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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000609 ID=TCONS_00000609|Name=TCONS_00000609|organism=Clytia hemisphaerica|type=transcript|length=3086bpRun BLAST on NCBI protein sequence of TCONS_00000609-protein >TCONS_00000609-protein ID=TCONS_00000609-protein|Name=TCONS_00000609-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp MWRTTKQFINNYVYKLKLNKIERSNVLLLYTIAIILINTNTILGIQDNHVRun BLAST on NCBI transcript from alignment at sc0000002:1497124..1509344- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000609 ID=TCONS_00000609|Name=TCONS_00000609|organism=Clytia hemisphaerica|type=transcript|length=12221bp|location=Sequence derived from alignment at sc0000002:1497124..1509344- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:1497124..1509344- >TCONS_00000609 ID=TCONS_00000609|Name=TCONS_00000609|organism=Clytia hemisphaerica|type=CDS|length=16710bp|location=Sequence derived from alignment at sc0000002:1497124..1509344- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000609 vs. Swiss-Prot (Human)
Match: GBRB3 (Gamma-aminobutyric acid receptor subunit beta-3 OS=Homo sapiens GN=GABRB3 PE=1 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 1.391e-78 Identity = 168/454 (37.00%), Postives = 240/454 (52.86%), Query Frame = 2
Query: 524 ISALLQKLLKGYDKRLRPLMDFQ-EPVMVTVGFWILSIDSINVIDMDYQIDFFFRQSWTDERLKHS-YPQTLTLSNSMLDKLWVPDTYFENSKNSQFHSVTVPNKMLKIKPDGTVLYNARISVRASCPMDLRMFPMDSQECNLNIESYGYSVYDIRFQWEEDKQKRLSIGTKVRTLPQYNLTQFDTANSTEAYVVGNYSRLTAIFVLQRRTGYFFLHLYAPCALIVMISWISFCIPKDSTAARVALGITSVXXXXXXXXXXXXAMPKVSYIKAVDWYLIVSFLFVFAVLIEYTLVLYLTDXXXXXXXXXXXXXXXXRPPNMDKQFVGANGHVI-DRNNHHELRSRAYQNN-----NYKENHYDCSDGEFQTKPLIVVLEEKNLXXXXXXXXXXXXXXXXXXXSAA-LQSHTGKFLCEFRVDVID--------EYSRMIFPLAFIIFNIVYWLLF 1834
+ + KLLKGYD RLRP DF PV V + I SID ++ ++MDY + +F+Q W D+RL +S P LTL N + D+LWVPDTYF N K S H VTV N+M+++ PDGTVLY RI+ A+C MDLR +P+D Q C L IESYGY+ DI F W + G + LPQ+++ + + + G Y RL+ F L+R GYF L Y P LI ++SW+SF I D++AARVALGIT+VLT+TTI L +PK+ Y+KA+D YL+ F+FVF L+EY V Y+ R P K+ DR+ R A+ N + S G T+ + + ++ +Q+ D S ++H + + ++ + D +SR++FP F +FN+VYWL +
Sbjct: 37 VKETVDKLLKGYDIRLRP--DFGGPPVCVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAYSGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKA--VTGVERIELPQFSIVEHRLVSRNVVFATGAYPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYI---------------FFGRGPQRQKKLAEKTAKAKNDRSKSESNRVDAHGNILLTSLEVHNEMNEVSGGIGDTRNSAISFDNSGIQYRKQSMPREGHGRFLGDRSLPHKKTHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNLVYWLYY 471 The following BLAST results are available for this feature:
BLAST of TCONS_00000609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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