TCONS_00000766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000766
Unique NameTCONS_00000766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000766 ID=TCONS_00000766|Name=TCONS_00000766|organism=Clytia hemisphaerica|type=transcript|length=669bp
NGGGTGACCATGTTGTCTCTATCGATGAGGACAATGTCATAAATGTGTGG
TCATCAGCAAGAGCTGACAATCGAGAAACATATCTCAACTTTGCTTTGGA
CAAAGATGTCTTCTCTATTACATGTTGCATTCATCCAAGCACATACCTCA
ACAAGATTTTACTTGGTTCAAAACAAGGAAAGTTACAACTATGGAATATC
AGGACCAAcaAGATGATTCACGAATTTAAAGGCTGGGAAGAACCAGTTGT
GGTTATGGAACAGTCTCCAGCTATTGATGTCATCGGGATAGGCCTACAGA
GTGGTCATGTCATCCTTTAtaatatcaaatttgaaaagaaattaatGTCT
TTTCATCAAGACTTTGGCAATATCACCTCAATTGCCTTTAGAACTGACGG
ACAGCCAGTCATGGCAACAGGAAGCACTATTGGTCACGTGACTTTCTGGG
ACTTGGAGAAGAAACGTTTGATCACTGTCCTGAGACATGCTCATGTAAAT
TCTGTCAGTGGCatgaaatttcttcaaagaCAACCTACAATGATCACCTC
AAGTCCTGACAACTCTTTAAAGATGTGGATATTTGATAACCCAGATGGAA
GTGCAAGACTGTTGAGANtatattttacgagttccgagatttttccgtaa
tatttttccgagcctttag
Run BLAST on NCBI

transcript from alignment at sc0000005:154982..158622-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000766 ID=TCONS_00000766|Name=TCONS_00000766|organism=Clytia hemisphaerica|type=transcript|length=3641bp|location=Sequence derived from alignment at sc0000005:154982..158622- (Clytia hemisphaerica)
NGGGTGACCATGTTGTCTCTATCGATGAGGACAATGTCATAAATGTGTGG
TCATCAGCAAGAGCTGACAATCGAGGTTAGTTCTAATGTAACTAGTGCTT
TGAGATTTGATCATTAAAATCATTCTCGAATTCCACACTCTATACAAAGA
TTATCGATTCTGATATTTAAAAACAAAACTTGCATAATTTCGAACTTTCA
TTTTGATGAGTTCTTTCTAGACGAAAAAAAGATAGTAACAAGACTTCTTT
CTGTAGGGANTATTTGCAAGAGACCTACTTGAAAAAGCCTGAGGCTATTA
TTATGTCAGTCAAATAGATGTTTTGGCGAATGCCACAGTCTTTTGAATAA
CTAATTACTCCACATACATTACTTTCCCTCAGCCAATGAAAACATAATAA
ATTATCTTGTCTCTACGACTCTAGATAAACTCCTATGGAGTAATTAGTTA
TTTAAAAGACCGTCACGTTAGCCAAAACAACTAAATCTTTCTATTTTATT
CTTTTAATTTCAGTCAACAAAGCTATTCCTTCGAGATGTTGGTAAGAATA
ACATTCTTATTATTATATCTCACAATAAAGTTTTCCTAAAGGAACATCTT
CAACGTTTGATGTGATATTTTAACTAATTTTACCAGACCATAATGGTCTT
CTCCTTGTGCATTAATTTGAAAAATTTAATTTAAAATTATATTATATATA
TGGCTCTCCTAATGTATCAATTACTCTTTGATAATTAAAGAAAGGAAAAA
TTAACTTTATGTTTGATGCATGCTTTCTTTACCTTAATAATTTATCCATC
TTTTAAGGTGTAACCCTACCAGAAGAAATCACTAAACTGCATTTCTTAAG
ACAAGGTGCCATTTTAGCGGCTGCTGGTTCAAACATTTATATTCTAAAGC
CATACAAACATCATGTTGTAAGTCAAATTTTTTGAATAATTTGTAATTGC
AGAATATCTATGCAGTCCGATTTTTTTAATCAGCATGTCTTTTTTTGAAG
TTTATCTGTTTTGTTTCTAAAATTTAATCGAACATAAATTTTTCAGTTTG
TTCTCTTACTTATTAAATCTTTGATCTTTGGGCCCACTGTCCTATAAATT
CTAACCTTTATACCAGTCATTCATTTGTCCTTCTCAGCTCATTTCGTTAT
TATTACTTTTTGATGCCAGAAATATGCTGGAAATCACAATTTGTCAATTC
ATTAGCAAGCTTATCATTTTCAGCTTGCTGTGTATAGTGAACATAATGCA
GATATACATACGTTAGTCAGCCTGGGTGACCATGTTGTCTCTATCGATGA
GGACAATGTCTTAAATGTGTGGTCATCAGCAAGAGCTGACAATCGAGGTT
AGTTCTAATGTAACTAGTGCTTTGAGATTTGATCATTAAAATCATTCTCG
AATTCCACACTCTATACAAAGATTATCGATTCTGATATTTAAAAACAAAA
CTTGCATAATTTCGAACTTTCATTTTGATGAGTTCTTTCTAGACGAAAAA
AAGATAGTAACAAGACTTCTTTCTGTAGGGAGAACTAACAGTGTTTTATC
ATTCTTTCTTATTTTCTTTTTATAACATAGAAACATATCTCAACTTTGCT
TTGGACAAAGATGTCTTCTCTATTACATGTTGCATTCATCCAAGCACATA
CCTCAACAAGATTTTACTTGGTTCAAAACAAGGAAAGTTACAACTATGGA
ATATCAGGACCAAGTAAGCCTCCTCCTAATGTTGGAGTTGATCTCAGAAG
ATTTTCAATAACAATAAGCGCCTTTTCAATATTCAAGAGTTTGCTTAGAC
TGGCTTAGACTTTAACCTCAGAAGATTTTCAATAAACGCCTTTTCAATAT
TTAAGATTCTACTTAGACTATTGCTAATTTACTTTGATTTTAAATAATGT
CCAGACCACAATTTCTGCTCATCAGTCAATTTATAAATGTAAAATATCAC
ATCATAAAAACGTGTCGTCAGTAGCATGAGTTTTTCATAACTTTTCAGGT
TCTCTTGACAAAAATTTTTCTTTTCTTTAGCAAGATGATTCACGAATTTA
AAGGCTGGGAAGAACCAGTTGTGGTTATGGAACAGGTATGATTTAGAAAT
TTGAAAAATAAACAAATCAAAAAAGGATTTCAACCCTCTACTACAACTTA
TTCATCTTTGAGAATAAACTATTTGGCTTTAACCATATCATAGCTCTTTG
TGTTATTAATCTGATCGTTAGAATTATAAAATCAGATAAAGCAAGAATTG
TTACATAATGATAATGTTGAATATTTTCTTTCAGTCTCCAGCTATTGATG
TCATCGGGATAGGCCTACAGAGTGGTCATGTCATCCTTTATAATATCAAA
TTTGAAAAGAAATTAATGTCTTTTCATCAAGACTTTGGCAATATCACCTC
AATTGCCTTTAGAACTGGTAAGCTTTTGCACCTGTTATGATGTTTTGTAA
ATTTAGATCACTTATCAAATCATTCCCATAAATACATAAGGTTTCTCCAG
ATTGTAGAAAAGTTATTTCCCACAAAATGCTCATAGGTCTACAAAAAGAA
TGAGTTGAAAACTTTTCAAAATCCAATAGTTAGAATATTTGATATGCAGC
AGGTTAATCAGAAAATCTTAATAAGAAAAGTCATGAGGGGGTATGGAAAC
AAATTATCCTAGTAAAAATTTTCCAAATAATCAAAAAGTGAGAGGAAGAG
TCATTTTGTCTGTAAAAAAAGGTGACAAAAGTTTTCTTCAATATTTAAAT
TTTTTATCTTTATCATTTTCAGACGGACAGCCAGTCATGGCAACAGGAAG
CACTATTGGTCACGTGACTTTCTGGGACTTGGAGAAGAAACGTTTGATCA
CTGTCCTGAGACATGCTCATGTAAATTCTGTCAGTGGCATGAAATTTCTT
CAAAGACAACCTACAATGATCACCTCAAGTCCTGACAACTCTTTAAAGGT
GAAATATAAAATTGATTTTATCAGACATAAATATTGGATTGAAACATAAA
GGTACTGCAGGGGCTCTCTGGCACATACTTAGCACTATGCCATATCAAAT
TCTTAACAAACCTGATCTGGGAGTTCTGCCCATTGTTTTTAATTACATGG
ACAGAATGCACATTAGAGAGGTCAATGAAATTGGGGAAGTTATCGCAGTT
TAATGAAAATGTCAGGTTACGTACTAGTTATCGCATGACTTCGAGTGCAA
TACGAGATATATTTTACGAGTTCCGAGATTTTTCCGTAATNGCTCTCCTG
TAGGGAGGGGTTAAAATACCACATCACATTATAAATGCACGAGTTTTCCT
CATTTACATTAGACCATATTTTCTTGTTGTGTTCTACTATTTGCTATATT
ACCCAACTTTCATGGAGTGTTGACCAAGAAGTCTGAGGCGCTAGTACCAC
TATCCAAGAGTTTCAACTCCTTTCCATGTCACATTCAGTTCATAAGATAG
CTGAGCTGTGAAAGCCATTGGAAGTCCTTTATTTCTGGGCTATTCATGTA
AAATATATTCTATTTTGCTTAATTTACCAAATATATCTCTTTAGATGTGG
ATATTTGATAACCCAGATGGAAGTGCAAGACTGTTGAGANTATATTTTAC
GAGTTCCGAGATTTTTCCGTAATATTTTTCCGAGCCTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000474XLOC_000474Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000766-exon-sc0000005-1575043694:158548..158622TCONS_00000766-exon-sc0000005-1575043694:158548..158622Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1575043694:156910..157042TCONS_00000766-exon-sc0000005-1575043694:156910..157042Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1575043694:156538..156592TCONS_00000766-exon-sc0000005-1575043694:156538..156592Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1575043694:156206..156338TCONS_00000766-exon-sc0000005-1575043694:156206..156338Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1575043694:155675..155850TCONS_00000766-exon-sc0000005-1575043694:155675..155850Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1575043694:154982..155078TCONS_00000766-exon-sc0000005-1575043694:154982..155078Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1510915933:158548..158622TCONS_00000766-exon-sc0000005-1510915933:158548..158622Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1510915933:156910..157042TCONS_00000766-exon-sc0000005-1510915933:156910..157042Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1510915933:156538..156592TCONS_00000766-exon-sc0000005-1510915933:156538..156592Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1510915933:156206..156338TCONS_00000766-exon-sc0000005-1510915933:156206..156338Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1510915933:155675..155850TCONS_00000766-exon-sc0000005-1510915933:155675..155850Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1510915933:154982..155078TCONS_00000766-exon-sc0000005-1510915933:154982..155078Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1491911889:158548..158622TCONS_00000766-exon-sc0000005-1491911889:158548..158622Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1491911889:156910..157042TCONS_00000766-exon-sc0000005-1491911889:156910..157042Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1491911889:156538..156592TCONS_00000766-exon-sc0000005-1491911889:156538..156592Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1491911889:156206..156338TCONS_00000766-exon-sc0000005-1491911889:156206..156338Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1491911889:155675..155850TCONS_00000766-exon-sc0000005-1491911889:155675..155850Clytia hemisphaericaexon
TCONS_00000766-exon-sc0000005-1491911889:154982..155078TCONS_00000766-exon-sc0000005-1491911889:154982..155078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:154982..158622 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.7819	11.4832	9.17412	7.98108	8.2414	2.39815	3.15884	11.6766	12.2853	15.2477	14.7298	11.5393	18.3081	20.8979	20.641	21.0565	18.5583	15.9396	3.61841	4.2122	17.5058	15.8121	19.2693	15.0325	5.01221	7.54943	5.77084	5.9613	11.8938	12.7235
Blast
[Close]
BLAST of TCONS_00000766 vs. Swiss-Prot (Human)
Match: WDR36 (WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.707e-77
Identity = 109/205 (53.17%), Postives = 151/205 (73.66%), Query Frame = 3 
Query:    3 GDHVVSIDEDNVINVWSSARADNRETYLNFALDKDVFSITCCIHPSTYLNKILLGSKQGKLQLWNIRTNKMIHEFKGWEEPVVVMEQSPAIDVIGIGLQSGHVILYNIKFEKKLMSFHQDFGNITSIAFRTDGQPVMATGSTIGHVTFWDLEKKRLITVLRHAHVNSVSGMKFLQRQPTMITSSPDNSLKMWIFDNPDGSARLLR 617
            GDH++S+D D ++ +W      + E YL    DK VF I+  +HPSTYLNKILLGS+QG LQLWN+++NK+++ F GW+  V  ++Q+PA+DV+ IGL SG VI++NIKF + LM F QD+G ITSI+FRTDG PVMA GS  GH+  WDLE K+LI  +R+AH  +++G+ FL R+P ++T+  DN+L++WIFD P G  RLLR
Sbjct:  172 GDHIISVDTDGILIIW---HIYSEEEYLQLTFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFPGWKVGVTALQQAPAVDVVAIGLMSGQVIIHNIKFNETLMKFRQDWGPITSISFRTDGHPVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIFDGPTGEGRLLR 373
The following BLAST results are available for this feature:
BLAST of TCONS_00000766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR362.707e-7753.17WD repeat-containing protein 36 OS=Homo sapiens GN... [more]
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