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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000567 ID=TCONS_00000567|Name=TCONS_00000567|organism=Clytia hemisphaerica|type=transcript|length=4359bpRun BLAST on NCBI protein sequence of TCONS_00000567-protein >TCONS_00000567-protein ID=TCONS_00000567-protein|Name=TCONS_00000567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=973bp MFSIKMTHRCSCILFCLYLMITSVKSVEKVLTYKVNTKTDSIWEYDDIDARun BLAST on NCBI transcript from alignment at sc0000002:736495..748372- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000567 ID=TCONS_00000567|Name=TCONS_00000567|organism=Clytia hemisphaerica|type=transcript|length=11878bp|location=Sequence derived from alignment at sc0000002:736495..748372- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:736495..748372- >TCONS_00000567 ID=TCONS_00000567|Name=TCONS_00000567|organism=Clytia hemisphaerica|type=CDS|length=40908bp|location=Sequence derived from alignment at sc0000002:736495..748372- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000567 vs. Swiss-Prot (Human)
Match: EPHA7 (Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 PE=1 SV=3) HSP 1 Score: 411.764 bits (1057), Expect = 7.633e-123 Identity = 188/386 (48.70%), Postives = 271/386 (70.21%), Query Frame = 3
Query: 1701 FKTSRLYVDPTTYSHVDEAVEEFALELDRSCLTMDQLIGGGEFANVFKGILSTES-RNSDVAIKVLKSGANRSDRDDFLSEAAILGQFSDPNVVSIEGVVLKDYPSLIVLEYMANGSLDKYLVKNDSQFSVAKLLGMARGVASGMKYLSDLGFIHRDLAARNVLVNSEDCCKIADFGMSRELKTD--DTYDTKGGKIPIKWTAPEAIEYKKFTTASDVWSYGIVCWEIFSYGERPYWEWSNYEVMERLSTGYRLPPPMECPKGIHDLMLQCWHKDRLKRPRFSNILQKVEEWLKNPDRLTDIASVITK-----RDENL-DYSVLDDLASWLEAINMKQYLKMFTESGYMTPKDILYLTNEDLESLGVGLIGHRKKLLKAIKNTKNQ 2831
F ++ Y+DP TY + AV +FA ELD SC+ ++++IG GEF V G L R+ VAIK LK G R DFL EA+I+GQF PNVV +EGVV + P +IV+E+M NG+LD +L K+D QF+V +L+GM RG+A+GM+YL+D+G++HRDLAARN+LVNS CK++DFG+SR ++ D Y T GGKIP++WTAPEAI+Y+KFT+ASDVWSYGIV WE+ SYGERPYW+ SN +V++ + GYRLP PM+CP G+H LML CW K+R +RP+F I+ +++ ++NP+ L ++ D+N D++ + WL+AI M++Y FT +GY + + + +T ED+ SLG+ L+GH+KK++ +I+ + Q
Sbjct: 602 FPGTKTYIDPETYEDPNRAVHQFAKELDASCIKIERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPAPMDCPAGLHQLMLDCWQKERAERPKFEQIVGILDKMIRNPNSLKTPLGTCSRPISPLLDQNTPDFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQ 987 The following BLAST results are available for this feature:
BLAST of TCONS_00000567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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