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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000643 ID=TCONS_00000643|Name=TCONS_00000643|organism=Clytia hemisphaerica|type=transcript|length=3449bp
GGAACTTTTCACCATAAAATAAAGGGGTGAAAACCGTTAAAGCTTTCCAA
AACTTCCTGTTGTAAAgattagaaaaacaaaaaaacacaagCTTCTAAGC
ATTGAAAAATAATAGGTTAATAGGGTTCTAGACATAACCTGCAGCTTCGG
TTATGCCAATGTCGTTGATGTTAATGGCAGCTTTCTTTGGGATTCTGCTT
CCCCTTATGCATAGAACTGTAGAACGAATGAGtgcaaaagaaattttcgt
TCTCAGATAGTTCAAAGTAAGAGAGAAAAGTTCACCTCTCTTTTCAGCCA
TTAGTGCTGCAAGGGAACGAATGAAAATCTGTGCTTCCCTGCCAGTTCCG
CCATTGGTAGTAAAAACAAGCGGCGTAAAAAAGCCTCCTTCAATCCTGAT
GATGCGATCATTATAGTGTCTCTTTTTTTCCCTTTCGTTAGCTTCAAACA
TGCTAGACAGGCTCTTCCTAGAGTACCTTTGGGCATAGGCATTGAATACC
CTAACATAAAAAAATGCCCTCTGGCCTCTAGTCCAGAACCCCATAGCGCT
GATATCCGCTCTTGCTCCGTCCTCTCTGATCGTGCCAGGTGTTAAGTCCT
CTCCAGTAATGGGTTCTAGGCTTGGCTCGACCGCAACATCTTTCTTGACT
TCACTCAGTAGTGTCGATAGAGTGTCTCTTATCTCATTGTGTCTCTTATA
GACGAAACCTCCTTTTGGGCACGATAGTGCATGTTCGATTGTGAAACGAT
TACCACATGCGCAATTGGTGGGGAGATGTTTAAGTTGCCATCGATAGCGG
ATTGAGATGGAATCAAAGAACTCTTGTTTCGTTAAATTAAAATTCTCACA
TTTCAGTGGTTTTGCTGTGAGCCAGTTTGAGGCCCCTTTTATCTGAGCAA
GTTCGTTAGCCTTTCTCTGATCCGGTGTTATTTCCGTTCTTAATTCGTCC
AATAACCTTTGATGTCTAGCCTCATTCTCTCTCATGATCTTATACTTCAC
TTTTGTGTTGTTTCCCGGAAACTCTGTCGTTTGTGAGATGATGTTCTTGC
AGAGTTCATCACTGACTGTTTGAGAGTTCTTATACTCTGTACTGGCAATT
TCAGATAGGATAGGTAAGCCTAGGCCACCAAGTCTGACTGCGGGAGAGTT
AAAAGCTTCCTTTCAAGTCTGCTGCATCGATGACCTTCTGTCAAAGCTGG
TATCAGATGGTTGTCAATTGCTTCGTCTAGTGGTATGAGCAGCTCATCAA
TGTCCTTAAGCACACGTAAATGGTAAGTAAATTTGTGGATGAAGCCACCG
ACGAATGAACTATAGGCGCATTGGGGTTGTGATTTCGCAATCTCGCTGAG
TGTTTCGATTTGTTTCACCCATTTCTCAACAAGTCCCTTGAAATAATCAG
TTTTGAAATCTTGTGTACCTAGTGTTCCTCCCAAGTACTTTCTTCCTGTG
CAAATAATATTTACATTAGTCCCTGTAAAAATACGTTCTGCCTCAGTAAA
GTCCTCGTCCCTAACCACTAACCACGATTTTGATGCCTTGGGGTAGTATC
CAAAGATAGGACCAAGTCTTTCTACTGGCGGGCCACCATCTCAATAGGTT
TTGGAGGCCACCGGCTCCTGCTAGGTCATCGGCATAAGCAACACTCTTTA
CATCGTTGGAATCGACCTCTTCACGAAGAAGCTGTTGGAGTGGTAGGAGA
TCACCTTGCGTTGTTCCTTCCGCTGATGTTATCTCAATACCTCCATCGAC
AAATAAACGTGAATTCCTAGCATAACAATTATGTACATATGCTGCGATTG
CTGGACATAGTGCCTTAATATTACGAAGAAAAGCAGATCGATTAAGAGAG
TTAAAGGCATTTGATGCGTCAACAAGAAGGATTCCGTCAGACCCTTCTTC
AAGAAAAATAGAATACATTGCATGAACTGAGGCCTCACATCCAGCCTGTT
GTCCGGCACAGACCTGTAGAGAACCTGCAGCTTTCATTATGTCCTCTTTC
ACTACTGATATTAAAGCTTTCCCAAAAATGCGACGAATTACTTCTCCTAT
CCCTATCGGTCGGACACCAGGGTCTTTATCTAAATGTATAAGACGACATG
CCAAGAAAGCTTCAATGTCTCTTTCACGTGAATCTAAAGAAAGTGATTGG
CGACACACGGTTTTAAGCATAGTTGGTAGTTCAGTTCGAAATTCTTCCCC
AGTTTTCCCATAGTTTCTTGAGGCAAGAAGCTGTCAATCTGTTCATACAC
TATGGGGTCTATTGGAATGATGGGTTTATTTACTATTGCTTCTGGCTGTG
GTACAACACTTTCAGGGTGAAGGTTGAGTAAAGTGTTTTTGATAGTTTCA
TTTAATCCTAGAACGCCTTTGGTagatgagttttccagtaaacgTAGGGC
TGCACGAATATTTCCCCGAAGCATGTGTTTGGTAAACTCAGCTGTTAAGG
TTTGCTCAGTTTTCGATTTGTTCTTAGTTAGTCTTGATTGGATCTCTCGA
GATTCATTCAATAATTTCTCAAAACTTCCATCTCTCCATAGAATTAGACG
TCGTTGTAGGGCATGGGTGTGGTCCTTGGCTTTTGATCGAGGGTGAGGTT
TTTGGAGGAGGAGGGCAGGCATACACATCATCATTTTTACGGAGACTTCA
GATAAACCGGCTGAGTTAGAGTTCCAATAATTAACGAGTTTCGTACTCTC
GGTAATGAACTCTTTTCCTGCTTTACCCGATGGTAGCAGAAATAGATTTT
TACGAAAATAAACAATTTCCTCGTAGCATGAGTTTATTATATCGTGTAGG
TTGGATAGGGTATGATCTCCCcagattttattttcagttttgttCTGCTC
GGATGTTTCTGGTTGTTGGGTAGGTTGGGTGGTTGATGGTTGGGTAGGTT
TGGTGGTTGATGGTTGCGTAGGTTGGGTGGTTGATGGTTGGGTAGGTTGG
GTGGTCGATGGTTGGCTGGTTGATGGTTTGGTAGATTGGGCTGTTGACGG
TGGCTGAAAATTATCTGTAGAGTTGTTGCTTGGATTAGAGGTGGTGGTGT
TAGGAGGGTTGTTTGATGAGAATTGGTGTTTTTGTTGACGGTTGCTGGCA
CATTTTCTTTTGTGATTTGCTAGTCCTCTCTTTTTGAATGGAAGGTTGCA
TAGATCGCAGTTCACGGTGAGAGATTGTTGTGGTGTCTTTTGAGATGGTT
GTGGTGAGGGCTGAGATAGTGGTAGGATTTTGTCGTTGATGTTGTTATCT
GATTGTTGTTGGTTCGACATATTTCTGGCTTCAGTGGTCAAGATATTAAA
GAAACTCTCTGTTGGCTTAAGCACAGTTTGTTTAATGAGAGATGTTGGTT
TGCAAGCAGGCTTGTGATGAAGATTGTTGTTATTTGGTGAAGACGAAGTT
ACCCTGCTGTACAGAGGGGAGAATCCACATGCTGCTTTTTGATTTTGTT Run BLAST on NCBI protein sequence of TCONS_00000643-protein >TCONS_00000643-protein ID=TCONS_00000643-protein|Name=TCONS_00000643-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
QNQKAACGFSPLYSRVTSSSPNNNNLHHKPACKPTSLIKQTVLKPTESFF
NILTTEARNMSNQQQSDNNINDKILPLSQPSPQPSQKTPQQSLTVNCDLC
NLPFKKRGLANHKRKCASNRQQKHQFSSNNPPNTTTSNPSNNSTDNFQPP
STAQSTKPSTSQPSTTQPTQPSTTQPTQPSTTKPTQPSTTQPTQQPETSE
QNKTENKIWGDHTLSNLHDIINSCYEEIVYFRKNLFLLPSGKAGKEFITE
STKLVNYWNSNSAGLSEVSVKMMMCMPALLLQKPHPRSKAKDHTHALQRR
LILWRDGSFEKLLNESREIQSRLTKNKSKTEQTLTAEFTKHMLRGNIRAA
LRLLENSSTKGVLGLNETIKNTLLNLHPESVVPQPEAIVNKPIIPIDPIV
YEQIDSFLPQETMGKLGKNFELNYQLCLKPCVANHFL Run BLAST on NCBI transcript from alignment at sc0000002:804530..807978 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000643 ID=TCONS_00000643|Name=TCONS_00000643|organism=Clytia hemisphaerica|type=transcript|length=3449bp|location=Sequence derived from alignment at sc0000002:804530..807978 (Clytia hemisphaerica)
AACAAAATCAAAAAGCAGCATGTGGATTCTCCCCTCTGTACAGCAGGGTA
ACTTCGTCTTCACCAAATAACAACAATCTTCATCACAAGCCTGCTTGCAA
ACCAACATCTCTCATTAAACAAACTGTGCTTAAGCCAACAGAGAGTTTCT
TTAATATCTTGACCACTGAAGCCAGAAATATGTCGAACCAACAACAATCA
GATAACAACATCAACGACAAAATCCTACCACTATCTCAGCCCTCACCACA
ACCATCTCAAAAGACACCACAACAATCTCTCACCGTGAACTGCGATCTAT
GCAACCTTCCATTCAAAAAGAGAGGACTAGCAAATCACAAAAGAAAATGT
GCCAGCAACCGTCAACAAAAACACCAATTCTCATCAAACAACCCTCCTAA
CACCACCACCTCTAATCCAAGCAACAACTCTACAGATAATTTTCAGCCAC
CGTCAACAGCCCAATCTACCAAACCATCAACCAGCCAACCATCGACCACC
CAACCTACCCAACCATCAACCACCCAACCTACGCAACCATCAACCACCAA
ACCTACCCAACCATCAACCACCCAACCTACCCAACAACCAGAAACATCCG
AGCAGaacaaaactgaaaataaaatctgGGGAGATCATACCCTATCCAAC
CTACACGATATAATAAACTCATGCTACGAGGAAATTGTTTATTTTCGTAA
AAATCTATTTCTGCTACCATCGGGTAAAGCAGGAAAAGAGTTCATTACCG
AGAGTACGAAACTCGTTAATTATTGGAACTCTAACTCAGCCGGTTTATCT
GAAGTCTCCGTAAAAATGATGATGTGTATGCCTGCCCTCCTCCTCCAAAA
ACCTCACCCTCGATCAAAAGCCAAGGACCACACCCATGCCCTACAACGAC
GTCTAATTCTATGGAGAGATGGAAGTTTTGAGAAATTATTGAATGAATCT
CGAGAGATCCAATCAAGACTAACTAAGAACAAATCGAAAACTGAGCAAAC
CTTAACAGCTGAGTTTACCAAACACATGCTTCGGGGAAATATTCGTGCAG
CCCTAcgtttactggaaaactcatctACCAAAGGCGTTCTAGGATTAAAT
GAAACTATCAAAAACACTTTACTCAACCTTCACCCTGAAAGTGTTGTACC
ACAGCCAGAAGCAATAGTAAATAAACCCATCATTCCAATAGACCCCATAG
TGTATGAACAGATTGACAGCTTCTTGCCTCAAGAAACTATGGGAAAACTG
GGGAAGAATTTCGAACTGAACTACCAACTATGCTTAAAACCGTGTGTCGC
CAATCACTTTCTTTAGATTCACGTGAAAGAGACATTGAAGCTTTCTTGGC
ATGTCGTCTTATACATTTAGATAAAGACCCTGGTGTCCGACCGATAGGGA
TAGGAGAAGTAATTCGTCGCATTTTTGGGAAAGCTTTAATATCAGTAGTG
AAAGAGGACATAATGAAAGCTGCAGGTTCTCTACAGGTCTGTGCCGGACA
ACAGGCTGGATGTGAGGCCTCAGTTCATGCAATGTATTCTATTTTTCTTG
AAGAAGGGTCTGACGGAATCCTTCTTGTTGACGCATCAAATGCCTTTAAC
TCTCTTAATCGATCTGCTTTTCTTCGTAATATTAAGGCACTATGTCCAGC
AATCGCAGCATATGTACATAATTGTTATGCTAGGAATTCACGTTTATTTG
TCGATGGAGGTATTGAGATAACATCAGCGGAAGGAACAACGCAAGGTGAT
CTCCTACCACTCCAACAGCTTCTTCGTGAAGAGGTCGATTCCAACGATGT
AAAGAGTGTTGCTTATGCCGATGACCTAGCAGGAGCCGGTGGCCTCCAAA
ACCTATTGAGATGGTGGCCCGCCAGTAGAAAGACTTGGTCCTATCTTTGG
ATACTACCCCAAGGCATCAAAATCGTGGTTAGTGGTTAGGGACGAGGACT
TTACTGAGGCAGAACGTATTTTTACAGGGACTAATGTAAATATTATTTGC
ACAGGAAGAAAGTACTTGGGAGGAACACTAGGTACACAAGATTTCAAAAC
TGATTATTTCAAGGGACTTGTTGAGAAATGGGTGAAACAAATCGAAACAC
TCAGCGAGATTGCGAAATCACAACCCCAATGCGCCTATAGTTCATTCGTC
GGTGGCTTCATCCACAAATTTACTTACCATTTACGTGTGCTTAAGGACAT
TGATGAGCTGCTCATACCACTAGACGAAGCAATTGACAACCATCTGATAC
CAGCTTTGACAGAAGGTCATCGATGCAGCAGACTTGAAAGGAAGCTTTTA
ACTCTCCCGCAGTCAGACTTGGTGGCCTAGGCTTACCTATCCTATCTGAA
ATTGCCAGTACAGAGTATAAGAACTCTCAAACAGTCAGTGATGAACTCTG
CAAGAACATCATCTCACAAACGACAGAGTTTCCGGGAAACAACACAAAAG
TGAAGTATAAGATCATGAGAGAGAATGAGGCTAGACATCAAAGGTTATTG
GACGAATTAAGAACGGAAATAACACCGGATCAGAGAAAGGCTAACGAACT
TGCTCAGATAAAAGGGGCCTCAAACTGGCTCACAGCAAAACCACTGAAAT
GTGAGAATTTTAATTTAACGAAACAAGAGTTCTTTGATTCCATCTCAATC
CGCTATCGATGGCAACTTAAACATCTCCCCACCAATTGCGCATGTGGTAA
TCGTTTCACAATCGAACATGCACTATCGTGCCCAAAAGGAGGTTTCGTCT
ATAAGAGACACAATGAGATAAGAGACACTCTATCGACACTACTGAGTGAA
GTCAAGAAAGATGTTGCGGTCGAGCCAAGCCTAGAACCCATTACTGGAGA
GGACTTAACACCTGGCACGATCAGAGAGGACGGAGCAAGAGCGGATATCA
GCGCTATGGGGTTCTGGACTAGAGGCCAGAGGGCATTTTTTTATGTTAGG
GTATTCAATGCCTATGCCCAAAGGTACTCTAGGAAGAGCCTGTCTAGCAT
GTTTGAAGCTAACGAAAGGGAAAAAAAGAGACACTATAATGATCGCATCA
TCAGGATTGAAGGAGGCTTTTTTACGCCGCTTGTTTTTACTACCAATGGC
GGAACTGGCAGGGAAGCACAGATTTTCATTCGTTCCCTTGCAGCACTAAT
GGCTGAAAAGAGAGGTGAACTTTTCTCTCTTACTTTGAACTATCTGAGAa
cgaaaatttcttttgcaCTCATTCGTTCTACAGTTCTATGCATAAGGGGA
AGCAGAATCCCAAAGAAAGCTGCCATTAACATCAACGACATTGGCATAAC
CGAAGCTGCAGGTTATGTCTAGAACCCTATTAACCTATTATTTTTCAATG
CTTAGAAGcttgtgtttttttgtttttctaatcTTTACAACAGGAAGTTT
TGGAAAGCTTTAACGGTTTTCACCCCTTTATTTTATGGTGAAAAGTTCC Coding sequence (CDS) from alignment at sc0000002:804530..807978 >TCONS_00000643 ID=TCONS_00000643|Name=TCONS_00000643|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at sc0000002:804530..807978 (Clytia hemisphaerica)
CAAAATCAAAAAGCAGCATGTGGATTCTCCCCTCTGTACAGCAGGGTAAC
TTCGTCTTCACCAAATAACAACAATCTTCATCACAAGCCTGCTTGCAAAC
CAACATCTCTCATTAAACAAACTGTGCTTAAGCCAACAGAGAGTTTCTTT
AATATCTTGACCACTGAAGCCAGAAATATGTCGAACCAACAACAATCAGA
TAACAACATCAACGACAAAATCCTACCACTATCTCAGCCCTCACCACAAC
CATCTCAAAAGACACCACAACAATCTCTCACCGTGAACTGCGATCTATGC
AACCTTCCATTCAAAAAGAGAGGACTAGCAAATCACAAAAGAAAATGTGC
CAGCAACCGTCAACAAAAACACCAATTCTCATCAAACAACCCTCCTAACA
CCACCACCTCTAATCCAAGCAACAACTCTACAGATAATTTTCAGCCACCG
TCAACAGCCCAATCTACCAAACCATCAACCAGCCAACCATCGACCACCCA
ACCTACCCAACCATCAACCACCCAACCTACGCAACCATCAACCACCAAAC
CTACCCAACCATCAACCACCCAACCTACCCAACAACCAGAAACATCCGAG
CAGaacaaaactgaaaataaaatctgGGGAGATCATACCCTATCCAACCT
ACACGATATAATAAACTCATGCTACGAGGAAATTGTTTATTTTCGTAAAA
ATCTATTTCTGCTACCATCGGGTAAAGCAGGAAAAGAGTTCATTACCGAG
AGTACGAAACTCGTTAATTATTGGAACTCTAACTCAGCCGGTTTATCTGA
AGTCTCCGTAAAAATGATGATGTGTATGCCTGCCCTCCTCCTCCAAAAAC
CTCACCCTCGATCAAAAGCCAAGGACCACACCCATGCCCTACAACGACGT
CTAATTCTATGGAGAGATGGAAGTTTTGAGAAATTATTGAATGAATCTCG
AGAGATCCAATCAAGACTAACTAAGAACAAATCGAAAACTGAGCAAACCT
TAACAGCTGAGTTTACCAAACACATGCTTCGGGGAAATATTCGTGCAGCC
CTAcgtttactggaaaactcatctACCAAAGGCGTTCTAGGATTAAATGA
AACTATCAAAAACACTTTACTCAACCTTCACCCTGAAAGTGTTGTACCAC
AGCCAGAAGCAATAGTAAATAAACCCATCATTCCAATAGACCCCATAGTG
TATGAACAGATTGACAGCTTCTTGCCTCAAGAAACTATGGGAAAACTGGG
GAAGAATTTCGAACTGAACTACCAACTATGCTTAAAACCGTGTGTCGCCA
ATCACTTTCTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000643-exon-sc0000002-1491911889:804530..807978 | TCONS_00000643-exon-sc0000002-1491911889:804530..807978 | Clytia hemisphaerica | exon |
| TCONS_00000643-exon-sc0000002-1510915933:804530..807978 | TCONS_00000643-exon-sc0000002-1510915933:804530..807978 | Clytia hemisphaerica | exon |
| TCONS_00000643-exon-sc0000002-1575043694:804530..807978 | TCONS_00000643-exon-sc0000002-1575043694:804530..807978 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:804530..807978 . |
Blast
The following BLAST results are available for this feature:
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