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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000810 ID=TCONS_00000810|Name=TCONS_00000810|organism=Clytia hemisphaerica|type=transcript|length=721bp
AAATTAAAAGgcaAAAGATCGTGAGAAATGAAGACATCCTTGGCGTTTTT
GTTCGCTGTTTTGGCTTGTGCAAGCGCGACCAACCTTTTGAGAGTGAGGA
CAATCACAAGAGTGTACACATCTTCATATCGAATCATCAAGACACCAGAA
ACATGGATCAATGCACAAAAGAAATGCAGAGCTTGTGGTGGGAACCTTGC
TACCATCACAAACCCAAGTGATCATGCTTATTTGGCTGCTCAATTGAAaa
aGATGAATATCAAGTCTGCATGGGTTGGTTTGAACGACATTAAAACAGAA
AAGACCTTTGTATGGGTAGCCGGTAGTTCCGCTTTTGGTGGAAAATCTGG
TTACAAAAAATGGTGCCCCAAAGAACCTAACAACAAAGGAAACGAGGATT
GTGTGGAACTCGTTGCCAACCATAGTAGTGCAGGACCCTGTTTGAACGAC
CTCCGTTGTTCATTTCCAACAAACAAACGAGGATATATTTGCGAGATCAT
TGCCAGCAAGACAACACATGATGTAACTATTTAGGAGAATATCCTTGTAC
TTTTAATGGTTTATTCTGAAAAACATATTTCTTTCATTTCCTTGAATGAA
TTCTAACAATATTTTCttgtttgtcattcaattccgtTCGGATTTATCAG
ATCTGTAGAAAATCTCCATGCACGAGTAAGTTCATTACGCGAGGTTTCGT
GAAATTGGGAGTTTctaaaac Run BLAST on NCBI transcript from alignment at sc0000005:479764..487993- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000810 ID=TCONS_00000810|Name=TCONS_00000810|organism=Clytia hemisphaerica|type=transcript|length=8230bp|location=Sequence derived from alignment at sc0000005:479764..487993- (Clytia hemisphaerica)
AAATTAAAAGGTAAGCAGTGTTATTTTATACTTCTTTACTTCAATTTCAA
TGTTACATCGACCATTATGTTAGTCTTACCCGAGAGTTATTTTGATTTTC
TTTTTCAGGCAAAAGATCGTGAGAAATGAAGACATCCTTGGCGTTTTTGT
TCGCTGTTTTGGCTTGTGCAAGCGCGACCAGTAAATTATTTTGTTCCTAA
ACTACCTTTCATGAACTCTTTCACCTTTTCCCTTCTTTTTCCTGACAAAT
GATGCCAGAACCACGAGTATGGCTGTACCATTTAATATCTATACAGGGGA
TGGACGTACTTTTTCTGAGGACTTATTTCTTGAAAATATATCCAAAAAAA
ATGGAAAAATGGATATAAATTTAACTAAGTTGTACCTTATTCCTCCTAAT
TGTACCTTATTCCTCGAAACTTCCTTGGCGGAAAACTTCTGCTCGTCCAT
CCCCTTTGTATGCATATAAAATGGATTGACCAAATCTGAAGACACTTTAA
TTATCAATACACGGGTTTCGAATTAAATCTGGCGCGAGAGAAAAAATCAA
GTAAATAAAAGGAGCGATAAGGGGATATGCCTTATAAAAGGTTGATAGAT
TTCCTTTCTTCTCTTTTGAAAGCCAGGTGTTCATTCAAAAGATGTTTTTC
TATTTTAAATTCAATAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGCTTGATACAC
GGCCAATTTTCGTTCTGTTTACTTGATATTTTTCGTGCAAATTTACATGG
GATCAAAGCTAAAGCTAAGCAAAAATTTAATTCGAAACCGGTGTATTGTT
TCCTCTCATTCGATACACGTTTTTTTTTTTAAGAAACTAGTTTTACCAAG
CAGTCTCAATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTTTCT
TACATGTTTCTAAATTTTTTAACATAATCAGCCTCATGGAAGGCTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATTAAAAA
ATGTTATTTTCTCATTCTCAGCCTCAGTATGTTTCTTAGATGTTTCTTAG
TTTTTAGGCATTCTGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTTAAAA
AAAAAAAAACGTGTATCGATCATTTGATGTTCCTTATATTGCAGACCTTT
TGAGAGTGAGGACAATCACAAGAGTGTACACATCTTCATATCGAATCATC
AAGACACCAGAAACATGGATCAATGCACAAAAGAAATGCAGAGCTTGTGG
TGGGAACCTTGCTACCATCACAAACCCAAGTGATCATGCTTATTTGGCTG
CTCAATTGAAGTAAGTTTGAACTTTTGTCTTCTCACGAAATGAAAATTCC
GAGTTACTTTTTAAAAGCCCATTTGTCGGCCTTACCAATTCGTTTTGCCA
TGCTGTTGGAAATAATTTTCGTATGAGGTTTCGTATAAAGCTGGCATATT
TTCTGAATTCATTTAAAGTTCGGTTGCTTAACTTTCTCAGAGACAATTTT
ATTTAAAAAACTTCTAAGGTAGCTCTCTTCCAATGACACTTTTTTTTACT
TTAGAAAGATGAATATCAAGTCTGCATTTGTTGGTTTGAACGACTTTAAA
AAAGAAAAGACCTTTGTATGGGCAGCCGGTAGTTCCGCTTTTGGTGGAAG
ATCTGGCTACAAAAAATGGTGCCCCAAAGAACCAAACAACTTTCGAAACG
AGGATTGTACGGAACTCATTGCCAACCATAAAGCAGGACCCTGTTTGAAC
GACCTCCGCTGTTCATTCCCAAGTCACAAACGAGGATATATTTGCGAGAT
CAATGCCAGCAAGACAACACAAGATGTACTTGTTTAGGAGAATATCCTTG
TACTACATTTAATTTTGTTTTATTGTTGCTGGACGTAGAACGTTTTTTAG
TATCTTTTTGGTTTGTCCTTTTTGGCCTTTTTTTAGGATTTTTATTGTTT
TCTTTCACAGGTCTTGGTCTTGCCATTTTTTCATTTTTGGGGTAATTTAT
TTATTTTATTCATAACTAATATATTCACGAATTCATGCATATCCTTGTAC
TTTTCATGGTTTATTCTGAACAAAATATTTTCATTTCCTTGAATTAACAT
CGACATGATTAAATTCTAACAATCTTTTCTTGTTTGTCGTTCAATTCCGT
TCGGATTTACCAGATAAAATCAATGCTCGACTGTGGGCCAAACCATCTAA
TAGGTCATTGTTGACGACTTTGGAATAATAACTTTTTGTATAGAATGAAT
TTGTATAAAAACCACGCGGGCTGCTAAAGACCACGCAACTTAGGTAGGAT
TTAGTAGACTGGAGTCGTTTATAATGCGTGTAATACTAATAATACCAATA
CTAATAATAATAATAATAACAATAATACGGGATTTAGTTTGTATAAACGA
CTGGAAGAATCCGGTGTTCCAGCCTTATAGATACAGGGGCTAGCTACGCA
GAAACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAACTCTCAAAACAAAATCAACTCAAATGAAAA
ACTTTCAATACACAAATCCACATACATGTTTTTCTCAAGAATTATTTTGA
GCGGGAAAAAATTATAATTGAGAATATTGACACTTTTCTTTCGTTTGGAG
CTAGTGCACAAAGGTTTCTAGACGACTAAAATTGTTCACTTTATTACTTT
TTGCTTTATTTCTACTATGTATGAATTAGTCGTCTAGCTTGCTAGACTAA
GGATTTAGCGGCTTCTATCCCTTCGGGCTTTTACTTCATTGTCCCCCCTC
CAAAAAAATAATTTAAATACTCATCCAATTACTATGAAATTTTGCAAGTA
TGTAACAAATATAGGTTGGCATATTTTGTGAAAATTTTGGCGTCATCAAT
GACGTTATCGCCATCTGATGACATCATCAATCTTTGAAAATGCTAAAATT
TTGTGAGGCAACTCCATATGACATGTATTTTTGGGTACAGGATCAATTTT
TTGCAACCAAAATAGCCCTTTTTTCTGAAACACCCCTAGCTGCCTAGTTG
ACAAATGCTTTTGATTTGAAATTTTGATAAGTGTTTAGAATTAATAATAC
AAGCTTCTTATGCTGAAAGTGAGCATTTTAGGTTGAAACGGACCGGTTTT
TAAAATACCACACGAGCATGTAATCAAATATAAATTTGGTACATTGTCAT
AAATGTTAGAGATATCATTGATAGTAGTTCAAGAATTCCGGCAGGGGGTC
GACGCGTATTTTACAGACTCGTCTGCAAAGTACCTAATACTCGTGGGACC
AATTTTAAGTCTCTTTTATTTAACAAAATAGCCTTTAGAAAAAAAAATTA
GATCGACTCAAACGTTCAACGCGTGATTTTAGCGAAATTTACATTCTGGT
TTGTAAAATACCAATCAGACAGGTGGCCAAACAAAAAATTAACAAATCAA
CTCCAATTATCCATATCTACCACTGGTCAAAATTTCATGTTTATAACACT
TGTCAATCTTAAGAAAAAAAGTGACAAAAAAGATTTCAACAACGAAAAAA
AATCACGTCACTGGAGATATGATGAATCATGAATATGAAGGACTTGAACG
TTTAGTAGAAGCAACACTAGAAATGATTTATACAAAAAACCCTCTTTTTA
TTTGTAATTTACAGATTGAACACTGATATTCATTTTGGACGAAACTGTGG
TTTTCAAACGCTCTGCGTGCTTACTGGAATCACCTCATCAAGCGCTCTTC
AGAAAGCTGAATCTGATGGAAACACTAACTTCATTCCTGATTATTTTTCG
GATGACGTAAGCTCCTTCATTTTATAGTTTTATAAGATAAGAATACTTGA
AATAGGTTCCCTTAACATGAAGAACTAGCCTAGCACGGAGGGCGTACGGG
ACTTCGTAATACCAATATACCGATCACTTTTTACCACAATTACCGATATA
CTGATAAATTTTTCATTCAAATACCGATACCGATTAATATTTCCCCATTT
TTCTGGTACTCGTCCTCTGAAGGGGGTACTTAGGCAAAAATGGGTGCTGG
GGTGTGAGCAGACATGAAACATGAAAATTTTCTCTTTTATCTTTTTCTCA
TTTAAAAAATACTTTTTTCACCCAACCAATGTAAAAAGAATTTCTCATGC
GTATCTCCTTGACTACATTCAACATGAAAGAGCATGTGGTACATCGAAAA
TAAATTTCAAATTTCGAAATAGAAAAAAAATTTCTAAAAATATTTTGTCG
AAATTTTTTTGATTTATTCATTTAAAGATTTTTCAAATTTTTCAGCTGGC
GGTAAAAAAAAGCTCCGTTCGCGAGGCGCCAAAGATGATTTTTCCGTCTG
CTAAAGGTAGACCTGAATTAACAGTTGCAGACCCGATTAAGCGGTCGAAG
ACCTGAATTAACAGCCTAAAATAAAAACTGATTTAACGGCCTAAAACCTG
AATTAACAGCCTAAAACCTGAATTAACGGCTGAAACCTGAATCAACGGCC
GAAAACCTGAATTAACGGCCGAAAACCTAGAAAAAATACATTGAGGGGAA
ATTTGTTATTGATCTTTTTTATGAATTCAATCAAGATATTATATGATGTT
TCAGTGGAAATATTATTGGAAAAAAGTTAAGTTAAGATATTTTAAACTCA
AAATAATGAAAATTAATGACAAAACCTCATCTTTACTCGTGAGCGCGCTG
AGTCGGATGAATGAACATTACGACATGGTATTAGGGAACTTTCAAAAAGA
TTTTCCCAAAAATCAATAAGCGGGGGGTCGGAATAAGAATGTCCTCGGTG
GAAAATTTTTGAAAAATTAATTAACGGGACCCCTCGGCTATTACCTTATC
GGCCAAAACTTAGTTGGCTTCCGAAGTTTTTGCTTATAAGAAAAAGTTTT
TAACGACATCCTCCTTTCAAATGGATAAAAAATCAACTAAGAAATGGCAT
CTTACTAAGATGATAAATTTTTGACTGTTGCACAATTTGAAAACGTTATC
ATTCGAAACGCATGTCGTGTTCTAAACCTCAATCGTGAATGGTGCACGTG
CAAGAATTTGAAATCCTTTCTTTTTTTTTTAGTTGACAACGTTATGCGGT
GCAGAGACCTGAAAAGAAGAAGAATTAGGATAATTTAAATTTGATAGATT
GATAGATTTAATTTTAGAAAATTCTGTTTTTATAATTATTTGAATAGTTT
TATAAGCAACTGTCAAATTTTGAGTTTCTACCAAAAATAAAATCGAGAAA
ATTTTATTATATACGAAATTTACTTGAACTAAACGCCCCCTAAACGCCCA
TCTGGCAGGAATCCTTCTAAACCTTAAGAATCGTTGAAAGTGAGTTAAAC
TGAGTTAGACTTAAAACTTTCAAAATCATAGATTTGCTTGGAAAATCTTC
AAACAAGATTTTGTTCTCCGATTCTTCTTAAGATTCTATCAACTAGAAAA
AATAAGGGACTTTCGTTTTGACAGTTGAAAATATTCCAACACTTAACGCG
AGTCGGGGGATTGGGAAAAAATTAAACAAGTGGAAAGGCCCGTTTATTAG
ACACCTGAGAGTAGGTAAGAATCATATCCTAAAAGTTTTAAGTTCCAGTC
ATTTTTAAGACACTCTTCTAAGTGCATCTACTGAAGTATTTTCCATCAAA
ATTAGAAAATGTATTGAACTTTTTCGGGAGACTAAGTCGACCAAAATGAG
GCAAATGACCCCATTTGGAAAAACTACTCTTCAAGCTCTATCAGATGGTA
TGATCAGTTTTTGCATGGATATACAAACGACTGGGCGTCTATCTTCTATT
ATGTCTTTGAAGTGAGTTTCGTTGCCGCCTGTTTATCCAATTTGTTATAA
AAATTCCGACAATTTTATTTCTTTGAATTACTTAGCTAAAAGGATTGACA
GAGCTTGAAGATTACTCGTAATTCACAAAAAAATTAATCCCGAATTTTTT
CATGAGTTTGCAATGTATTTCGTCAAAATTTTTCAACACTGAAATGCAGA
ATGTCAACTTCGTGTATAATACTTTGGAATCACTTCTGTAGCTCCAATGA
ATTTTTTTTATGACTGGAAAAAAATAGTATGCCAAAGTTGAGAGACTGTG
TCATAAGAATATAATAATTTGAATCTCATCATACTCTTCAAAATAATTCC
ATACTTTTGAGTCAAAATTTAGAAATATTAGTCAGAGTTTTGACAAGGTG
ACGATGATTTTGCCTCTGTTATCTTTTATTTGATGCTTATAAGTAGATGC
TTATAAGAAAAATAAATAGGCTCATATCGTGCACTGTCCTGTTGTCGCAA
CAAAATAGATAGAAGAGTTAGGAATGACCATATAAGGATTGTTTTGAACA
AGACCAAGTCTCTGGCATGGTGTTTTTCCAAAGATGGGTGAGAATCTATA
TAAAGTGTGGTGCAAAGAATCGATAAATCATTCCTTCATTGCTTTTGTTT
CTGTCATCTAAATTTAAAAGGTAAGCAGTGTTTTTTTATACTTCTTTACT
TCAATTTCAATGTTACATCGACCATTATGTTAGTCTTCTTACCCGAGAGT
TATTTTGATTTTCTTTTTCAGGCAAAAGATCGTGAACAATGAAGACATCC
TTGGCGTTTTTGTTCGCTGTTTTGGCTTGTGCAAGCACGACCAGTAAATT
ATTTTGTTCCTAAACTACCTTTCATGAACTCTTTTACCATTTCCCTTCTT
TTTCATTACAAACGATGCTAGAAACACGAGTATGGCTGTACCATTTAATA
TCTATACAGGGGACGAGGTTCGAAAAATGAACACTACGTGGGACTCGTTT
TTTCAAAAATTTTGCCGAAATTTGCGAAAAAAGTTACCTTGAAAGATTTT
CTCAAAATCTTTCTATTTTGGTGTTTTTGCGCGGGTTTTTTGGGATTTGT
AGAGGTTAGAAAAGGTACCCTGACCACCGGCGCACCCCCCTTAACCCATA
TATGCATATACAATGGATTGACCAAATCTGTACGTGTAGACACTTAAATT
ATCTACTGTTTCTTCTCCATTTGATGCAGACCTTTTGAGATTAAGGACAA
TCACGAGGACAATCACGAGAGTGTACGCATCTTCATATCACATCATCAAG
ACACCAGAATTATGGATCAATGCACAAAAGAAATGTAAAGCTTGTGGCGG
GAACCTTGCTACCATCACAAACCCAAATGATCATGCTTATTTGGCTGCTC
AATTGAAGTAAGTTTGAACTTTTGTCTTCTCACGAAATGAAAATTCCGAG
TTACTTTTCAAAAGCCCATTTGTCGGCCTTACCAATTCGTTTTGCCATGC
TGTTGGAAATGATTTTCGTATGAGGTTTCGTATAAAGCTGGTATATTTTC
TGAATTCATTTAAAGTTCGGTTGCTTTACTTTCTCAGAGATTTTTTTTTG
ACTTTATTAAAAAACTTCTATGGTAGCTGTCTTACAATGACACTTTTTTT
ACTTTAGAAAGATGAATATCAAGTCTGCATGGGTTGGTTTGAACGACATT
AAAACAGAAAAGACCTTTGTATGGGTAGCCGGTAGTTCCGCTTTTGGTGG
AAAATCTGGTTACAAAAAATGGTGCCCCAAAGAACCTAACAACAAAGGAA
ACGAGGATTGTGTGGAACTCGTTGCCAACCATAGTAGTGCAGGACCCTGT
TTGAACGACCTCCGTTGTTCATTTCCAACAAACAAACGAGGATATATTTG
CGAGATCATTGCCAGCAAGACAACACATGATGTAACTATTTAGGAGAATA
TCCTTGTACTTTTAATGGTTTATTCTGAAAAACATATTTCTTTCATTTCC
TTGAATGAATTCTAACAATATTTTCTTGTTTGTCATTCAATTCCGTTCGG
ATTTATCAGATCTGTAGAAAATCTCCATGCACGAGTAAGTTCATTACGCG
AGGTTTCGTGAAATTGGGAGTTTCTAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000810-exon-sc0000005-1575043694:487984..487993 | TCONS_00000810-exon-sc0000005-1575043694:487984..487993 | Clytia hemisphaerica | exon |
| TCONS_00000810-exon-sc0000005-1575043694:487814..487885 | TCONS_00000810-exon-sc0000005-1575043694:487814..487885 | Clytia hemisphaerica | exon |
| TCONS_00000810-exon-sc0000005-1575043694:486484..486649 | TCONS_00000810-exon-sc0000005-1575043694:486484..486649 | Clytia hemisphaerica | exon |
| TCONS_00000810-exon-sc0000005-1575043694:479764..480236 | TCONS_00000810-exon-sc0000005-1575043694:479764..480236 | Clytia hemisphaerica | exon |
| TCONS_00000810-exon-sc0000005-1510915933:487984..487993 | TCONS_00000810-exon-sc0000005-1510915933:487984..487993 | Clytia hemisphaerica | exon |
| TCONS_00000810-exon-sc0000005-1510915933:487814..487885 | TCONS_00000810-exon-sc0000005-1510915933:487814..487885 | Clytia hemisphaerica | exon |
| TCONS_00000810-exon-sc0000005-1510915933:486484..486649 | TCONS_00000810-exon-sc0000005-1510915933:486484..486649 | Clytia hemisphaerica | exon |
| TCONS_00000810-exon-sc0000005-1510915933:479764..480236 | TCONS_00000810-exon-sc0000005-1510915933:479764..480236 | Clytia hemisphaerica | exon |
| TCONS_00000810-exon-sc0000005-1491911889:487984..487993 | TCONS_00000810-exon-sc0000005-1491911889:487984..487993 | Clytia hemisphaerica | exon |
| TCONS_00000810-exon-sc0000005-1491911889:487814..487885 | TCONS_00000810-exon-sc0000005-1491911889:487814..487885 | Clytia hemisphaerica | exon |
| TCONS_00000810-exon-sc0000005-1491911889:486484..486649 | TCONS_00000810-exon-sc0000005-1491911889:486484..486649 | Clytia hemisphaerica | exon |
| TCONS_00000810-exon-sc0000005-1491911889:479764..480236 | TCONS_00000810-exon-sc0000005-1491911889:479764..480236 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:479764..487993 - |
Blast
The following BLAST results are available for this feature:
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