT ATCTACTGTTTCTTCTCCATTTGATGCAGACCTTTTGAGATTAAGGACAA TCACGAGGACAATCACGAGAGTGTACGCATCTTCATATCACATCATCAAG ACACCAGAATTATGGATCAATGCACAAAAGAAATGTAAAGCTTGTGGCGG GAACCTTGCTACCATCACAAACCCAAATGATCATGCTTATTTGGCTGCTC AATTGAAGTAAGTTTGAACTTTTGTCTTCTCACGAAATGAAAATTCCGAG TTACTTTTCAAAAGCCCATTTGTCGGCCTTACCAATTCGTTTTGCCATGC TGTTGGAAATGATTTTCGTATGAGGTTTCGTATAAAGCTGGTATATTTTC TGAATTCATTTAAAGTTCGGTTGCTTTACTTTCTCAGAGATTTTTTTTTG ACTTTATTAAAAAACTTCTATGGTAGCTGTCTTACAATGACACTTTTTTT ACTTTAGAAAGATGAATATCAAGTCTGCATGGGTTGGTTTGAACGACATT AAAACAGAAAAGACCTTTGTATGGGTAGCCGGTAGTTCCGCTTTTGGTGG AAAATCTGGTTACAAAAAATGGTGCCCCAAAGAACCTAACAACAAAGGAA ACGAGGATTGTGTGGAACTCGTTGCCAACCATAGTAGTGCAGGACCCTGT TTGAACGACCTCCGTTGTTCATTTCCAACAAACAAACGAGGATATATTTG CGAGATCATTGCCAGCAAGACAACACATGATGTAACTATTTAGGAGAATA TCCTTGTACTTTTAATGGTTTATTCTGAAAAACATATTTCTTTCATTTCC TTGAATGAATTCTAACAATATTTTCTTGTTTGTCATTCAATTCCGTTCGG ATTTATCAGATCTGTAGAAAATCTCCATGCACGAGTAAGTTCATTACGCG AGGTTTCGTGAAATTGGGAGTTTCTAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000486XLOC_000486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000810-exon-sc0000005-1575043694:487984..487993TCONS_00000810-exon-sc0000005-1575043694:487984..487993Clytia hemisphaericaexon
TCONS_00000810-exon-sc0000005-1575043694:487814..487885TCONS_00000810-exon-sc0000005-1575043694:487814..487885Clytia hemisphaericaexon
TCONS_00000810-exon-sc0000005-1575043694:486484..486649TCONS_00000810-exon-sc0000005-1575043694:486484..486649Clytia hemisphaericaexon
TCONS_00000810-exon-sc0000005-1575043694:479764..480236TCONS_00000810-exon-sc0000005-1575043694:479764..480236Clytia hemisphaericaexon
TCONS_00000810-exon-sc0000005-1510915933:487984..487993TCONS_00000810-exon-sc0000005-1510915933:487984..487993Clytia hemisphaericaexon
TCONS_00000810-exon-sc0000005-1510915933:487814..487885TCONS_00000810-exon-sc0000005-1510915933:487814..487885Clytia hemisphaericaexon
TCONS_00000810-exon-sc0000005-1510915933:486484..486649TCONS_00000810-exon-sc0000005-1510915933:486484..486649Clytia hemisphaericaexon
TCONS_00000810-exon-sc0000005-1510915933:479764..480236TCONS_00000810-exon-sc0000005-1510915933:479764..480236Clytia hemisphaericaexon
TCONS_00000810-exon-sc0000005-1491911889:487984..487993TCONS_00000810-exon-sc0000005-1491911889:487984..487993Clytia hemisphaericaexon
TCONS_00000810-exon-sc0000005-1491911889:487814..487885TCONS_00000810-exon-sc0000005-1491911889:487814..487885Clytia hemisphaericaexon
TCONS_00000810-exon-sc0000005-1491911889:486484..486649TCONS_00000810-exon-sc0000005-1491911889:486484..486649Clytia hemisphaericaexon
TCONS_00000810-exon-sc0000005-1491911889:479764..480236TCONS_00000810-exon-sc0000005-1491911889:479764..480236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:479764..487993 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0752679 0 0.0866589 0.105424 0.0738413 0 0 0 0 0.84144 0.268247 2.44556 4.51387 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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