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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000635 ID=TCONS_00000635|Name=TCONS_00000635|organism=Clytia hemisphaerica|type=transcript|length=1509bp
ATGgaatttttattgtaaaaaatggAGTGTACACataatatttttcagtt
ttctttTAGTCAGGAAGTAcgcaaaaatatcaaagtagATGTAACCTTCG
CAATGGACAACAACACTACGTATTCACCGAGACAATCACCAGAAGTAGTT
GGTGTCACAACAAGCTTAATGGTTTTATTAAGCTTATTCACTGTAGTTGG
GAATCTTATGGTTATTTACATCTTCGTCAAACACAAAAACTTACAGATTG
CAAAAAACTATTTCATATTATCTCTGGCAATTGCTGATGTTTTCATTGGT
acattttcaatcaatttttataACGTCTATCTCGCTTTTGGTGGATGGCC
TTTTGGTAATATTTCATGTGATTTATGGCTTTCTATGGATTATTCTTGTT
GTAATGTTTCAACGTTAACTTTACTAGCCATCTCAATAGAACGATTTGTC
GGTGTACATTACACAGCTTTCCACCGCAACCAATTCACAAAGAAACGATT
AAAGCGAACAATTTTCATCATTTGGCTTATATCATTCTTAGTATGGTTTC
CTGCTATTTTTGCTTATCCATACATTCACGGCGAACGAACAGTAAAAGAC
GGACAATGTTATGTACAATTTTTATATGAAAGCCCGAGTATGACTATTGT
TACTGCCTTCATTAATTTTTATGGGCCAATCATTTTCATGGTGATTATTT
ACATATTAATATCAAGAACACTAATCAAGAGATATAAACGGAAATATCAT
CTAAGAGAGAATTCAATACCACCCGAGACAAGCTCTGAACGACGGCCTTC
CAGTTCGCGAGAACGAAAATATTCAGTACGTCCGTCAATCGCTTCAACAA
CTGTAATTTCACCAGAAAGACGACCAACTATCGCAACCATTATTGGTTCT
CCCTCTGAAATGGATAGAATGAGAAAAAGCTATGAATCCATTGTATCTGG
CGATACGAACTCAAATTCTAAAAGGAAAGCTGATAAGCCGAAAACACAAC
GCGAAAAAGACTACTTATCACATAAAAGAGCAATTACTCTGTTATTACTT
ATCATTGGTGCATTTGCTATCACGTGGTTTCCATATAACCTTATGGCGGT
GATCGCACCATTTTGTAGAAAATGCATCCATGCTGATTGGTGGCATTTTG
GTTACATTTTCTGCTACGTTAACTCCCTATTAAACCCATTGTGCTATGCT
TTTGGTAATcgacatttcaaaaaatatttcaaagagaTTTTCGTAGCAAT
CAAGAAAAGGATCTGTTGTCCAAAAGCTGGTTTAGTAACAATAAAACAAC
ATTAgtttgctctttattttgtaacaTACTTTTGGGATTTTTGTTGTACA
TATAGGGTGTATTCACACTGTTGTTTGAAGGTTGCTTGAAAATATTGGAA
TAAAGAATGCACGATCTTCTCTTTTGCACTTATTATTTAACTTTGCACGA
TCGCGTGATCTTGTTTCAAGCAAACTTCAAGCcaaaaaaacaatgatttt
GTGTTGATG Run BLAST on NCBI protein sequence of TCONS_00000635-protein >TCONS_00000635-protein ID=TCONS_00000635-protein|Name=TCONS_00000635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp
MECTHNIFQFSFSQEVRKNIKVDVTFAMDNNTTYSPRQSPEVVGVTTSLM
VLLSLFTVVGNLMVIYIFVKHKNLQIAKNYFILSLAIADVFIGTFSINFY
NVYLAFGGWPFGNISCDLWLSMDYSCCNVSTLTLLAISIERFVGVHYTAF
HRNQFTKKRLKRTIFIIWLISFLVWFPAIFAYPYIHGERTVKDGQCYVQF
LYESPSMTIVTAFINFYGPIIFMVIIYILISRTLIKRYKRKYHLRENSIP
PETSSERRPSSSRERKYSVRPSIASTTVISPERRPTIATIIGSPSEMDRM
RKSYESIVSGDTNSNSKRKADKPKTQREKDYLSHKRAITLLLLIIGAFAI
TWFPYNLMAVIAPFCRKCIHADWWHFGYIFCYVNSLLNPLCYAFGNRHFK
KYFKEIFVAIKKRICCPKAGLVTIKQH Run BLAST on NCBI transcript from alignment at sc0000002:651966..653474 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000635 ID=TCONS_00000635|Name=TCONS_00000635|organism=Clytia hemisphaerica|type=transcript|length=1509bp|location=Sequence derived from alignment at sc0000002:651966..653474 (Clytia hemisphaerica)
CATCAACACaaaatcattgtttttttgGCTTGAAGTTTGCTTGAAACAAG
ATCACGCGATCGTGCAAAGTTAAATAATAAGTGCAAAAGAGAAGATCGTG
CATTCTTTATTCCAATATTTTCAAGCAACCTTCAAACAACAGTGTGAATA
CACCCTATATGTACAACAAAAATCCCAAAAGTAtgttacaaaataaagag
caaacTAATGTTGTTTTATTGTTACTAAACCAGCTTTTGGACAACAGATC
CTTTTCTTGATTGCTACGAAAAtctctttgaaatattttttgaaatgtcg
ATTACCAAAAGCATAGCACAATGGGTTTAATAGGGAGTTAACGTAGCAGA
AAATGTAACCAAAATGCCACCAATCAGCATGGATGCATTTTCTACAAAAT
GGTGCGATCACCGCCATAAGGTTATATGGAAACCACGTGATAGCAAATGC
ACCAATGATAAGTAATAACAGAGTAATTGCTCTTTTATGTGATAAGTAGT
CTTTTTCGCGTTGTGTTTTCGGCTTATCAGCTTTCCTTTTAGAATTTGAG
TTCGTATCGCCAGATACAATGGATTCATAGCTTTTTCTCATTCTATCCAT
TTCAGAGGGAGAACCAATAATGGTTGCGATAGTTGGTCGTCTTTCTGGTG
AAATTACAGTTGTTGAAGCGATTGACGGACGTACTGAATATTTTCGTTCT
CGCGAACTGGAAGGCCGTCGTTCAGAGCTTGTCTCGGGTGGTATTGAATT
CTCTCTTAGATGATATTTCCGTTTATATCTCTTGATTAGTGTTCTTGATA
TTAATATGTAAATAATCACCATGAAAATGATTGGCCCATAAAAATTAATG
AAGGCAGTAACAATAGTCATACTCGGGCTTTCATATAAAAATTGTACATA
ACATTGTCCGTCTTTTACTGTTCGTTCGCCGTGAATGTATGGATAAGCAA
AAATAGCAGGAAACCATACTAAGAATGATATAAGCCAAATGATGAAAATT
GTTCGCTTTAATCGTTTCTTTGTGAATTGGTTGCGGTGGAAAGCTGTGTA
ATGTACACCGACAAATCGTTCTATTGAGATGGCTAGTAAAGTTAACGTTG
AAACATTACAACAAGAATAATCCATAGAAAGCCATAAATCACATGAAATA
TTACCAAAAGGCCATCCACCAAAAGCGAGATAGACGTtataaaaattgat
tgaaaatgtACCAATGAAAACATCAGCAATTGCCAGAGATAATATGAAAT
AGTTTTTTGCAATCTGTAAGTTTTTGTGTTTGACGAAGATGTAAATAACC
ATAAGATTCCCAACTACAGTGAATAAGCTTAATAAAACCATTAAGCTTGT
TGTGACACCAACTACTTCTGGTGATTGTCTCGGTGAATACGTAGTGTTGT
TGTCCATTGCGAAGGTTACATctactttgatatttttgcgTACTTCCTGA
CTAaaagaaaactgaaaaatattatGTGTACACTccattttttacaataa
aaattcCAT Coding sequence (CDS) from alignment at sc0000002:651966..653474 >TCONS_00000635 ID=TCONS_00000635|Name=TCONS_00000635|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at sc0000002:651966..653474 (Clytia hemisphaerica)
cTAATGTTGTTTTATTGTTACTAAACCAGCTTTTGGACAACAGATCCTTT
TCTTGATTGCTACGAAAAtctctttgaaatattttttgaaatgtcgATTA
CCAAAAGCATAGCACAATGGGTTTAATAGGGAGTTAACGTAGCAGAAAAT
GTAACCAAAATGCCACCAATCAGCATGGATGCATTTTCTACAAAATGGTG
CGATCACCGCCATAAGGTTATATGGAAACCACGTGATAGCAAATGCACCA
ATGATAAGTAATAACAGAGTAATTGCTCTTTTATGTGATAAGTAGTCTTT
TTCGCGTTGTGTTTTCGGCTTATCAGCTTTCCTTTTAGAATTTGAGTTCG
TATCGCCAGATACAATGGATTCATAGCTTTTTCTCATTCTATCCATTTCA
GAGGGAGAACCAATAATGGTTGCGATAGTTGGTCGTCTTTCTGGTGAAAT
TACAGTTGTTGAAGCGATTGACGGACGTACTGAATATTTTCGTTCTCGCG
AACTGGAAGGCCGTCGTTCAGAGCTTGTCTCGGGTGGTATTGAATTCTCT
CTTAGATGATATTTCCGTTTATATCTCTTGATTAGTGTTCTTGATATTAA
TATGTAAATAATCACCATGAAAATGATTGGCCCATAAAAATTAATGAAGG
CAGTAACAATAGTCATACTCGGGCTTTCATATAAAAATTGTACATAACAT
TGTCCGTCTTTTACTGTTCGTTCGCCGTGAATGTATGGATAAGCAAAAAT
AGCAGGAAACCATACTAAGAATGATATAAGCCAAATGATGAAAATTGTTC
GCTTTAATCGTTTCTTTGTGAATTGGTTGCGGTGGAAAGCTGTGTAATGT
ACACCGACAAATCGTTCTATTGAGATGGCTAGTAAAGTTAACGTTGAAAC
ATTACAACAAGAATAATCCATAGAAAGCCATAAATCACATGAAATATTAC
CAAAAGGCCATCCACCAAAAGCGAGATAGACGTtataaaaattgattgaa
aatgtACCAATGAAAACATCAGCAATTGCCAGAGATAATATGAAATAGTT
TTTTGCAATCTGTAAGTTTTTGTGTTTGACGAAGATGTAAATAACCATAA
GATTCCCAACTACAGTGAATAAGCTTAATAAAACCATTAAGCTTGTTGTG
ACACCAACTACTTCTGGTGATTGTCTCGGTGAATACGTAGTGTTGTTGTC
CATTGCGAAGGTTACATctactttgatatttttgcgTACTTCCTGACTAa
aagaaaactgaaaaatattatGTGTACACTccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000635-exon-sc0000002-1491911889:651966..653474 | TCONS_00000635-exon-sc0000002-1491911889:651966..653474 | Clytia hemisphaerica | exon |
| TCONS_00000635-exon-sc0000002-1510915933:651966..653474 | TCONS_00000635-exon-sc0000002-1510915933:651966..653474 | Clytia hemisphaerica | exon |
| TCONS_00000635-exon-sc0000002-1575043694:651966..653474 | TCONS_00000635-exon-sc0000002-1575043694:651966..653474 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:651966..653474 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
| GO:0016907 | G-protein coupled acetylcholine receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0005887 | integral component of plasma membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0005887 |
integral component of plasma membrane |
| molecular_function |
GO:0016907 |
G-protein coupled acetylcholine receptor activity |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00000635 vs. Swiss-Prot (Human)
Match: ACM1 (Muscarinic acetylcholine receptor M1 OS=Homo sapiens GN=CHRM1 PE=1 SV=2) HSP 1 Score: 220.32 bits (560), Expect = 5.667e-65 Identity = 138/427 (32.32%), Postives = 202/427 (47.31%), Query Frame = 1
Query: 109 NNTTYSPRQSP---EVVGVTTSLMVLLSLFTVVGNLMVIYIFVKHKNLQIAKNYFILSLAIADVFIGTFSINFYNVYLAFGGWPFGNISCDLWLSMDYSCCNVSTLTLLAISIERFVGVHYTAFHRNQFTKKRLKRTIFIIWLISFLVWFPAIFAYPYIHGERTVKDGQCYVQFLYESPSMTIVTAFINFYGPIIFMVIIYILISRTLIKRYKRKYHLRENXXXXXXXXXXXXXXXXXXKYSVRP----------------------------------SIASTTVISPERRPTIATIIGSPSEMDRMRKSYESIVSGDTNSNSKRKADKPKTQ--REKDYLSHKRAITL---------LLLIIGAFAITWFPYNLMAVIAPFCRKCIHADWWHFGYIFCYVNSLLNPLCYAFGNRHFKKYFKEIFV 1245
N T +P + P +G+TT L LSL TV GNL+V+ F + L+ NYF+LSLA AD+ IGTFS+N Y YL G W G ++CDLWL++DY N S + LL IS +R+ V +R + T +R I + WL+SF++W PAI + Y+ GERTV GQCY+QFL + P +T TA FY P+ M +Y I R R + L+ + P + S + P S+ S+ P I + P ++ S + K + K Q R K+ L+ ++ +L L I+ AF +TW PYN+M +++ FC+ C+ W GY CYVNS +NP+CYA N+ F+ F+ + +
Sbjct: 12 NITVLAPGKGPWQVAFIGITTGL---LSLATVTGNLLVLISFKVNTELKTVNNYFLLSLACADLIIGTFSMNLYTTYLLMGHWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRPLSYRAKRTPRRAALMIGLAWLVSFVLWAPAILFWQYLVGERTVLAGQCYIQFLSQ-PIITFGTAMAAFYLPVTVMCTLYWRIYRETENRARELAALQGSETPGKGGGSSSSSERSQPGAEGSPETPPGRCCRCCRAPRLLQAYSWKEEEEEDEGSMESLTSSEGEEPGSEVVIKMPMVDPEAQAPTKQPPRSSPNTVKRPTKKGRDRAGKGQKPRGKEQLAKRKTFSLVKEKKAARTLSAILLAFILTWTPYNIMVLVSTFCKDCVPETLWELGYWLCYVNSTINPMCYALCNKAFRDTFRLLLL 434
The following BLAST results are available for this feature:
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