TCONS_00000766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000766
Unique NameTCONS_00000766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000766 ID=TCONS_00000766|Name=TCONS_00000766|organism=Clytia hemisphaerica|type=transcript|length=669bp
NGGGTGACCATGTTGTCTCTATCGATGAGGACAATGTCATAAATGTGTGG
TCATCAGCAAGAGCTGACAATCGAGAAACATATCTCAACTTTGCTTTGGA
CAAAGATGTCTTCTCTATTACATGTTGCATTCATCCAAGCACATACCTCA
ACAAGATTTTACTTGGTTCAAAACAAGGAAAGTTACAACTATGGAATATC
AGGACCAAcaAGATGATTCACGAATTTAAAGGCTGGGAAGAACCAGTTGT
GGTTATGGAACAGTCTCCAGCTATTGATGTCATCGGGATAGGCCTACAGA
GTGGTCATGTCATCCTTTAtaatatcaaatttgaaaagaaattaatGTCT
TTTCATCAAGACTTTGGCAATATCACCTCAATTGCCTTTAGAACTGACGG
ACAGCCAGTCATGGCAACAGGAAGCACTATTGGTCACGTGACTTTCTGGG
ACTTGGAGAAGAAACGTTTGATCACTGTCCTGAGACATGCTCATGTAAAT
TCTGTCAGTGGCatgaaatttcttcaaagaCAACCTACAATGATCACCTC
AAGTCCTGACAACTCTTTAAAGATGTGGATATTTGATAACCCAGATGGAA
GTGCAAGACTGTTGAGANtatattttacgagttccgagatttttccgtaa
tatttttccgagcctttag
Run BLAST on NCBI

transcript from alignment at sc0000005:154982..158622-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000766 ID=TCONS_00000766|Name=TCONS_00000766|organism=Clytia hemisphaerica|type=transcript|length=3641bp|location=Sequence derived from alignment at sc0000005:154982..158622- (Clytia hemisphaerica)
NGGGTGACCATGTTGTCTCTATCGATGAGGACAATGTCATAAATGTGTGG TCATCAGCAAGAGCTGACAATCGAGGTTAGTTCTAATGTAACTAGTGCTT TGAGATTTGATCATTAAAATCATTCTCGAATTCCACACTCTATACAAAGA TTATCGATTCTGATATTTAAAAACAAAACTTGCATAATTTCGAACTTTCA TTTTGATGAGTTCTTTCTAGACGAAAAAAAGATAGTAACAAGACTTCTTT CTGTAGGGANTATTTGCAAGAGACCTACTTGAAAAAGCCTGAGGCTATTA TTATGTCAGTCAAATAGATGTTTTGGCGAATGCCACAGTCTTTTGAATAA CTAATTACTCCACATACATTACTTTCCCTCAGCCAATGAAAACATAATAA ATTATCTTGTCTCTACGACTCTAGATAAACTCCTATGGAGTAATTAGTTA TTTAAAAGACCGTCACGTTAGCCAAAACAACTAAATCTTTCTATTTTATT CTTTTAATTTCAGTCAACAAAGCTATTCCTTCGAGATGTTGGTAAGAATA ACATTCTTATTATTATATCTCACAATAAAGTTTTCCTAAAGGAACATCTT CAACGTTTGATGTGATATTTTAACTAATTTTACCAGACCATAATGGTCTT CTCCTTGTGCATTAATTTGAAAAATTTAATTTAAAATTATATTATATATA TGGCTCTCCTAATGTATCAATTACTCTTTGATAATTAAAGAAAGGAAAAA TTAACTTTATGTTTGATGCATGCTTTCTTTACCTTAATAATTTATCCATC TTTTAAGGTGTAACCCTACCAGAAGAAATCACTAAACTGCATTTCTTAAG ACAAGGTGCCATTTTAGCGGCTGCTGGTTCAAACATTTATATTCTAAAGC CATACAAACATCATGTTGTAAGTCAAATTTTTTGAATAATTTGTAATTGC AGAATATCTATGCAGTCCGATTTTTTTAATCAGCATGTCTTTTTTTGAAG TTTATCTGTTTTGTTTCTAAAATTTAATCGAACATAAATTTTTCAGTTTG TTCTCTTACTTATTAAATCTTTGATCTTTGGGCCCACTGTCCTATAAATT CTAACCTTTATACCAGTCATTCATTTGTCCTTCTCAGCTCATTTCGTTAT TATTACTTTTTGATGCCAGAAATATGCTGGAAATCACAATTTGTCAATTC ATTAGCAAGCTTATCATTTTCAGCTTGCTGTGTATAGTGAACATAATGCA GATATACATACGTTAGTCAGCCTGGGTGACCATGTTGTCTCTATCGATGA GGACAATGTCTTAAATGTGTGGTCATCAGCAAGAGCTGACAATCGAGGTT AGTTCTAATGTAACTAGTGCTTTGAGATTTGATCATTAAAATCATTCTCG AATTCCACACTCTATACAAAGATTATCGATTCTGATATTTAAAAACAAAA CTTGCATAATTTCGAACTTTCATTTTGATGAGTTCTTTCTAGACGAAAAA AAGATAGTAACAAGACTTCTTTCTGTAGGGAGAACTAACAGTGTTTTATC ATTCTTTCTTATTTTCTTTTTATAACATAGAAACATATCTCAACTTTGCT TTGGACAAAGATGTCTTCTCTATTACATGTTGCATTCATCCAAGCACATA CCTCAACAAGATTTTACTTGGTTCAAAACAAGGAAAGTTACAACTATGGA ATATCAGGACCAAGTAAGCCTCCTCCTAATGTTGGAGTTGATCTCAGAAG ATTTTCAATAACAATAAGCGCCTTTTCAATATTCAAGAGTTTGCTTAGAC TGGCTTAGACTTTAACCTCAGAAGATTTTCAATAAACGCCTTTTCAATAT TTAAGATTCTACTTAGACTATTGCTAATTTACTTTGATTTTAAATAATGT CCAGACCACAATTTCTGCTCATCAGTCAATTTATAAATGTAAAATATCAC ATCATAAAAACGTGTCGTCAGTAGCATGAGTTTTTCATAACTTTTCAGGT TCTCTTGACAAAAATTTTTCTTTTCTTTAGCAAGATGATTCACGAATTTA AAGGCTGGGAAGAACCAGTTGTGGTTATGGAACAGGTATGATTTAGAAAT TTGAAAAATAAACAAATCAAAAAAGGATTTCAACCCTCTACTACAACTTA TTCATCTTTGAGAATAAACTATTTGGCTTTAACCATATCATAGCTCTTTG TGTTATTAATCTGATCGTTAGAATTATAAAATCAGATAAAGCAAGAATTG TTACATAATGATAATGTTGAATATTTTCTTTCAGTCTCCAGCTATTGATG TCATCGGGATAGGCCTACAGAGTGGTCATGTCATCCTTTATAATATCAAA TTTGAAAAGAAATTAATGTCTTTTCATCAAGACTTTGGCAATATCACCTC AATTGCCTTTAGAACTGGTAAGCTTTTGCACCTGTTATGATGTTTTGTAA ATTTAGATCACTTATCAAATCATTCCCATAAATACATAAGGTTTCTCCAG ATTGTAGAAAAGTTATTTCCCACAAAATGCTCATAGGTCTACAAAAAGAA TGAGTTGAAAACTTTTCAAAATCCAATAGTTAGAATATTTGATATGCAGC AGGTTAATCAGAAAATCTTAATAAGAAAAGTCATGAGGGGGTATGGAAAC AAATTATCCTAGTAAAAATTTTCCAAATAATCAAAAAGTGAGAGGAAGAG TCATTTTGTCTGTAAAAAAAGGTGACAAAAGTTTTCTTCAATATTTAAAT TTTTTATCTTTATCATTTTCAGACGGACAGCCAGTCATGGCAACAGGAAG CACTATTGGTCACGTGACTTTCTGGGACTTGGAGAAGAAACGTTTGATCA CTGTCCTGAGACATGCTCATGTAAATTCTGTCAGTGGCATGAAATTTCTT CAAAGACAACCTACAATGATCACCTCAAGTCCTGACAACTCTTTAAAGGT GAAATATAAAATTGATTTTATCAGACATAAATATTGGATTGAAACATAAA GGTACTGCAGGGGCTCTCTGGCACATACTTAGCACTATGCCATATCAAAT TCTTAACAAACCTGATCTGGGAGTTCTGCCCATTGTTTTTAATTACATGG ACAGAATGCACATTAGAGAGGTCAATGAAATTGGGGAAGTTATCGCAGTT TAATGAAAATGTCAGGTTACGTACTAGTTATCGCATGACTTCGAGTGCAA TACGAGATATATTTTACGAGTTCCGAGATTTTTCCGTAATNGCTCTCCTG TAGGGAGGGGTTAAAATACCACATCACATTATAAATGCACGAGTTTTCCT CATTTACATTAGACCATATTTTCTTGTTGTGTTCTACTATTTGCTATATT ACCCAACTTTCATGGAGTGTTGACCAAGAAGTCTGAGGCGCTAGTACCAC TATCCAAGAGTTTCAACTCCTTTCCATGTCACATTCAGTTCATAAGATAG CTGAGCTGTGAAAGCCATTGGAAGTCCTTTATTTCTGGGCTATTCATGTA AAATATATTCTATTTTGCTTAATTTACCAAATATATCTCTTTAGATGTGG ATATTTGATAACCCAGATGGAAGTGCAAGACTGTTGAGANTATATTTTAC GAGTTCCGAGATTTTTCCGTAATATTTTTCCGAGCCTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000474XLOC_000474Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000766-exon-sc0000005-1575043694:158548..158622TCONS_00000766-exon-sc0000005-1575043694:158548..158622Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1575043694:156910..157042TCONS_00000766-exon-sc0000005-1575043694:156910..157042Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1575043694:156538..156592TCONS_00000766-exon-sc0000005-1575043694:156538..156592Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1575043694:156206..156338TCONS_00000766-exon-sc0000005-1575043694:156206..156338Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1575043694:155675..155850TCONS_00000766-exon-sc0000005-1575043694:155675..155850Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1575043694:154982..155078TCONS_00000766-exon-sc0000005-1575043694:154982..155078Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1510915933:158548..158622TCONS_00000766-exon-sc0000005-1510915933:158548..158622Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1510915933:156910..157042TCONS_00000766-exon-sc0000005-1510915933:156910..157042Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1510915933:156538..156592TCONS_00000766-exon-sc0000005-1510915933:156538..156592Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1510915933:156206..156338TCONS_00000766-exon-sc0000005-1510915933:156206..156338Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1510915933:155675..155850TCONS_00000766-exon-sc0000005-1510915933:155675..155850Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1510915933:154982..155078TCONS_00000766-exon-sc0000005-1510915933:154982..155078Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1491911889:158548..158622TCONS_00000766-exon-sc0000005-1491911889:158548..158622Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1491911889:156910..157042TCONS_00000766-exon-sc0000005-1491911889:156910..157042Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1491911889:156538..156592TCONS_00000766-exon-sc0000005-1491911889:156538..156592Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1491911889:156206..156338TCONS_00000766-exon-sc0000005-1491911889:156206..156338Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1491911889:155675..155850TCONS_00000766-exon-sc0000005-1491911889:155675..155850Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1491911889:154982..155078TCONS_00000766-exon-sc0000005-1491911889:154982..155078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:154982..158622 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.7819 11.4832 9.17412 7.98108 8.2414 2.39815 3.15884 11.6766 12.2853 15.2477 14.7298 11.5393 18.3081 20.8979 20.641 21.0565 18.5583 15.9396 3.61841 4.2122 17.5058 15.8121 19.2693 15.0325 5.01221 7.54943 5.77084 5.9613 11.8938 12.7235
Blast
BLAST of TCONS_00000766 vs. Swiss-Prot (Human)
Match: WDR36 (WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.707e-77
Identity = 109/205 (53.17%), Postives = 151/205 (73.66%), Query Frame = 3
Query:    3 GDHVVSIDEDNVINVWSSARADNRETYLNFALDKDVFSITCCIHPSTYLNKILLGSKQGKLQLWNIRTNKMIHEFKGWEEPVVVMEQSPAIDVIGIGLQSGHVILYNIKFEKKLMSFHQDFGNITSIAFRTDGQPVMATGSTIGHVTFWDLEKKRLITVLRHAHVNSVSGMKFLQRQPTMITSSPDNSLKMWIFDNPDGSARLLR 617
            GDH++S+D D ++ +W      + E YL    DK VF I+  +HPSTYLNKILLGS+QG LQLWN+++NK+++ F GW+  V  ++Q+PA+DV+ IGL SG VI++NIKF + LM F QD+G ITSI+FRTDG PVMA GS  GH+  WDLE K+LI  +R+AH  +++G+ FL R+P ++T+  DN+L++WIFD P G  RLLR
Sbjct:  172 GDHIISVDTDGILIIW---HIYSEEEYLQLTFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFPGWKVGVTALQQAPAVDVVAIGLMSGQVIIHNIKFNETLMKFRQDWGPITSISFRTDGHPVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIFDGPTGEGRLLR 373          
The following BLAST results are available for this feature:
BLAST of TCONS_00000766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR362.707e-7753.17WD repeat-containing protein 36 OS=Homo sapiens GN... [more]
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