Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000663
Unique NameTCONS_00000663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000663 ID=TCONS_00000663|Name=TCONS_00000663|organism=Clytia hemisphaerica|type=transcript|length=1838bp
gtttcagatgaaaatagaaaataacgaaaataacGAAACCGTGGAAAACG
AGTCGTATCGAAATCCATCACCTCCACCATTAACAGATGCTGAAAAGGAA
AGTGTAACTGGAGACTTAATTGGCAATACAATTTTCAGTCAGCGATGGGT
ACTTGATGTGCTACTTAAATTGTATAAGCACGAAGAAGACACTATTTATA
CATCGCTGgttgaaaacatcaaaaacgaGGAGAAAGAACAAGGGTCTGAA
CACACTTCAGATAATAATGAACGTTTTCTGAAAGATGATTTCGAAAATGA
CCTTTGTCAATTATGGGACATGACTGCGAACAGTGAAGTTGCTTTGTTTA
TTACCGAGCatgattcaaaaaatattcttctaGATGCGTTGAGACAGACA
CAATCCCCACGTTTAATGGAGATTTGTTTCGGAATTCTTGGGAACTTATT
TTGTGTCAAAGAAATAGGTTCTTCGTTAAGTCAAGATGGGGAAATGAGAT
GTGAGATTTTAAGCTATTTAACAGTTATGGATGCGTTAAGCCTTGTGGAG
CTTACACGATTGTTGTGCACGTGTTTATCATGTCATTCGACACTGTTGCT
ATGGGTAAACGACTGTTGCCAAGGCAAAAACCTTGAACATCTTTTGTATC
TATTGAATAATACACTGAACGTTACTTTGCTTTGTCATGTTGTTAAAAAT
TTGGAGATTATTTTTGACGAGTGCGAGGATCCACTTGACTCGTTTATTAC
CAGTGAATTTATTGATGGAGTTATCGAGTCATTTGACTCGCTAAATGAGA
AAGGTGACCGAGTTGAGTATTTAGTCTCGATGATATACTTATTACAAATT
CTAACAACTAACAATAAAGGTAATGAGATAATATCGAACAAGAAAGAAAC
CTTATTACACTTATTTTCGAAATATTATCATTTGGCTGATGTAAAAGGAG
GCTGTGAAATGACCGAATCTAATCGGTTAACTATCTATGCTTCTATTTTA
TCCATTCTCGATTCGTTGGTGTCTGAGCATAAAGAGATCGTCTCTGAAAA
GAATCGAAAGTTCGTTCAACAAAGTGTAGAATATTTTTCTCGTTATATTA
CTGACGAGCTACAAGACGAAAATACTAACGAATTTCAAGTTGTGGTTTTA
TGTTTCGAGCATTTAGCCTCGTTGCTGACAAAATTGGAGAGCGGTGTGCT
AAATCTTTATAAAGAAGCAGTTGACAAACTTATGAATGCCATAAAATCGA
GTAAATTCGCATCGACATTTTTAGGATATTTTACAAAACCAGTTTTATTA
GTAGAATTTCAATCGTAATCTCTCacaaaattttgtaatttcttcATAAA
TTTCAATATACAAGTTTTCAGTAAAACACTTCTTCTACTTTTCCAgaatt
atttttggacctaccccggtggggtggaggtcctataaattcacctctgt
ccgtccgtccgttcgttaccagcttttctcgagattgaatcataggaatc
atctgatttttggtacaaaggtgcaaaatggtggtggccaaaatgtagca
gagtccgattttcgaaaaaaaaatttgggggccaatttgggccaaaaaac
ggctaaaaaacgggttttttggactttgtgaaaaattggatcattaattt
tttctgattttttacatgaaagtatgtaccatcataggtaaaagatggct
caagcagatttttgcaaaaaaatttatttggcttaaaaaacgcatgttta
tctataagaatcactattaataagcatacatcaatgttcttagtcaaatt
actcaatttttttatgagatatatgtttttttttgctc
Run BLAST on NCBI

protein sequence of TCONS_00000663-protein

>TCONS_00000663-protein ID=TCONS_00000663-protein|Name=TCONS_00000663-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
FQMKIENNENNETVENESYRNPSPPPLTDAEKESVTGDLIGNTIFSQRWV
LDVLLKLYKHEEDTIYTSLVENIKNEEKEQGSEHTSDNNERFLKDDFEND
LCQLWDMTANSEVALFITEHDSKNILLDALRQTQSPRLMEICFGILGNLF
CVKEIGSSLSQDGEMRCEILSYLTVMDALSLVELTRLLCTCLSCHSTLLL
WVNDCCQGKNLEHLLYLLNNTLNVTLLCHVVKNLEIIFDECEDPLDSFIT
SEFIDGVIESFDSLNEKGDRVEYLVSMIYLLQILTTNNKGNEIISNKKET
LLHLFSKYYHLADVKGGCEMTESNRLTIYASILSILDSLVSEHKEIVSEK
NRKFVQQSVEYFSRYITDELQDENTNEFQVVVLCFEHLASLLTKLESGVL
NLYKEAVDKLMNAIKSSKFASTFLGYFTKPVLLVEFQS
Run BLAST on NCBI

transcript from alignment at sc0000002:1315588..1317425

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000663 ID=TCONS_00000663|Name=TCONS_00000663|organism=Clytia hemisphaerica|type=transcript|length=1838bp|location=Sequence derived from alignment at sc0000002:1315588..1317425 (Clytia hemisphaerica)
gagcaaaaaaaaacatatatctcataaaaaaattgagtaatttgactaag aacattgatgtatgcttattaatagtgattcttatagataaacatgcgtt ttttaagccaaataaatttttttgcaaaaatctgcttgagccatctttta cctatgatggtacatactttcatgtaaaaaatcagaaaaaattaatgatc caatttttcacaaagtccaaaaaacccgttttttagccgttttttggccc aaattggcccccaaatttttttttcgaaaatcggactctgctacattttg gccaccaccattttgcacctttgtaccaaaaatcagatgattcctatgat tcaatctcgagaaaagctggtaacgaacggacggacggacagaggtgaat ttataggacctccaccccaccggggtaggtccaaaaataattcTGGAAAA GTAGAAGAAGTGTTTTACTGAAAACTTGTATATTGAAATTTATgaagaaa ttacaaaattttgtGAGAGATTACGATTGAAATTCTACTAATAAAACTGG TTTTGTAAAATATCCTAAAAATGTCGATGCGAATTTACTCGATTTTATGG CATTCATAAGTTTGTCAACTGCTTCTTTATAAAGATTTAGCACACCGCTC TCCAATTTTGTCAGCAACGAGGCTAAATGCTCGAAACATAAAACCACAAC TTGAAATTCGTTAGTATTTTCGTCTTGTAGCTCGTCAGTAATATAACGAG AAAAATATTCTACACTTTGTTGAACGAACTTTCGATTCTTTTCAGAGACG ATCTCTTTATGCTCAGACACCAACGAATCGAGAATGGATAAAATAGAAGC ATAGATAGTTAACCGATTAGATTCGGTCATTTCACAGCCTCCTTTTACAT CAGCCAAATGATAATATTTCGAAAATAAGTGTAATAAGGTTTCTTTCTTG TTCGATATTATCTCATTACCTTTATTGTTAGTTGTTAGAATTTGTAATAA GTATATCATCGAGACTAAATACTCAACTCGGTCACCTTTCTCATTTAGCG AGTCAAATGACTCGATAACTCCATCAATAAATTCACTGGTAATAAACGAG TCAAGTGGATCCTCGCACTCGTCAAAAATAATCTCCAAATTTTTAACAAC ATGACAAAGCAAAGTAACGTTCAGTGTATTATTCAATAGATACAAAAGAT GTTCAAGGTTTTTGCCTTGGCAACAGTCGTTTACCCATAGCAACAGTGTC GAATGACATGATAAACACGTGCACAACAATCGTGTAAGCTCCACAAGGCT TAACGCATCCATAACTGTTAAATAGCTTAAAATCTCACATCTCATTTCCC CATCTTGACTTAACGAAGAACCTATTTCTTTGACACAAAATAAGTTCCCA AGAATTCCGAAACAAATCTCCATTAAACGTGGGGATTGTGTCTGTCTCAA CGCATCtagaagaatattttttgaatcatGCTCGGTAATAAACAAAGCAA CTTCACTGTTCGCAGTCATGTCCCATAATTGACAAAGGTCATTTTCGAAA TCATCTTTCAGAAAACGTTCATTATTATCTGAAGTGTGTTCAGACCCTTG TTCTTTCTCCtcgtttttgatgttttcaacCAGCGATGTATAAATAGTGT CTTCTTCGTGCTTATACAATTTAAGTAGCACATCAAGTACCCATCGCTGA CTGAAAATTGTATTGCCAATTAAGTCTCCAGTTACACTTTCCTTTTCAGC ATCTGTTAATGGTGGAGGTGATGGATTTCGATACGACTCGTTTTCCACGG TTTCgttattttcgttattttctattttcatctgaaac

Coding sequence (CDS) from alignment at sc0000002:1315588..1317425

>TCONS_00000663 ID=TCONS_00000663|Name=TCONS_00000663|organism=Clytia hemisphaerica|type=CDS|length=1317bp|location=Sequence derived from alignment at sc0000002:1315588..1317425 (Clytia hemisphaerica)
TTACGATTGAAATTCTACTAATAAAACTGGTTTTGTAAAATATCCTAAAA
ATGTCGATGCGAATTTACTCGATTTTATGGCATTCATAAGTTTGTCAACT
GCTTCTTTATAAAGATTTAGCACACCGCTCTCCAATTTTGTCAGCAACGA
GGCTAAATGCTCGAAACATAAAACCACAACTTGAAATTCGTTAGTATTTT
CGTCTTGTAGCTCGTCAGTAATATAACGAGAAAAATATTCTACACTTTGT
TGAACGAACTTTCGATTCTTTTCAGAGACGATCTCTTTATGCTCAGACAC
CAACGAATCGAGAATGGATAAAATAGAAGCATAGATAGTTAACCGATTAG
ATTCGGTCATTTCACAGCCTCCTTTTACATCAGCCAAATGATAATATTTC
GAAAATAAGTGTAATAAGGTTTCTTTCTTGTTCGATATTATCTCATTACC
TTTATTGTTAGTTGTTAGAATTTGTAATAAGTATATCATCGAGACTAAAT
ACTCAACTCGGTCACCTTTCTCATTTAGCGAGTCAAATGACTCGATAACT
CCATCAATAAATTCACTGGTAATAAACGAGTCAAGTGGATCCTCGCACTC
GTCAAAAATAATCTCCAAATTTTTAACAACATGACAAAGCAAAGTAACGT
TCAGTGTATTATTCAATAGATACAAAAGATGTTCAAGGTTTTTGCCTTGG
CAACAGTCGTTTACCCATAGCAACAGTGTCGAATGACATGATAAACACGT
GCACAACAATCGTGTAAGCTCCACAAGGCTTAACGCATCCATAACTGTTA
AATAGCTTAAAATCTCACATCTCATTTCCCCATCTTGACTTAACGAAGAA
CCTATTTCTTTGACACAAAATAAGTTCCCAAGAATTCCGAAACAAATCTC
CATTAAACGTGGGGATTGTGTCTGTCTCAACGCATCtagaagaatatttt
ttgaatcatGCTCGGTAATAAACAAAGCAACTTCACTGTTCGCAGTCATG
TCCCATAATTGACAAAGGTCATTTTCGAAATCATCTTTCAGAAAACGTTC
ATTATTATCTGAAGTGTGTTCAGACCCTTGTTCTTTCTCCtcgtttttga
tgttttcaacCAGCGATGTATAAATAGTGTCTTCTTCGTGCTTATACAAT
TTAAGTAGCACATCAAGTACCCATCGCTGACTGAAAATTGTATTGCCAAT
TAAGTCTCCAGTTACACTTTCCTTTTCAGCATCTGTTAATGGTGGAGGTG
ATGGATTTCGATACGACTCGTTTTCCACGGTTTCgttattttcgttattt
tctattttcatctgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000409XLOC_000409Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000663-proteinTCONS_00000663-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000663-exon-sc0000002-1491911889:1315588..1317425TCONS_00000663-exon-sc0000002-1491911889:1315588..1317425Clytia hemisphaericaexon
TCONS_00000663-exon-sc0000002-1510915933:1315588..1317425TCONS_00000663-exon-sc0000002-1510915933:1315588..1317425Clytia hemisphaericaexon
TCONS_00000663-exon-sc0000002-1575043694:1315588..1317425TCONS_00000663-exon-sc0000002-1575043694:1315588..1317425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1315588..1317425 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.7404 10.2008 8.27933 7.98275 4.33086 3.67885 4.67063 5.49125 3.43287 3.27839 3.98359 3.09039 2.07153 2.45316 2.56775 3.46904 3.20465 3.49154 2.5955 1.9912 3.72786 3.88014 23.5016 19.0643 2.92245 3.35501 3.93537 4.51063 10.5038 13.0143
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
Blast
BLAST of TCONS_00000663 vs. Swiss-Prot (Human)
Match: SAAL1 (Protein SAAL1 OS=Homo sapiens GN=SAAL1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.094e-24
Identity = 68/188 (36.17%), Postives = 110/188 (58.51%), Query Frame = 2
Query:   59 RNPSPPPL---TDAEKESVTGDLIGNTIFSQRWVLDVLLKLYKHEEDTIYTSLVENIKNEEKEQGSEHTSDNNERF--LKDDFENDLCQLWDMTANSEVALFITEHDSKNILLDALRQTQSPRLMEICFGILGNLFCVKEIGSSLSQDGEMRCEILSYLTVMDALSLVEXXXXXXXXXXXXXXXXXWV 607
            RNPSPPP     + E+E   GD IG+T++S+ W+  VL            + L++ +  E     ++ +SD+ E+   L ++ EN++C++WDM+ + +VALF+ E ++ +I +  L +++ PRL EIC GILGN+ C +EI  S+S D  +   +L  L   D  +L+E +RLL TCLS      +WV
Sbjct:    3 RNPSPPPPGRDKEEEEEVAGGDCIGSTVYSKHWLFGVL------------SGLIQIVSPE----NTKSSSDDEEQLTELDEEMENEICRVWDMSMDEDVALFLQEFNAPDIFMGVLAKSKCPRLREICVGILGNMACFQEICVSISSDKNLGQVLLHCLYDSDPPTLLETSRLLLTCLSQAEVASVWV 174          
The following BLAST results are available for this feature:
BLAST of TCONS_00000663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SAAL11.094e-2436.17Protein SAAL1 OS=Homo sapiens GN=SAAL1 PE=1 SV=2[more]
back to top