TCONS_00000718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000718
Unique NameTCONS_00000718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000718 ID=TCONS_00000718|Name=TCONS_00000718|organism=Clytia hemisphaerica|type=transcript|length=3656bp
GAAGATCCCAAAATCTGGTAAGCATTGTCGAGAATAACACAATCTTCAAA
GATAAGTTTAATCATGGAGCAAATCACAGTGCCGTTATAGAACTGATAGA
ATCAGATTTGAACCAAGTAGTAATTACATATGGTTATTGCAATGAAGATA
TCGCTGGATTCTTTCTCATATTCTCTCCTTTGCCTGGTGCAAACGAATCC
AGTTGTGTTTTGCTGTCGATAGTGAATAATATTGATAATGGTTTGTACCT
ACCATATATATCAAAATCGCCAAAGAAGAAGATTGTTGTTTTATTGCAGT
CAGATTTCCTTCAAATACTCTTATTAGAATTGGATCGGCTTCTACTACAA
GGATTAAAATTATATNTCTTCAATTACTCTTATTAGAATTGGATCGGCTT
CTACTACAAGGATTAAAATTATATTTAGTTGGACTAACCAGACAAGAACT
ATTGAGATACAGAAaagattttcctttctttaCGTTGGTGCCGTACTCAA
ATGAAGAATTGACTGACAATAACAACAGTTTATTAGCAACATTCTCCAAT
TTTACTGAATTTCAGTTTAAAAGAACTTCAGTTATGGATTCCTTGGAAAG
ACATGCCAACATATATCAGAATGATAATACTGGATCTTTTGAACGTGCTG
TGAGAGTAGTTACAGCATTTTATCCACCTTTTGTCAAACAAGTTTCTCCA
GACATATCTAATGTGACAGGTGATTACAAATGTGGGCAAGCAAAACTCTG
TGAGGTACCAAAGAAGAATCAAAACGGTACAGTAACATGGACAGTGAGCT
GCTGTACTGGGTACATTGTCGATAGTTTTGAAATGGtgcaaagaaaatta
aattttgagtaTACTCTTTATATTGTTGAAGATGGAAAATGGGGCACTTT
GGAAAACGAAACTTGGAATGGAATGATTGGTGATCTTGTTGATAAGAAAG
CTGACCTTATTATCAATATCATGACACCTTTAGAAATACGAGCTAAAGAT
ATACATTTTACTCACCATTTTATGGAGTCAAATTTCGGAATCGTTAGAGT
CAAAGAATACAATAGTGATATTCCAAGCTTTGATTTTCTGAAGCCTGTTG
GTGGGAACTTACATTTTGCAATATTAGCTTCGACTATCTTGACTCTATTG
ACGATTTCATTTCTAGAAaattactttttgaaatttacaaaaaaacaagG
AGTTTTCTTTCAAGAAACTATGGCTTATGTCTTTGGATTAACATTCCAAA
GAGATATGGGTGGTACAAATCCTCGAATGTGGTCAGGGCGTCTAACTGCT
CTTGGTTATGCATCTGCAATGACCATCATTATGTCCGTCTATACTGCCAG
AATCACTGCTAACTCTATTGGGCAGGTCGTTATGGATGATTTCAAAGGTT
TCAAAGACAAAAAGTTTCAAAACCCATCTGAAGATTACAAATTTACTTTG
GTTGGAGGTCAAGGTTGGGCCATAGAGAGTTTCTTCAGAGATCATCCAGA
TGAAAGCTTTCAAAGAATGTACAAATTCATGtctaagtattttgtgaaaA
CAGAAATTGAAGGAGTGAAAAAGCTTTTGGATGGCACCATCCAAGCCTAT
ATAGCTGATAGTGGTTCATTTCCAGTCGTTCTACAGCGAATCACTTCTGA
ATTAGGCTGTCCTAAAGAAATTGAGCTTTTAGAAGAAAGCTTTATCGGAA
CACATGGACTTTCCTTTGCATATCGTAAAAACTTCCCTTATGGAAAAACA
ATATCAAATACTTTGCTTGGTCTTTACCAGACAGGCGCCTTGATTCGATT
GAGAAAGAAATGGTTCCCAAGCTCTCATTGCAAAGGAAAAACACCAGTAC
AGCAATTTGATTGGACTTATTTTTCCGGTATTCTGGTCATCGTTGGCTAT
ACTGTTATAATTGGAATATTTGTCAACCTTATTGAACATTTTTACATGTT
TCTCAGAAAAATGTACAAATCAAAGTCTGCTGATCTTACAGAACAGAAGA
GGTCCACAAAGTACACCGAAACAAacatttgaatattttgaaaatatatg
tTAAATAAAAATGAGTGTTAAATAACAAATGTTACATGGATGAGATTCGG
TGTTTTTTTGTTAGCTAGGTCGATCTAAGTTTTTCTGCAATCCACataga
ataaaaatgaaaaaccaaatcaaaatgaaaatttttgtcagaaTAAAATG
GAAGCTTACAAGAGTACGTGACTATAAGTTTGTTGAGTTTTGCTATATAT
AACatacaaaataattttatcaaTGTTTGCAAATCAGAATAATCAAAATC
GAAAGTTTGGCTGATGGTATTGTGGGGTGTTTTTTGGAGTCTGGGtgaaa
ttatattttatattcctatctaaaatattccaaaaaatagctagaatata
atttttttatatcaaaaaGCTACTTTCCAGAGACCATCGACTGTATTAAT
GtatgtaaaatatattttttctacgTTTATCTACACAAGCAtctaaattt
tctgaaaatcaaattttaaattaaaatcaaCATCATTGACAGGGTATTGT
CTTGCGAACACACAAAGAAAAACCATTGATTTCGGTTTCGATATTCCTGT
ACACGACAAACCATTTGATACTTTCTTCAAATTGAAAAGTGAAGTAAAGG
TTAAGGTAATGTTGTATGTCTCTGTTAAAGATATATTTACCACTTCGAAT
GCAATAGACACAGGATGTCTTTTCATATCTCCCGCATCTGATATTTGCTC
TATGGTGTATATTTTACGGACCAGTAATCCAAGACCTTTAGAATCATACT
CATAGACTGCTTCATCGATATTATCTTTACCAAATATTTCATAGATCTGT
GACGTTCTTAGTGAAGAGAGATCATCAAAAGCTAATTGATTGGTGGCTTG
TTTTGATGATTCCATATTACAAACACAAAAGCGAAATTGTTTTGGTGCGT
CACTACACTCTCGATATTTACCAAAGGTTGATATACGATCGTATGATAAT
AGTTTCCCTTCATAGGTTTTCAAATGTTCAGCATTTTTATAACTAATTTC
AGTACTAATCCTGTCTNTGTTTTCAAGTGTTCAGCATTTTTATAACTAAT
TTCAGTACTAATCCTCTCTTCTGTATTCTTGGACCCTTTCCCAGGAGATG
ATGTTATATCAAACGTTAAAATAACACTTTCAGTTGTTTTTCGTTGCATT
ACGTTTTTAAAACTTGTTGGAACCATTCGTTTACATTGTCCTTCCAATGA
TACAGAACTAATCAAATTGTTCACTTTCCCAAGAGCAAATTCGACAAACG
ACATTAGTTCTGTTGTGTTTTCGATTGGCGAGTCCCAACCCTGGCAAACA
CACAAATTTGGCATTGCCATTTCAATATCATTACACGTACGATTGGCTGG
TACCAAATCTAAAAGCCCTTTCCTAAGGTGATCTTTCGAAATGAGTCTTT
TAACCGTATGATGAACATCGATTAAGTTAACTAATCTGTACTGATTCGCT
TTCAAATTCTGGATTCCTCTTTTTCCAATAAGCTGTTGAACTTGCTCAGG
TATCACCATGAACAATGTTGGATGGAATTGCTCATAACGACCATCTAATT
CCTGGAAAACATAACTGGTATATGTATTACCATGGTCACTGAAAAATATA
GTCAGT
Run BLAST on NCBI

protein sequence of TCONS_00000718-protein

>TCONS_00000718-protein ID=TCONS_00000718-protein|Name=TCONS_00000718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp
MDSLERHANIYQNDNTGSFERAVRVVTAFYPPFVKQVSPDISNVTGDYKC
GQAKLCEVPKKNQNGTVTWTVSCCTGYIVDSFEMVQRKLNFEYTLYIVED
GKWGTLENETWNGMIGDLVDKKADLIINIMTPLEIRAKDIHFTHHFMESN
FGIVRVKEYNSDIPSFDFLKPVGGNLHFAILASTILTLLTISFLENYFLK
FTKKQGVFFQETMAYVFGLTFQRDMGGTNPRMWSGRLTALGYASAMTIIM
SVYTARITANSIGQVVMDDFKGFKDKKFQNPSEDYKFTLVGGQGWAIESF
FRDHPDESFQRMYKFMSKYFVKTEIEGVKKLLDGTIQAYIADSGSFPVVL
QRITSELGCPKEIELLEESFIGTHGLSFAYRKNFPYGKTISNTLLGLYQT
GALIRLRKKWFPSSHCKGKTPVQQFDWTYFSGILVIVGYTVIIGIFVNLI
EHFYMFLRKMYKSKSADLTEQKRSTKYTETNI
Run BLAST on NCBI

transcript from alignment at sc0000005:878205..883750+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000718 ID=TCONS_00000718|Name=TCONS_00000718|organism=Clytia hemisphaerica|type=transcript|length=5546bp|location=Sequence derived from alignment at sc0000005:878205..883750+ (Clytia hemisphaerica)
GAAGATCCCAAAATCTGGTAAGCATTGTCGAGAATAACACAATCTTCAAA
GATAAGGTAAATTTTTACATTCTTAAtgctctttatttttttttttggca
aaggTTGATTTTGCAGGATTTGAATTTCTTGGTTGAGAACATCCGCAAAA
TCTTAAAAGGGGTTTAATTTAATTATTCATTCATAGagttatatttcaca
ggtctatcgacctctacgaaataattttagatttataaaatattgtctaa
ttcttcatctcgtccagtcgtcagaagatatggacagagaagacgttgtt
tcggtctttgtcctaggttttctaactaggcgaaggtttgttctagggct
tcctcttacatgccaagcgaaatcatcatttttttaattcatttttttcg
ccttttggcacatatctttaataatttttctttcgttgatggtgaagtcg
tctgtaatgctaaagccaccaatttcGTTGAATCGTTTGtcagcttatgc
agattttacATTATTCGATCTTTTTCCTCcatactttttaagatcaactt
gatcAACTTAAAAAGtagtgttttgaattttttggacattttttggacat
tttttcgAGAAAACCCTCTCtagattttgttttctttttccccTTCAAGT
AGCTTAAAATCGCTTTTTCTCAACATTGTTATTTTACGTGACAtgaattt
tctatattttcagTTTAATCATGGAGCAAATCACAGTGCCGTTATAGAAC
TGATAGAATCAGATTTGAACCAAGTAGTAATTACATATGGTTATTGCAAT
GAAGATATCGCTGGATTCTTTCTCATATTCTCTCCTTTGCCTGGTGCAAA
CGAATCCAGTTGTGTTTTGCTGTCGATAGTGAATAATATTGATAATGGTT
TGTACCTACCATATATATCAAAATCGCCAAAGAAGAAGATTGTTGTTTTA
TTGCAGTCAGATTTCCTTCAAATACTCTTATTAGAATTGGATCGGCTTCT
ACTACAAGGATTAAAATTATATNTCTTCAATTACTCTTATTAGAATTGGA
TCGGCTTCTACTACAAGGATTAAAATTATATTTAGTTGGACTAACCAGAC
AAGAACTATTGAGATACAGAAaagattttcctttctttaCGTTGGTGCCG
TACTCAAATGAAGAATTGACTGACAATAACAACAGTTTATTAGCAACATT
CTCCAATTTTACTGAATTTCAGTTTAAAAGGTGAAATACTTTTTGTTCCT
GTTAACGTATTCCATTTCACTCGCAttgtttttaaaactaaaatttttcc
CATCGATCAACTGCAActttaaaaatgtaaatttgTGATTGAATTGAATC
GACACGAATTTTCACACCGTTATGGAAAGCTCAGCTTTCCGAAACACGGT
AGACATTCTCGCAGAAAATAGGAGTGAAATTACCTATTTCATATACCttt
ctgatatttttcttaGCCACTGTTTGCGAATTTTTGAAGATGATATAAAT
CACCAGCCGAAGAAgctttcaacctttttttattAAACTAAGGCAGGTCT
CCAGAACTTTAAGGTCTTTTTTAGACTGACATATCCATTTCACTTTAGAA
CTTCAGTTATGGATTCCTTGGAAAGACATGCCAACATATATCAGAATGAT
AATACTGGATCTTTTGAACGTGCTGTGAGAGTAGTTACAGCATTTTATCC
ACCTTTTGTCAAACAAGTTTCTCCAGACATATCTAATGTGACAGGTGATT
ACAAATGTGGGCAAGCAAAACTCTGTGAGGTACCAAAGAAGAATCAAAAC
GGTACAGTAACATGGACAGTGAGCTGCTGTACTGGGTACATTGTCGATAG
TTTTGAAATGGtgcaaagaaaattaaattttgagtaTACTCTTTATATTG
TTGAAGATGGAAAATGGGGCACTTTGGAAAACGAAACTTGGAATGGAATG
ATTGGTGATCTTGTTGATAAGAAAGCTGACCTTATTATCAATATCATGAC
ACCTTTAGAAATACGAGCTAAAGATATACATTTTACTCACCATTTTATGG
AGTCAAATTTCGGAATCGTTAGAGTCAAAGAATACAATAGTGATATTCCA
AGCTTTGATTTTCTGAAGCCTGTTGGTGGGAACTTACATTTTGCAATATT
AGCTTCGACTATCTTGACTCTATTGACGATTTCATTTCTAGAAaattact
ttttgaaatttacaaaaaaacaagGAGTTTTCTTTCAAGAAACTATGGCT
TATGTCTTTGGATTAACATTCCAAAGAGATATGGGTGGTACAAATCCTCG
AATGTGGTCAGGGCGTCTAACTGCTCTTGGTTATGCATCTGCAATGACCA
TCATTATGTCCGTCTATACTGCCAGAATCACTGCTAACTCTATTGGGCAG
GTCGTTATGGATGATTTCAAAGGTTTCAAAGACAAAAAGGTTGGTATATC
TTTTATTCCTAATAGATCCAGCCACGCCCAAGACTAATTTTGTTTCTATA
ATTGTTTCTGTCAAAACTTTCTAAAATCGAGTATATAGTACCATGAActg
attttctattttaaatgtCGATTTAGCTCAATTTTCCTAGACAAACTCTG
TTTTTCAATCCAAGTGGCAATTATTACCCCAGTTGAACTTTATAATCCTT
TTTGGATCCTTCCTTTCCAGCTTTGGAGAATTCTCTTAATTTTGAAACAC
TTTTTATCAAAGTGATAAAATAGGGGTATTCTCTATTTTAGTTTCAAAAC
CCATCTGAAGATTACAAATTTACTTTGGTTGGAGGTCAAGGTTGGGCCAT
AGAGAGTTTCTTCAGAGATCATCCAGATGAAAGCTTTCAAAGAATGTACA
AATTCATGtctaagtattttgtgaaaACAGAAATTGAAGGAGTGAAAAAG
CTTTTGGATGGGTAAGCAACAAGTGTACAAAAATACACGTATTAATCCTA
ACACTTCAAGAGCTTGAGTTTACATGGTTACTGTGGTTGAATGACATTCG
GggtgggtacttaggcaaaaatgggtgctgcaGACCTGTCTGAAcgactg
aatgatagaaaggtacccaattgtaaaatttcaaattaatcaagtaaagc
agggccgaatttggaggttcttggatcactcgttgaccaaaaatggtgaa
aaaactGTCCCGTTCggacatacccctcatccgccaaccctagtaccccc
tcccccaggaaaaacgtcaaaatatattaaaaatttgACGTAACTCAACA
CTGGTAAACTAGAACCCAGTACTTTTGATGCCGCTTTAAATGCAAGAGAG
TTTGGGTTTATACCGAATGTTTTATAGacaaaaaaagaagtttttgcGAA
GGAATTCTctggagagagctttttttcttgaaatgcGTGATTACTGTGAT
TCGTACCTGTTACATCTAACTTCGTTTTAATTGAAAGGAAATAAtgataa
cttttattttattcttctttGCAGCACCATCCAAGCCTATATAGCTGATA
GTGGTTCATTTCCAGTCGTTCTACAGCGAATCACTTCTGAATTAGGCTGT
CCTAAAGAAATTGAGCTTTTAGAAGAAAGCTTTATCGGAACACATGGACT
TTCCTTTGCATATCGTAAAAACTTCCCTTATGGAAAAACAATATCAAATA
CTTTGCTTGGTCTTTACCAGACAGGCGCCTTGATTCGATTGAGAAAGAAA
TGGTTCCCAAGCTCTCATTGCAAAGGAAAAACACCAGTACAGCAATTTGA
TTGGACTTATTTTTCCGGTATTCTGGTCATCGTTGGCTATACTGTTATAA
TTGGAATATTTGTCAACCTTATTGAACATTTTTACATGTTTCTCAGAAAA
ATGTACAAATCAAAGTCTGCTGATCTTACAGAACAGAAGAGGTCCACAAA
GTACACCGAAACAAacatttgaatattttgaaaatatatgtTAAATAAAA
ATGAGTGTTAAATAACAAATGTTACATGGATGAGATTCGGTGTTTTTTTG
TTAGCTAGGTCGATCTAAGTTTTTCTGCAATCCACatagaataaaaatga
aaaaccaaatcaaaatgaaaatttttgtcagaaTAAAATGGAAGCTTACA
AGAGTACGTGACTATAAGTTTGTTGAGTTTTGCTATATATAACatacaaa
ataattttatcaaTGTTTGCAAATCAGAATAATCAAAATCGAAAGTTTGG
CTGATGGTATTGTGGGGTGTTTTTTGGAGTCTGGGtgaaattatatttta
tattcctatctaaaatattccaaaaaatagctagaatataatttttttat
atcaaaaaGCTACTTTCCAGAGACCATCGACTGTATTAATGtatgtaaaa
tatattttttctacgTTTATCTACACAAGCAtctaaattttctgaaaatc
aaattttaaattaaaatcaaCATCATTGACAGGGTATTGTCTTGCGAACA
CACAAAGAAAAACCATTGATTTCGGTTTCGATATTCCTGTACACGACAAA
CCATTTGATACTTTCTTCAAATTGAAAAGTGAAGTAAAGGTTAAGGTAAT
GTTGTATGTCTCTGTTAAAGATATATTTACCACTTCGAATGCAATAGACA
CAGGATGTCTTTTCATATCTCCCGCATCTGATATTTGCTCTATGGTGTAT
ATTTTACGGACCAGTAATCCAAGACCTTTAGAATCATACTCATAGACTGC
TTCATCGATATTATCTTTACCAAATATTTCATAGATCTGTGACGTTCTTA
GTGAAGAGAGATCATCAAAAGCTAATTGATTGGTGGCTTGTTTTGATGAT
TCCATATTACAAACACAAAAGCGAAATTGTTTTGGTGCGTCACTACACTC
TCGATATTTACCAAAGGTTGATATACGATCGTATGATAATAGTTTCCCTT
CATAGGTTTTCAAATGTTCAGCATTTTTATAACTAATTTCAGTACTAATC
CTGTCTNTGTTTTCAAGTGTTCAGCATTTTTATAACTAATTTCAGTACTA
ATCCTCTCTTCTGTATTCTTGGACCCTTTCCCAGGAGATGATGTTATATC
AAACGTTAAAATAACACTTTCAGTTGTTTTTCGTTGCATTACGTTTTTAA
AACTTGTTGGAACCATTCGTTTACATTGTCCTTCCAATGATACAGAACTA
ATCAAATTGTTCACTTTCCCAAGAGCAAATTCGACAAACGACATTAGTTC
TGTTGTGTTTTCGATTGGCGAGTCCCAACCCTGGCAAACACACAAATTTG
GCATTGCCATTTCAATATCATTACACGTACGATTGGCTGGTACCAAATCT
AAAAGCCCTTTCCTAAGGTGATCTTTCGAAATGAGTCTTTTAACCGTATG
ATGAACATCGATTAAGTTAACTAATCTGTACTGATTCGCTTTCAAATTCT
GGATTCCTCTTTTTCCAATAAGCTGTTGAACTTGCTCAGGTATCACCATG
AACAATGTTGGATGGAATTGCTCATAACGACCATCTAATTCCTGGAAAAC
ATAACTGGTATATGTATTACCATGGTCACTGAAAAATATAGTCAGT

Coding sequence (CDS) from alignment at sc0000005:878205..883750+

>TCONS_00000718 ID=TCONS_00000718|Name=TCONS_00000718|organism=Clytia hemisphaerica|type=CDS|length=4347bp|location=Sequence derived from alignment at sc0000005:878205..883750+ (Clytia hemisphaerica)
ATGGATTCCTTGGAAAGACATGCCAACATATATCAGAATGATAATACTGG
ATCTTTTGAACGTGCTGTGAGAGTAGTTACAGCATTTTATCCACCTTTTG
TCAAACAAGTTTCTCCAGACATATCTAATGTGACAGGTGATTACAAATGT
GGGCAAGCAAAACTCTGTGAGGTACCAAAGAAGAATCAAAACGGTACAGT
AACATGGACAGTGAGCTGCTGTACTGGGTACATTGTCGATAGTTTTGAAA
TGGtgcaaagaaaattaaattttgagtaTACTCTTTATATTGTTGAAGAT
GGAAAATGGGGCACTTTGGAAAACGAAACTTGGAATGGAATGATTGGTGA
TCTTGTTGATAAGAAAGCTGACCTTATTATCAATATCATGACACCTTTAG
AAATACGAGCTAAAGATATACATTTTACTCACCATTTTATGGAGTCAAAT
TTCGGAATCGTTAGAGTCAAAGAATACAATAGTGATATTCCAAGCTTTGA
TTTTCTGAAGCCTGTTGGTGGGAACTTACATTTTGCAATATTAGCTTCGA
CTATCTTGACTCTATTGACGATTTCATTTCTAGAAaattactttttgaaa
tttacaaaaaaacaagGAGTTTTCTTTCAAGAAACTATGGCTTATGTCTT
TGGATTAACATTCCAAAGAGATATGGGTGGTACAAATCCTCGAATGTGGT
CAGGGCGTCTAACTGCTCTTGGTTATGCATCTGCAATGACCATCATTATG
TCCGTCTATACTGCCAGAATCACTGCTAACTCTATTGGGCAGGTCGTTAT
GGATGATTTCAAAGGTTTCAAAGACAAAAAGTTTCAAAACCCATCTGAAG
ATTACAAATTTACTTTGGTTGGAGGTCAAGGTTGGGCCATAGAGAGTTTC
TTCAGAGATCATCCAGATGAAAGCTTTCAAAGAATGTACAAATTCATGtc
taagtattttgtgaaaACAGAAATTGAAGGAGTGAAAAAGCTTTTGGATG
GCACCATCCAAGCCTATATAGCTGATAGTGGTTCATTTCCAGTCGTTCTA
CAGCGAATCACTTCTGAATTAGGCTGTCCTAAAGAAATTGAGCTTTTAGA
AGAAAGCTTTATCGGAACACATGGACTTTCCTTTGCATATCGTAAAAACT
TCCCTTATGGAAAAACAATATCAAATACTTTGCTTGGTCTTTACCAGACA
GGCGCCTTGATTCGATTGAGAAAGAAATGGTTCCCAAGCTCTCATTGCAA
AGGAAAAACACCAGTACAGCAATTTGATTGGACTTATTTTTCCGGTATTC
TGGTCATCGTTGGCTATACTGTTATAATTGGAATATTTGTCAACCTTATT
GAACATTTTTACATGTTTCTCAGAAAAATGTACAAATCAAAGTCTGCTGA
TCTTACAGAACAGAAGAGGTCCACAAAGTACACCGAAACAAacatttgaA
TGGATTCCTTGGAAAGACATGCCAACATATATCAGAATGATAATACTGGA
TCTTTTGAACGTGCTGTGAGAGTAGTTACAGCATTTTATCCACCTTTTGT
CAAACAAGTTTCTCCAGACATATCTAATGTGACAGGTGATTACAAATGTG
GGCAAGCAAAACTCTGTGAGGTACCAAAGAAGAATCAAAACGGTACAGTA
ACATGGACAGTGAGCTGCTGTACTGGGTACATTGTCGATAGTTTTGAAAT
GGtgcaaagaaaattaaattttgagtaTACTCTTTATATTGTTGAAGATG
GAAAATGGGGCACTTTGGAAAACGAAACTTGGAATGGAATGATTGGTGAT
CTTGTTGATAAGAAAGCTGACCTTATTATCAATATCATGACACCTTTAGA
AATACGAGCTAAAGATATACATTTTACTCACCATTTTATGGAGTCAAATT
TCGGAATCGTTAGAGTCAAAGAATACAATAGTGATATTCCAAGCTTTGAT
TTTCTGAAGCCTGTTGGTGGGAACTTACATTTTGCAATATTAGCTTCGAC
TATCTTGACTCTATTGACGATTTCATTTCTAGAAaattactttttgaaat
ttacaaaaaaacaagGAGTTTTCTTTCAAGAAACTATGGCTTATGTCTTT
GGATTAACATTCCAAAGAGATATGGGTGGTACAAATCCTCGAATGTGGTC
AGGGCGTCTAACTGCTCTTGGTTATGCATCTGCAATGACCATCATTATGT
CCGTCTATACTGCCAGAATCACTGCTAACTCTATTGGGCAGGTCGTTATG
GATGATTTCAAAGGTTTCAAAGACAAAAAGTTTCAAAACCCATCTGAAGA
TTACAAATTTACTTTGGTTGGAGGTCAAGGTTGGGCCATAGAGAGTTTCT
TCAGAGATCATCCAGATGAAAGCTTTCAAAGAATGTACAAATTCATGtct
aagtattttgtgaaaACAGAAATTGAAGGAGTGAAAAAGCTTTTGGATGG
CACCATCCAAGCCTATATAGCTGATAGTGGTTCATTTCCAGTCGTTCTAC
AGCGAATCACTTCTGAATTAGGCTGTCCTAAAGAAATTGAGCTTTTAGAA
GAAAGCTTTATCGGAACACATGGACTTTCCTTTGCATATCGTAAAAACTT
CCCTTATGGAAAAACAATATCAAATACTTTGCTTGGTCTTTACCAGACAG
GCGCCTTGATTCGATTGAGAAAGAAATGGTTCCCAAGCTCTCATTGCAAA
GGAAAAACACCAGTACAGCAATTTGATTGGACTTATTTTTCCGGTATTCT
GGTCATCGTTGGCTATACTGTTATAATTGGAATATTTGTCAACCTTATTG
AACATTTTTACATGTTTCTCAGAAAAATGTACAAATCAAAGTCTGCTGAT
CTTACAGAACAGAAGAGGTCCACAAAGTACACCGAAACAAacatttgaAT
GGATTCCTTGGAAAGACATGCCAACATATATCAGAATGATAATACTGGAT
CTTTTGAACGTGCTGTGAGAGTAGTTACAGCATTTTATCCACCTTTTGTC
AAACAAGTTTCTCCAGACATATCTAATGTGACAGGTGATTACAAATGTGG
GCAAGCAAAACTCTGTGAGGTACCAAAGAAGAATCAAAACGGTACAGTAA
CATGGACAGTGAGCTGCTGTACTGGGTACATTGTCGATAGTTTTGAAATG
GtgcaaagaaaattaaattttgagtaTACTCTTTATATTGTTGAAGATGG
AAAATGGGGCACTTTGGAAAACGAAACTTGGAATGGAATGATTGGTGATC
TTGTTGATAAGAAAGCTGACCTTATTATCAATATCATGACACCTTTAGAA
ATACGAGCTAAAGATATACATTTTACTCACCATTTTATGGAGTCAAATTT
CGGAATCGTTAGAGTCAAAGAATACAATAGTGATATTCCAAGCTTTGATT
TTCTGAAGCCTGTTGGTGGGAACTTACATTTTGCAATATTAGCTTCGACT
ATCTTGACTCTATTGACGATTTCATTTCTAGAAaattactttttgaaatt
tacaaaaaaacaagGAGTTTTCTTTCAAGAAACTATGGCTTATGTCTTTG
GATTAACATTCCAAAGAGATATGGGTGGTACAAATCCTCGAATGTGGTCA
GGGCGTCTAACTGCTCTTGGTTATGCATCTGCAATGACCATCATTATGTC
CGTCTATACTGCCAGAATCACTGCTAACTCTATTGGGCAGGTCGTTATGG
ATGATTTCAAAGGTTTCAAAGACAAAAAGTTTCAAAACCCATCTGAAGAT
TACAAATTTACTTTGGTTGGAGGTCAAGGTTGGGCCATAGAGAGTTTCTT
CAGAGATCATCCAGATGAAAGCTTTCAAAGAATGTACAAATTCATGtcta
agtattttgtgaaaACAGAAATTGAAGGAGTGAAAAAGCTTTTGGATGGC
ACCATCCAAGCCTATATAGCTGATAGTGGTTCATTTCCAGTCGTTCTACA
GCGAATCACTTCTGAATTAGGCTGTCCTAAAGAAATTGAGCTTTTAGAAG
AAAGCTTTATCGGAACACATGGACTTTCCTTTGCATATCGTAAAAACTTC
CCTTATGGAAAAACAATATCAAATACTTTGCTTGGTCTTTACCAGACAGG
CGCCTTGATTCGATTGAGAAAGAAATGGTTCCCAAGCTCTCATTGCAAAG
GAAAAACACCAGTACAGCAATTTGATTGGACTTATTTTTCCGGTATTCTG
GTCATCGTTGGCTATACTGTTATAATTGGAATATTTGTCAACCTTATTGA
ACATTTTTACATGTTTCTCAGAAAAATGTACAAATCAAAGTCTGCTGATC
TTACAGAACAGAAGAGGTCCACAAAGTACACCGAAACAAacatttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000452XLOC_000452Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000718-proteinTCONS_00000718-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000718-exon-sc0000005-1491911889:878205..878260TCONS_00000718-exon-sc0000005-1491911889:878205..878260Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1510915933:878205..878260TCONS_00000718-exon-sc0000005-1510915933:878205..878260Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1575043694:878205..878260TCONS_00000718-exon-sc0000005-1575043694:878205..878260Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1491911889:878918..879434TCONS_00000718-exon-sc0000005-1491911889:878918..879434Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1510915933:878918..879434TCONS_00000718-exon-sc0000005-1510915933:878918..879434Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1575043694:878918..879434TCONS_00000718-exon-sc0000005-1575043694:878918..879434Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1491911889:879803..880643TCONS_00000718-exon-sc0000005-1491911889:879803..880643Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1510915933:879803..880643TCONS_00000718-exon-sc0000005-1510915933:879803..880643Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1575043694:879803..880643TCONS_00000718-exon-sc0000005-1575043694:879803..880643Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1491911889:880946..881115TCONS_00000718-exon-sc0000005-1491911889:880946..881115Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1510915933:880946..881115TCONS_00000718-exon-sc0000005-1510915933:880946..881115Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1575043694:880946..881115TCONS_00000718-exon-sc0000005-1575043694:880946..881115Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1491911889:881679..883750TCONS_00000718-exon-sc0000005-1491911889:881679..883750Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1510915933:881679..883750TCONS_00000718-exon-sc0000005-1510915933:881679..883750Clytia hemisphaericaexon
TCONS_00000718-exon-sc0000005-1575043694:881679..883750TCONS_00000718-exon-sc0000005-1575043694:881679..883750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:878205..883750 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.96689	3.4002	4.44367	5.94759	1.23687	1.92134	1.12491	0.926917	0.785818	0.626411	0.224598	0.338758	0	0.113336	1.04767	0.790549	0.123807	0.0728079	0.17109	0.418424	0.221031	0.433939	0.0423386	0.0753081	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001508Iono_rcpt_met
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0004872receptor activity
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0005216 ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
molecular_function GO:0004872 receptor activity
Blast
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BLAST of TCONS_00000718 vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.613e-27
Identity = 114/461 (24.73%), Postives = 211/461 (45.77%), Query Frame = 2 
Query:  650 VRVVTAFYPPFVKQVSPDISN--------VTGDYKCGQAKLCEVPKKNQNGTVTWTV-SCCTGYIVDSFEMVQRKLNFEYTLYIVEDGKWGTLE------NETWNGMIGDLVDKKADLIINIMTPLEIRAKDIHFTHHFMESNFGIVRVKEYNSDIP--SFD-FLKPVGGNLHXXXXXXXXXXXXXXXXXENY--FLKFT------KKQGVFFQETMAYVFGLTFQRDMGGTNPRMWSGRLTALGYASAMTIIMSVYTARITANSIGQVVMXXXXXXXXXXXQNPSEDYKFTLVGGQGWAIESFFRDHPDESFQRMYKFMSKYFVKTEIEGVKKLLDGTIQAYIADSGSFPVVLQRITSELGCPKEIELLE--ESFIGTHGLSFAYRKNFPYGKTISNTLLGLYQTGALIRLRKKWFPSSHCKGKTPV-QQFDWTYFSGILVIVGYTVIIGIFVNLIEHFY 1945
            +++VT    PFV  V P +S+        V GD    +  +C  P     G+   TV  CC G+ +D    + R +NF Y +++V DGK+GT E       + WNGM+G+L+  +AD+I+  +T    RA+ I F+  F      I+  KE    IP  + D F++P    L   +  S  +  + +  L+ +  F +F       ++  +     M + +G+     +G   PR +S R+  + +A    II++ YTA + A  +     +   G  D + +NPS+ + +  V  +  +++ +FR   +     MY+ M K+  ++  E ++ + D  + A+I DS            E    ++ +L+   E F  + G     RK+ P+ + +S ++L  ++ G +  L K W     C  ++       +   +G+ ++V   ++ GIF+  IE  Y
Sbjct:  398 LKIVTIHQEPFV-YVKPTLSDGTCKEEFTVNGDPV--KKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKE----IPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATV--KQSSVDIYFRRQVE--LSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVL---------EFEASQKCDLVTTGELFFRS-GFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAY 837
The following BLAST results are available for this feature:
BLAST of TCONS_00000718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDZ12.613e-2724.73Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi... [more]
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