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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000663 ID=TCONS_00000663|Name=TCONS_00000663|organism=Clytia hemisphaerica|type=transcript|length=1838bp
gtttcagatgaaaatagaaaataacgaaaataacGAAACCGTGGAAAACG
AGTCGTATCGAAATCCATCACCTCCACCATTAACAGATGCTGAAAAGGAA
AGTGTAACTGGAGACTTAATTGGCAATACAATTTTCAGTCAGCGATGGGT
ACTTGATGTGCTACTTAAATTGTATAAGCACGAAGAAGACACTATTTATA
CATCGCTGgttgaaaacatcaaaaacgaGGAGAAAGAACAAGGGTCTGAA
CACACTTCAGATAATAATGAACGTTTTCTGAAAGATGATTTCGAAAATGA
CCTTTGTCAATTATGGGACATGACTGCGAACAGTGAAGTTGCTTTGTTTA
TTACCGAGCatgattcaaaaaatattcttctaGATGCGTTGAGACAGACA
CAATCCCCACGTTTAATGGAGATTTGTTTCGGAATTCTTGGGAACTTATT
TTGTGTCAAAGAAATAGGTTCTTCGTTAAGTCAAGATGGGGAAATGAGAT
GTGAGATTTTAAGCTATTTAACAGTTATGGATGCGTTAAGCCTTGTGGAG
CTTACACGATTGTTGTGCACGTGTTTATCATGTCATTCGACACTGTTGCT
ATGGGTAAACGACTGTTGCCAAGGCAAAAACCTTGAACATCTTTTGTATC
TATTGAATAATACACTGAACGTTACTTTGCTTTGTCATGTTGTTAAAAAT
TTGGAGATTATTTTTGACGAGTGCGAGGATCCACTTGACTCGTTTATTAC
CAGTGAATTTATTGATGGAGTTATCGAGTCATTTGACTCGCTAAATGAGA
AAGGTGACCGAGTTGAGTATTTAGTCTCGATGATATACTTATTACAAATT
CTAACAACTAACAATAAAGGTAATGAGATAATATCGAACAAGAAAGAAAC
CTTATTACACTTATTTTCGAAATATTATCATTTGGCTGATGTAAAAGGAG
GCTGTGAAATGACCGAATCTAATCGGTTAACTATCTATGCTTCTATTTTA
TCCATTCTCGATTCGTTGGTGTCTGAGCATAAAGAGATCGTCTCTGAAAA
GAATCGAAAGTTCGTTCAACAAAGTGTAGAATATTTTTCTCGTTATATTA
CTGACGAGCTACAAGACGAAAATACTAACGAATTTCAAGTTGTGGTTTTA
TGTTTCGAGCATTTAGCCTCGTTGCTGACAAAATTGGAGAGCGGTGTGCT
AAATCTTTATAAAGAAGCAGTTGACAAACTTATGAATGCCATAAAATCGA
GTAAATTCGCATCGACATTTTTAGGATATTTTACAAAACCAGTTTTATTA
GTAGAATTTCAATCGTAATCTCTCacaaaattttgtaatttcttcATAAA
TTTCAATATACAAGTTTTCAGTAAAACACTTCTTCTACTTTTCCAgaatt
atttttggacctaccccggtggggtggaggtcctataaattcacctctgt
ccgtccgtccgttcgttaccagcttttctcgagattgaatcataggaatc
atctgatttttggtacaaaggtgcaaaatggtggtggccaaaatgtagca
gagtccgattttcgaaaaaaaaatttgggggccaatttgggccaaaaaac
ggctaaaaaacgggttttttggactttgtgaaaaattggatcattaattt
tttctgattttttacatgaaagtatgtaccatcataggtaaaagatggct
caagcagatttttgcaaaaaaatttatttggcttaaaaaacgcatgttta
tctataagaatcactattaataagcatacatcaatgttcttagtcaaatt
actcaatttttttatgagatatatgtttttttttgctc Run BLAST on NCBI protein sequence of TCONS_00000663-protein >TCONS_00000663-protein ID=TCONS_00000663-protein|Name=TCONS_00000663-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
FQMKIENNENNETVENESYRNPSPPPLTDAEKESVTGDLIGNTIFSQRWV
LDVLLKLYKHEEDTIYTSLVENIKNEEKEQGSEHTSDNNERFLKDDFEND
LCQLWDMTANSEVALFITEHDSKNILLDALRQTQSPRLMEICFGILGNLF
CVKEIGSSLSQDGEMRCEILSYLTVMDALSLVELTRLLCTCLSCHSTLLL
WVNDCCQGKNLEHLLYLLNNTLNVTLLCHVVKNLEIIFDECEDPLDSFIT
SEFIDGVIESFDSLNEKGDRVEYLVSMIYLLQILTTNNKGNEIISNKKET
LLHLFSKYYHLADVKGGCEMTESNRLTIYASILSILDSLVSEHKEIVSEK
NRKFVQQSVEYFSRYITDELQDENTNEFQVVVLCFEHLASLLTKLESGVL
NLYKEAVDKLMNAIKSSKFASTFLGYFTKPVLLVEFQS Run BLAST on NCBI transcript from alignment at sc0000002:1315588..1317425 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000663 ID=TCONS_00000663|Name=TCONS_00000663|organism=Clytia hemisphaerica|type=transcript|length=1838bp|location=Sequence derived from alignment at sc0000002:1315588..1317425 (Clytia hemisphaerica)
gagcaaaaaaaaacatatatctcataaaaaaattgagtaatttgactaag
aacattgatgtatgcttattaatagtgattcttatagataaacatgcgtt
ttttaagccaaataaatttttttgcaaaaatctgcttgagccatctttta
cctatgatggtacatactttcatgtaaaaaatcagaaaaaattaatgatc
caatttttcacaaagtccaaaaaacccgttttttagccgttttttggccc
aaattggcccccaaatttttttttcgaaaatcggactctgctacattttg
gccaccaccattttgcacctttgtaccaaaaatcagatgattcctatgat
tcaatctcgagaaaagctggtaacgaacggacggacggacagaggtgaat
ttataggacctccaccccaccggggtaggtccaaaaataattcTGGAAAA
GTAGAAGAAGTGTTTTACTGAAAACTTGTATATTGAAATTTATgaagaaa
ttacaaaattttgtGAGAGATTACGATTGAAATTCTACTAATAAAACTGG
TTTTGTAAAATATCCTAAAAATGTCGATGCGAATTTACTCGATTTTATGG
CATTCATAAGTTTGTCAACTGCTTCTTTATAAAGATTTAGCACACCGCTC
TCCAATTTTGTCAGCAACGAGGCTAAATGCTCGAAACATAAAACCACAAC
TTGAAATTCGTTAGTATTTTCGTCTTGTAGCTCGTCAGTAATATAACGAG
AAAAATATTCTACACTTTGTTGAACGAACTTTCGATTCTTTTCAGAGACG
ATCTCTTTATGCTCAGACACCAACGAATCGAGAATGGATAAAATAGAAGC
ATAGATAGTTAACCGATTAGATTCGGTCATTTCACAGCCTCCTTTTACAT
CAGCCAAATGATAATATTTCGAAAATAAGTGTAATAAGGTTTCTTTCTTG
TTCGATATTATCTCATTACCTTTATTGTTAGTTGTTAGAATTTGTAATAA
GTATATCATCGAGACTAAATACTCAACTCGGTCACCTTTCTCATTTAGCG
AGTCAAATGACTCGATAACTCCATCAATAAATTCACTGGTAATAAACGAG
TCAAGTGGATCCTCGCACTCGTCAAAAATAATCTCCAAATTTTTAACAAC
ATGACAAAGCAAAGTAACGTTCAGTGTATTATTCAATAGATACAAAAGAT
GTTCAAGGTTTTTGCCTTGGCAACAGTCGTTTACCCATAGCAACAGTGTC
GAATGACATGATAAACACGTGCACAACAATCGTGTAAGCTCCACAAGGCT
TAACGCATCCATAACTGTTAAATAGCTTAAAATCTCACATCTCATTTCCC
CATCTTGACTTAACGAAGAACCTATTTCTTTGACACAAAATAAGTTCCCA
AGAATTCCGAAACAAATCTCCATTAAACGTGGGGATTGTGTCTGTCTCAA
CGCATCtagaagaatattttttgaatcatGCTCGGTAATAAACAAAGCAA
CTTCACTGTTCGCAGTCATGTCCCATAATTGACAAAGGTCATTTTCGAAA
TCATCTTTCAGAAAACGTTCATTATTATCTGAAGTGTGTTCAGACCCTTG
TTCTTTCTCCtcgtttttgatgttttcaacCAGCGATGTATAAATAGTGT
CTTCTTCGTGCTTATACAATTTAAGTAGCACATCAAGTACCCATCGCTGA
CTGAAAATTGTATTGCCAATTAAGTCTCCAGTTACACTTTCCTTTTCAGC
ATCTGTTAATGGTGGAGGTGATGGATTTCGATACGACTCGTTTTCCACGG
TTTCgttattttcgttattttctattttcatctgaaac Coding sequence (CDS) from alignment at sc0000002:1315588..1317425 >TCONS_00000663 ID=TCONS_00000663|Name=TCONS_00000663|organism=Clytia hemisphaerica|type=CDS|length=1317bp|location=Sequence derived from alignment at sc0000002:1315588..1317425 (Clytia hemisphaerica)
TTACGATTGAAATTCTACTAATAAAACTGGTTTTGTAAAATATCCTAAAA
ATGTCGATGCGAATTTACTCGATTTTATGGCATTCATAAGTTTGTCAACT
GCTTCTTTATAAAGATTTAGCACACCGCTCTCCAATTTTGTCAGCAACGA
GGCTAAATGCTCGAAACATAAAACCACAACTTGAAATTCGTTAGTATTTT
CGTCTTGTAGCTCGTCAGTAATATAACGAGAAAAATATTCTACACTTTGT
TGAACGAACTTTCGATTCTTTTCAGAGACGATCTCTTTATGCTCAGACAC
CAACGAATCGAGAATGGATAAAATAGAAGCATAGATAGTTAACCGATTAG
ATTCGGTCATTTCACAGCCTCCTTTTACATCAGCCAAATGATAATATTTC
GAAAATAAGTGTAATAAGGTTTCTTTCTTGTTCGATATTATCTCATTACC
TTTATTGTTAGTTGTTAGAATTTGTAATAAGTATATCATCGAGACTAAAT
ACTCAACTCGGTCACCTTTCTCATTTAGCGAGTCAAATGACTCGATAACT
CCATCAATAAATTCACTGGTAATAAACGAGTCAAGTGGATCCTCGCACTC
GTCAAAAATAATCTCCAAATTTTTAACAACATGACAAAGCAAAGTAACGT
TCAGTGTATTATTCAATAGATACAAAAGATGTTCAAGGTTTTTGCCTTGG
CAACAGTCGTTTACCCATAGCAACAGTGTCGAATGACATGATAAACACGT
GCACAACAATCGTGTAAGCTCCACAAGGCTTAACGCATCCATAACTGTTA
AATAGCTTAAAATCTCACATCTCATTTCCCCATCTTGACTTAACGAAGAA
CCTATTTCTTTGACACAAAATAAGTTCCCAAGAATTCCGAAACAAATCTC
CATTAAACGTGGGGATTGTGTCTGTCTCAACGCATCtagaagaatatttt
ttgaatcatGCTCGGTAATAAACAAAGCAACTTCACTGTTCGCAGTCATG
TCCCATAATTGACAAAGGTCATTTTCGAAATCATCTTTCAGAAAACGTTC
ATTATTATCTGAAGTGTGTTCAGACCCTTGTTCTTTCTCCtcgtttttga
tgttttcaacCAGCGATGTATAAATAGTGTCTTCTTCGTGCTTATACAAT
TTAAGTAGCACATCAAGTACCCATCGCTGACTGAAAATTGTATTGCCAAT
TAAGTCTCCAGTTACACTTTCCTTTTCAGCATCTGTTAATGGTGGAGGTG
ATGGATTTCGATACGACTCGTTTTCCACGGTTTCgttattttcgttattt
tctattttcatctgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000663-exon-sc0000002-1491911889:1315588..1317425 | TCONS_00000663-exon-sc0000002-1491911889:1315588..1317425 | Clytia hemisphaerica | exon |
| TCONS_00000663-exon-sc0000002-1510915933:1315588..1317425 | TCONS_00000663-exon-sc0000002-1510915933:1315588..1317425 | Clytia hemisphaerica | exon |
| TCONS_00000663-exon-sc0000002-1575043694:1315588..1317425 | TCONS_00000663-exon-sc0000002-1575043694:1315588..1317425 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1315588..1317425 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011989 | ARM-like |
Blast
BLAST of TCONS_00000663 vs. Swiss-Prot (Human)
Match: SAAL1 (Protein SAAL1 OS=Homo sapiens GN=SAAL1 PE=1 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 1.094e-24 Identity = 68/188 (36.17%), Postives = 110/188 (58.51%), Query Frame = 2
Query: 59 RNPSPPPL---TDAEKESVTGDLIGNTIFSQRWVLDVLLKLYKHEEDTIYTSLVENIKNEEKEQGSEHTSDNNERF--LKDDFENDLCQLWDMTANSEVALFITEHDSKNILLDALRQTQSPRLMEICFGILGNLFCVKEIGSSLSQDGEMRCEILSYLTVMDALSLVEXXXXXXXXXXXXXXXXXWV 607
RNPSPPP + E+E GD IG+T++S+ W+ VL + L++ + E ++ +SD+ E+ L ++ EN++C++WDM+ + +VALF+ E ++ +I + L +++ PRL EIC GILGN+ C +EI S+S D + +L L D +L+E +RLL TCLS +WV
Sbjct: 3 RNPSPPPPGRDKEEEEEVAGGDCIGSTVYSKHWLFGVL------------SGLIQIVSPE----NTKSSSDDEEQLTELDEEMENEICRVWDMSMDEDVALFLQEFNAPDIFMGVLAKSKCPRLREICVGILGNMACFQEICVSISSDKNLGQVLLHCLYDSDPPTLLETSRLLLTCLSQAEVASVWV 174
The following BLAST results are available for this feature:
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