TCONS_00000757 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000757
Unique NameTCONS_00000757
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1979

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000757 ID=TCONS_00000757|Name=TCONS_00000757|organism=Clytia hemisphaerica|type=transcript|length=1979bp
CTTATTTATTGGTTGATGCGTAACAATTACCCTATTGTTTAATAATTTAT
GCGGTATTTTTTTCTTACGCTTGTATCATATGATCTTAATTATGTTCGAA
AGACCTCTCCGGGGAGAGTGAAATCCTCATTTTTGGAAACCTTAATTTGT
ACATATCAGCACTCCATCGCATACATGTTTTTCGTGTGTTGTTGTCTAGA
GAAAGTTTATTGATTGGAGAGTCATAAAGATATTCTTATCAAAGAAGACC
GATGTCATACTCTGAAACCCCATGTTGCGAGGGGTTGTGTATATATACAT
CGTTGAAAACTAATTGAAACttcatttgaaataaaataattgTGACCCAA
GTTGTGAAGAAGAAGTTTTGCCAGTGCTATTGTTTGCATACGAAGCTCAA
TGCATTGAGAATCAGGaCGAGAGAGATGTTACATCAAAGACTATTATTAC
TGTTATCACTAGCCGTTTACGTTAGCGCGGATGCGGAGCCGGCCCAACGT
ATCTACACGCGTAACGATGGTCCAAAATGGATGCCTTTTGAGTGTGACTC
TGGTTACGACTGCCCGTTGATGCAGCGCCGTAAACGTAAAAGCCATTCTG
AAATCTGTATTTTGAGTTCACCTAATTGGTACAAATTTCGATGGGAAAGT
AAGGCTGAAAAGTTTGATCGATTCAAAGCTGAAAGTGTTTCTGCTCCTCT
TTCCAGAGCTTTccaacaaaaaaatttcttggaaGTTCTCTATCTCAATA
ACCGAAAGAAATTGATCGAGAAAGGCAATGAAAAAGGTTTGGCTTATATC
ACTCATGTGAAATTCGATCAACTTCAAAGAAAATATATCATTCACCTTTA
TCTGATGATTCCCAAACTTGCTGAAGGTGACTTCAGAGTTCCATGCTCTC
GTCTTCTTCCTCATAAAATGGGTCAAAAAATCATTGGTCCCATTATGAAA
CTCCTTGGTGCCGAAAATTGTCCTGAATTTCTAGGCAGATTTCAAGCCAG
TAAAGTACGAGCGGCTCCAAGATGTTTCTACGCGGTTGATAAGAGTCAAG
ATTCAGTGAAACTTCAAAAAGAGATGGGTTGGGATCAAAATGAATTTGTT
GCAACTGGATTCAAGTCTGGGGAATTGAATGAACATGAATGGCACTTGGC
ACCAAATAATTTGTACACAGAATACGATAATGACGAGTAAAGCAAAAATA
TGGAAACATTTGTATGTAAAAAGATTGGAGAAAAATATCCTCAGTTGGCG
AGAATGTCAAAATATCGCCTCTTTGAGTGTTGAAGCAATATTCTTGGGTG
AAAGAAACACCTAAAATGCGAATCTAGACTCGCTTCGCTAAAACCAGTGA
CTATAGTATGATGGTTATGGTAAGGCAACTGATAAATACTGGACATAACA
GATGTTTTATAAACTTCTTAACATGGACCAAAGACATTGTATATAAGGGT
GTGGTGGGTTGTAGTTGACCTGAATTGTaaatagtttttttataagtttt
atgATTATAATATTCTTTCCAGAGTTGCAGACTATCGGAAATAATGAACA
TGCCCTGATTTCTGGCCCCACACCAGATATTTTAAGAGGGTGTAACTATG
CtggtagaaaaaaattaattttgacccTCTGATAGTTCTatttcggactg
attttactCAGAAATTAGCCTTTTCATTTTAAGAAATCATATTTTTGGAT
TGTGCTAACTCATAAAGTGTCATTAAATGACACACGATTTGAAAAGCTGA
GTATCAGCTGGTCAGATACTCCAAGCTGGATTTTCAAGCAAAagataaca
aaaaaaattacttgatattttaagaataattttttgCTAATTTATTTGCT
TACTGAGTTTTTTAGAGTTTGAATGAAGTCCACGGGTAACCTGGAACCTA
TTGTATAtagttttaaaagtaattttgagGTTTTAACCAGAAATAATATT
TGATAATTAATTCCATCTTGCATCAAGAT
Run BLAST on NCBI

protein sequence of TCONS_00000757-protein

>TCONS_00000757-protein ID=TCONS_00000757-protein|Name=TCONS_00000757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MLHQRLLLLLSLAVYVSADAEPAQRIYTRNDGPKWMPFECDSGYDCPLMQ
RRKRKSHSEICILSSPNWYKFRWESKAEKFDRFKAESVSAPLSRAFQQKN
FLEVLYLNNRKKLIEKGNEKGLAYITHVKFDQLQRKYIIHLYLMIPKLAE
GDFRVPCSRLLPHKMGQKIIGPIMKLLGAENCPEFLGRFQASKVRAAPRC
FYAVDKSQDSVKLQKEMGWDQNEFVATGFKSGELNEHEWHLAPNNLYTEY
DNDE
Run BLAST on NCBI

transcript from alignment at sc0000005:36697..40201-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000757 ID=TCONS_00000757|Name=TCONS_00000757|organism=Clytia hemisphaerica|type=transcript|length=3505bp|location=Sequence derived from alignment at sc0000005:36697..40201- (Clytia hemisphaerica)
CTTATTTATTGGTTGATGCGTAACAATTACCCTATTGTTTAATAATTTAT
GCGGTATTTTTTTCTTACGCTTGTATCATATGATCTTAATTATGTTCGAA
AGACCTCTCCGGGGAGAGTGAAATCCTCATTTTTGGAAACCTTAATTTGT
ACATATCAGCACTCCATCGCATACATGTTTTTCGTGTGTTGTTGTCTAGA
GAAAGTTTATTGATTGGAGAGTCATAAAGATATTCTTATCAAAGAAGACC
GATGTCATACTCTGAAACCCCATGTTGCGAGGGGTTGTGTATATATACAT
CGTTGAAAACTAATTGAAACTTCATTTGAAATAAAATAATTGTGACCCAA
GTTGTGAAGAAGAAGTTTTGCCAGTGCTATTGTTTGCATACGAAGCTCAA
TGCATTGAGAATCAGGGTAAGAATTTTTTCTATAATTTTAGAATGTTTTG
TCATATTTCGGCGGTTGGAACGCTGTGTCGAGTAAGATTTTTTTTAAGAG
AAGTGATTTTAGTAAATAAGTATAAGACTTCTAATTTAGTTGATCAAGCA
GGGAAAATACACAAATTTAAATTTTGGCGAGACTAATTTTAGCGCAACAT
TTGAAAAACTAAATTCACAGAGATTTTCACCAGTTTTCGACCAGTTTTTC
TTTTAAAGTATGTTTAGTAATTTACAAAGCATACTAAAAAATTTGAAAAA
AATAGTTTTTAACATCTAGATAATGAACTTCCCATCAAAGTTGATTTAAA
ATAATCAAAGAAAAATCCTTGACAGAATTTTACACTTTTTTGACATCTAT
CTACACTTTTTAAAACCACTGAATAACATTATGGGTTAAAACACAAAAGC
CTCGACTGGTATCCGCCTGTGCATCCGTTGTTGACTTGATAGTGGTTAAA
ATCAGATGTCAGTTTTCCTTTTTCGCTTTTTGTCCCATTTTTCATATTAG
ATAATCTGAATTTTGTTGAGTAAAACATTTGTCTGGAATGTGTGTTAGAT
CTTGTTCTAGATATTAAGAAAAGAGGAAAATTCGGAAATTTCCCCCGTTT
CTCTGGAAGATATAAACGAGTGGCAACAAGGGTTCATACTACTTTTCTAG
ATTCAATAAATAGTTAACCCAATACATATTAAGGAGGTTGATCACTGGAT
AGAAACCAAAGAGAAGTCAGATGTTTTCAAGGAATGCGTTTAAAAATCTA
AGTGACCTCTTAAAAAAAGTTTAAGATACAGGTCTACAATCGGTGCCGAA
ATATTTGGCACAAAAGGGAAAATCTCTCGAAACTTTAAAACCGCAAAGGA
ATTTTAGATGCTTTAAAGTACGGTTTAAAAGTAGAATTTTAACTCTGAGT
TTTAACATTAGATTTAAGGCTCTCAGGATCTAAAAGCTAAAAATTTTTCG
AATAAGGCTGAGAATATAGCCTGGAAGCCAATTAACCCCTACCAAATCGA
AAAAACAAAGGGGAAGTACTAAAACTGCAATTCCAGCCCGATCTTTAAAT
TCTGAAAAACGTTAAAATACCCAAAATTGCCAATATATTTCGGCGCCGAT
TGTAGCGCAAGCTTTAAATGAATGACCTCCCTTAATAAATGTCACAACAG
TATCGTTATGTAAAATGTCACAGGGGTCGTTGGGAGATTATCAAGATCTA
AATTGGCAGTGATTTCCTCTAAAAATAAGATTTAGCGGTTATTGCACTGC
GGGGTATCAATTGAGTTACTTTCTATCTTTCTGCACATGTGACTTAAATT
TTTATTCACTACCGGACATCCTAGCAGTGAGTTTTAACCACAGGATATAT
TTAGATTCTATTTTCTCAGATTTCACAATTTCAAAAATACTGAATTTAAG
TTTTGCTGATCGTTGCTTTTATCAAATTTATTTCAGACATTTTGTCTTGA
TGTTGCTGGTTGTATCGAATAATCTTTTTTTCTATATTTTAGACGAGAGA
GATGTTACATCAAAGACTATTATTACTGTTATCACTAGCCGTTTACGTTA
GCGCGGATGCGGAGCCGGCCCAACGTATCTACACGCGTAACGATGGTCCA
AAATGGATGCCTTTTGAGTGTGACTCTGGTTACGACTGCCCGTTGATGCA
GCGCCGTAAACGTAAAAGCCATTCTGAAATCTGTATTTTGAGTTCACCTA
ATTGGTACAAATTTCGATGGGAAAGTAAGGCTGAAAAGTTTGATCGATTC
AAAGCTGAAAGTGTTTCTGCTCCTCTTTCCAGAGCTTTCCAACAAAAAAA
TTTCTTGGAAGTTCTCTATCTCAATAACCGAAAGAAATTGATCGAGAAAG
GCAATGAAAAAGGTTTGGCTTATATCACTCATGTGAAATTCGATCAACTT
CAAAGAAAATATATCATTCACCTTTATCTGATGATTCCCAAACTTGCTGA
AGGTGACTTCAGAGTTCCATGCTCTCGTCTTCTTCCTCATAAAATGGGTC
AAAAAATCATTGGTCCCATTATGAAACTCCTTGGTGCCGAAAATTGTCCT
GAATTTCTAGGCAGATTTCAAGCCAGTAAAGTACGAGCGGCTCCAAGATG
TTTCTACGCGGTTGATAAGAGTCAAGATTCAGTGAAACTTCAAAAAGAGA
TGGGTTGGGATCAAAATGAATTTGTTGCAACTGGATTCAAGTCTGGGGAA
TTGAATGAACATGAATGGCACTTGGCACCAAATAATTTGTACACAGAATA
CGATAATGACGAGTAAAGCAAAAATATGGAAACATTTGTATGTAAAAAGA
TTGGAGAAAAATATCCTCAGTTGGCGAGAATGTCAAAATATCGCCTCTTT
GAGTGTTGAAGCAATATTCTTGGGTGAAAGAAACACCTAAAATGCGAATC
TAGACTCGCTTCGCTAAAACCAGTGACTATAGTATGATGGTTATGGTAAG
GCAACTGATAAATACTGGACATAACAGATGTTTTATAAACTTCTTAACAT
GGACCAAAGACATTGTATATAAGGGTGTGGTGGGTTGTAGTTGACCTGAA
TTGTAAATAGTTTTTTTATAAGTTTTATGATTATAATATTCTTTCCAGAG
TTGCAGACTATCGGAAATAATGAACATGCCCTGATTTCTGGCCCCACACC
AGATATTTTAAGAGGGTGTAACTATGCTGGTAGAAAAAAATTAATTTTGA
CCCTCTGATAGTTCTATTTCGGACTGATTTTACTCAGAAATTAGCCTTTT
CATTTTAAGAAATCATATTTTTGGATTGTGCTAACTCATAAAGTGTCATT
AAATGACACACGATTTGAAAAGCTGAGTATCAGCTGGTCAGATACTCCAA
GCTGGATTTTCAAGCAAAAGATAACAAAAAAAATTACTTGATATTTTAAG
AATAATTTTTTGCTAATTTATTTGCTTACTGAGTTTTTTAGAGTTTGAAT
GAAGTCCACGGGTAACCTGGAACCTATTGTATATAGTTTTAAAAGTAATT
TTGAGGTTTTAACCAGAAATAATATTTGATAATTAATTCCATCTTGCATC
AAGAT

Coding sequence (CDS) from alignment at sc0000005:36697..40201-

>TCONS_00000757 ID=TCONS_00000757|Name=TCONS_00000757|organism=Clytia hemisphaerica|type=CDS|length=765bp|location=Sequence derived from alignment at sc0000005:36697..40201- (Clytia hemisphaerica)
ATGTTACATCAAAGACTATTATTACTGTTATCACTAGCCGTTTACGTTAG
CGCGGATGCGGAGCCGGCCCAACGTATCTACACGCGTAACGATGGTCCAA
AATGGATGCCTTTTGAGTGTGACTCTGGTTACGACTGCCCGTTGATGCAG
CGCCGTAAACGTAAAAGCCATTCTGAAATCTGTATTTTGAGTTCACCTAA
TTGGTACAAATTTCGATGGGAAAGTAAGGCTGAAAAGTTTGATCGATTCA
AAGCTGAAAGTGTTTCTGCTCCTCTTTCCAGAGCTTTCCAACAAAAAAAT
TTCTTGGAAGTTCTCTATCTCAATAACCGAAAGAAATTGATCGAGAAAGG
CAATGAAAAAGGTTTGGCTTATATCACTCATGTGAAATTCGATCAACTTC
AAAGAAAATATATCATTCACCTTTATCTGATGATTCCCAAACTTGCTGAA
GGTGACTTCAGAGTTCCATGCTCTCGTCTTCTTCCTCATAAAATGGGTCA
AAAAATCATTGGTCCCATTATGAAACTCCTTGGTGCCGAAAATTGTCCTG
AATTTCTAGGCAGATTTCAAGCCAGTAAAGTACGAGCGGCTCCAAGATGT
TTCTACGCGGTTGATAAGAGTCAAGATTCAGTGAAACTTCAAAAAGAGAT
GGGTTGGGATCAAAATGAATTTGTTGCAACTGGATTCAAGTCTGGGGAAT
TGAATGAACATGAATGGCACTTGGCACCAAATAATTTGTACACAGAATAC
GATAATGACGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000470XLOC_000470Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000757-proteinTCONS_00000757-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000757-exon-sc0000005-1575043694:39786..40201TCONS_00000757-exon-sc0000005-1575043694:39786..40201Clytia hemisphaericaexon
TCONS_00000757-exon-sc0000005-1575043694:36697..38259TCONS_00000757-exon-sc0000005-1575043694:36697..38259Clytia hemisphaericaexon
TCONS_00000757-exon-sc0000005-1510915933:39786..40201TCONS_00000757-exon-sc0000005-1510915933:39786..40201Clytia hemisphaericaexon
TCONS_00000757-exon-sc0000005-1510915933:36697..38259TCONS_00000757-exon-sc0000005-1510915933:36697..38259Clytia hemisphaericaexon
TCONS_00000757-exon-sc0000005-1491911889:39786..40201TCONS_00000757-exon-sc0000005-1491911889:39786..40201Clytia hemisphaericaexon
TCONS_00000757-exon-sc0000005-1491911889:36697..38259TCONS_00000757-exon-sc0000005-1491911889:36697..38259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:36697..40201 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.56123	0.566833	0.158863	0.266439	0.459516	0.598073	0.154618	0.193002	1.89175	0.439357	1.34027	2.3628	60.1476	60.1658	77.5884	68.7171	4.45388	5.08945	49.049	33.8236	5.9883	7.0328	15.7197	17.3002	38.6504	28.1949	10.3615	3.43183	0.333708	0.203997
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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