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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000514 ID=TCONS_00000514|Name=TCONS_00000514|organism=Clytia hemisphaerica|type=transcript|length=1304bp TCTAAAAAAAAGactcacaattttttcaaaacattccaaTATTTTTGAGT ATAAGTTAGAGTTAGTCAAATTTTGCTAGACTAGACAGTAAGACAGGTCT GAATTGTACATGGTGGTAATGAAGTctttgatattttcatattttgattg atCCACTTGTGtaatttcttttgtctttttagaaaaaaaagtgtaaaatt atcaaaagtgCAAAATGGTTCTTCTTGATAATGATACGtttttgactcAA CTGACTTTACTGTTCAACAAAACCAGAAGTATTGGAACTGTTTTTGTTAC AATGAAGCAATaccACGGAGAGACAAAACCAAAACCTCGAAATCTCAAAT CAACAGACCCCAACCCACATGCAACTGGTGAACCAAGGTGTTTATTTAGA GCTACCAATGGCAAGAAGAAATTGAGCACCGTTGTGATGCATAAAGATGT TAATAAATTTCAAGTAGCATACGCATCTCTATTGAAAACGAATATCGACA GTCTCAAGAAAAGAGACAAGAAATCCAAAAAGTCCAAGAAAACGAAAGCA ACACAGTAGAAtcgtaaatttaaaaaatcgaaataacataaaaattatat atatagtCCATCATTTGTCATCATTTTTGTGCGGGATTGAGATTCATGGT GTTCGATTTTCATGGTGGGATCGTCAAATGGACAAGTAAAAGTTACTTTC AAGGTACTGACTATGAATTTGGATTCTGTGCATGCATGAAAATGGACTTG AAATGATTTATCAAATGAACTCATGTATTATGGACAATTTTTTGAGTGAT GATGTTAAAATTGATGTTTGATAAATAGAATTTATTTATTGGTTGCTTTC AAGAGACTTGGGGGTCAATGCTAAATAATACTCGAATTTATAACCCTTTG ACGTGTTTGAAAGTGAATTTTTAGTTCAAAAgcttattcaaaatatttta aattcgGTCTTTTTATCAGATCATTCtgaatatttcttatattttcttGG GTTTTTTTTGAAGGCGACTATAATTCTAGAACTTCACAAATGAATCAACT GTTAGAGctgtattttttatttccaCTACATATATGATAACAAACATCAG CCCTGGAAATTAAGTTTTGTGTCctttggtttttttattttgggtAGAAA TTGTAATCGAGTTTATTAGTGAAATTTAGAATTGCAGTATATATAATAAA ACCATGATTTGGTAAGAATATATTacaataatcttttttttttttaataa tttttcctcCTTATTAATCTTAAactaaaaaatacaaatgaaatTCTATC AAGa Run BLAST on NCBI protein sequence of TCONS_00000514-protein >TCONS_00000514-protein ID=TCONS_00000514-protein|Name=TCONS_00000514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MVLLDNDTFLTQLTLLFNKTRSIGTVFVTMKQYHGETKPKPRNLKSTDPN PHATGEPRCLFRATNGKKKLSTVVMHKDVNKFQVAYASLLKTNIDSLKKR DKKSKKSKKTKATQ Run BLAST on NCBI transcript from alignment at sc0000002:217071..222006- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000514 ID=TCONS_00000514|Name=TCONS_00000514|organism=Clytia hemisphaerica|type=transcript|length=4936bp|location=Sequence derived from alignment at sc0000002:217071..222006- (Clytia hemisphaerica) TCTAAAAAAAAGACTCACAATTTTTTCAAAACATTCCAATATTTTTGAGT
ATAAGTTAGAGTTAGTCAAATTTTGCTAGACTAGACAGTAAGACAGGTCT
GAATTGTACATGGTGGTAATGAAGTCTTTGATATTTTCATATTTTGATTG
ATCCACTTGTGTAATTTCTTTTGTCTTTTTAGAAAAAAAAGTGTAAAATT
ATCAAAAGTGCAAAATGGTTCTTCTTGATAATGATACGGTATGATTTCTC
AGTTGGTTCTTGTGCAGGAACACTTATGTAAAAATAAGACCTTCAACTAA
ATGGATGGTCAAGGGGGTGGATAATTCCACTAGAGACAACAGGGGGGGGT
CAGGATCCAAATAACCCCAGGGCCGGGGGTGGTGTCAATTTTTTTTTTCA
AATTTTAAAAAGTCAAGTTGGTATCGATACCAAAATGAGGGGGTGGGTCC
CCCTTTTTTTGAAAATTAGGGAATCTTTAAGTTGGTATTGATACCAAAAT
GAGGGGGTGGGTCCCCCTTTTTTTAATTTTTTCTGAATTTGAAATTGGTA
TCTGACTTAAAATGTTGTATAATGTAAGTATAAAAACTTATTTGAATCAT
TTACATTATTATACTCTGATTCCATATAAAAGCATTCTTCATTCTACAAT
TAAAATTAAATTTTTATTTAACTTTCTCTGCTCTCAATCCTTTCAATCAA
CCAAAATTCATTCAAAACTAGAGTTGAACAAACTGAATCAAGTCTTAGCA
GATTATTAGAACTTTTTTAGTCGTGATAGAATTTTTCTGTACATAACGTT
CATCATAATATAGGCTATGTTACAATGCTAATACAATGAGTTTTTTATCT
AGTCTAGTTTATCAACTAGTTTTATGAATTTGATACATTTTGCCAATTTA
GTTCAAGAAACTTAATTTACGTTGTGTTAGAATGAGAAAAACTTGTTTTC
ATTTTCAGGAGTCCAAAGTACATAATATAAGTGACATAGCGTCAGCCTGG
GTTAAGGTCCCAGGCAAAAATTAGGTGTTAAGTTTTAAGTCCCCCCAAAG
ATTTATGAATTTTTTGTTAGCCCCCAGGACTTTTAACCCTAGACACTTTC
AAAAAAGTTGATCCAGTAAAAAAGGTTTTTTCCAAAATGTGAATTGTGTT
CAGTCCTAAGTTTAAGATAAAATATTTTGCACGCTTTCTCTAGAAATATT
GCACGGCAGGCGAAAATTTTTCAGATTCATGAGCTTCAATTTGAGTAAAT
GAAGCCAACTACTAAGCTGAATTATTTTAGCCCCACGTTAAGTGATGAAA
TTTTAGCTCCCCCCAAGTACATAGGTCCCCCCAAAAAAGTGGTGTACTTC
CAGCCCCCTCCTTTTTTGGGAAAGATTTAAGGTGTAACCCCCCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTAGTGTTTCCCCCCCCCCCCCCCAACC
AGCAGGGGGGGCTGACACTATGAGTGATTAATAAGAGGAATGTTCTTTGA
ATTAAAACATCCACATATTTAGTGTCCTTTGTTTGCAGTATCCTATGCAT
TTAACCTCTTGCATTTTTACTGATTGCCAATTTAGGAGGGTGGGTCCCCC
TTTTTTTAGAAAATTGGGTTTTTCAAGTTGGTATTGATACCAATTTAGGG
GGTGGTGGTGTCTACTACTTTCAAATCTTGAAAAGTCAGGTTTTTGGGCC
CTGGGTTGGTATCCTGGACCCTGACCCCCCCCTGGAGACAAGGATGTTTT
CATCTCCTTTTATAGTCAAGGCCAAAATATTGAAAGTTATTTCATTATAA
TTTTTAAACTAAATTTTTTTTTTAGTTTTTGACTCAACTGACTTTACTGT
TCAACAAAACCAGAAGTATTGGAACTGTTTTTGTTACAATGAAGCAATGT
AAGTTTTTTTATACCCTCAATCGTGGTCGCAAATAGAAAAGGGGATAGAC
TCCCTCACTCTGGCTTCCTGACAGCCACCAAATGATTATACTTATACTTA
GTTACTTATACCTTTACCTATACCATCAATTGGAGTATCTTGTTTAGGGG
TATATAAGGAGTGTCTCCTTAAAGTATTCCTTTGATCTTTATTTTGCTAT
ATTTTTTACCTTTAAATTTGGATGTCATTCTTGTTATTTGCATCAAATTT
TCAAAACATAAAAATTGGTAGAATCTTGATTTCCTGTTTTAATTCTAGCT
TTTTCTAATCTTTATGCTGTTCTGGACACAGTTTTTGGTTAATTTTGAAA
TTAATTGGGTGTTTGTGAATTTTTGCCTTTTTCAAAAGCTAAAATCTACC
AAAATTACAAGAGATTTTCTGTGATAACTTCTTTCTATCAGGGTCAAATT
TTAGCTTAAAATGTTCAGGCTCTATCATGAATTTTCAATTTTAATACCGG
GTGCGCCACAAAAAAGTTTCTCTCTTTGAAACTAATTTTCTCGAAATCTA
AAAAATTTAAAAGAACCATTCCTATTTCATTGGAAAGAAGAAAGATAAAC
TTAAATTTTGTTGGGTCATTTATTAAATTTGATTCATTAGATCAAAAGTT
ATACTCAATTGAATGAAAAAGTTACTTTCAGAAAGTGCTCGAAAACGTTG
AAAATCGACCTATCAAATTTTTATTTTAAAATTGGCAATCACAATAGCCT
TTGCATGATTAAGAGCATTTTTCAGTAACTAAACACATAAATTTTGAAAC
TGAAGGGTTGAAAGGGTTTAAAATATTCATCAAAATCACTTTAATTTACT
TTTACCGAAATTTTCCTCCGATTTTTGGTTCTAGACTTGATAAAGTCTAT
GTAAGGCTGGATCTACCTCGAAACCCGTATTTGATGTACTTTTATGAATT
TTATCAGATTTTTTGGCCTTTTTGGACGAATTCTCTTCATTTCATTGAAA
TTCAACCTTCCTTTATACAAAAAAGGTCATTTAGACAGCTAATTATCATT
TTTAATAACAGAAACGAAAATACTGATGTATCATGTAATTATGCTTCTGT
TTGATTTGATAGGTCGATTTTTAACGTTTTTGAGAACTTTTAGAAAGAAG
CTTTTTTATTCAATTGATCATAACTTTTGATCTAATGAATCGAATTTAAT
AAATGACCCATCAAAACTTAAGTTTACCTTTCTCCTTGCCAATGAAATAG
GAATGGTTCTTTTAAAATTTTTAGATTTCAAGAAAATTAGTTTCAAAGAG
AGAAACTTTTTTGTGGTGCACCCGGTAGAATGGAAATTTATTTGTATGAT
CCAATGTAATTTTTTAAGAAATTTTTTTCTTTAGACCACGGAGAGACAAA
ACCAAAACCTCGAAATCTCAAATCAACAGACCCCAACCCACATGCAACTG
GTGAACCAAGGTGTTTATTTAGAGCTACCAATGGCAAGAAGAAATTGAGC
ACCGTTGTAAGTATAACGCTTGAGACAATAATCATGAGAAATTTTTGAAT
GCCATCAATGATAATCAATGATAATCAATAAAGTTTTTACTCAAACCTCG
TGAGTCAAGAGACAAGATTTTTTCATCATACTATTAGAAACATAATATCC
AAAAAAACCTTGATCGACCTTCTGTTTTTTTCTGGAATGAGTAACTAAGA
TAGTCACTCGGATTCACTTCAGAATTTTCCAGTGTTTTTGATTGGGAAAA
TGATGATGTTTTTATTACACAAGATTTTAAACATCTATTAAATGAGTTTC
CAATTTTTTTTCAATGGATTCTACTTGTATGTTCTGGATTGATTATTTTC
AGTCGAAAATAATGCATTGAAGAATAAAAAGATATTTTCTTTTATTCCAG
GTGATGCATAAAGATGTTAATAAATTTCAAGTAGTAAGTATATGATTTTT
GATTTCGCTAGGAAGTGACGGCATTATATAATTCCATTTGATTTTCAAAG
AAGGGAGCAAATACATATTTTGAGCTTTTTGTTGTTAATTTGTAGTATCA
AACTTTTTCCTTGCCTGTTCTTGAATTGTAGATTTCCCATTTTCTTTCGT
ACTTTATTGTCATTTTACTAATCAAATATATTGTTGTTCAAATTTCAGGC
ATACGCATCTCTATTGAAAACGAATATCGACAGTCTCAAGAAAAGAGACA
AGAAATCCAAAAAGTCCAAGAAAACGAAAGCAACACAGTAGAATCGTAAA
TTTAAAAAATCGAAATAACATAAAAATTATATATATAGTCCATCATTTGT
CATCATTTTTGTGCGGGATTGAGATTCATGGTGTTCGATTTTCATGGTGG
GATCGTCAAATGGACAAGTAAAAGTTACTTTCAAGGTACTGACTATGAAT
TTGGATTCTGTGCATGCATGAAAATGGACTTGAAATGATTTATCAAATGA
ACTCATGTATTATGGACAATTTTTTGAGTGATGATGTTAAAATTGATGTT
TGATAAATAGAATTTATTTATTGGTTGCTTTCAAGAGACTTGGGGGTCAA
TGCTAAATAATACTCGAATTTATAACCCTTTGACGTGTTTGAAAGTGAAT
TTTTAGTTCAAAAGCTTATTCAAAATATTTTAAATTCGGTCTTTTTATCA
GATCATTCTGAATATTTCTTATATTTTCTTGGGTTTTTTTTGAAGGCGAC
TATAATTCTAGAACTTCACAAATGAATCAACTGTTAGAGCTGTATTTTTT
ATTTCCACTACATATATGATAACAAACATCAGCCCTGGAAATTAAGTTTT
GTGTCCTTTGGTTTTTTTATTTTGGGTAGAAATTGTAATCGAGTTTATTA
GTGAAATTTAGAATTGCAGTATATATAATAAAACCATGATTTGGTAAGAA
TATATTACAATAATCTTTTTTTTTTTTAATAATTTTTCCTCCTTATTAAT
CTTAAACTAAAAAATACAAATGAAATTCTATCAAGA Coding sequence (CDS) from alignment at sc0000002:217071..222006- >TCONS_00000514 ID=TCONS_00000514|Name=TCONS_00000514|organism=Clytia hemisphaerica|type=CDS|length=1725bp|location=Sequence derived from alignment at sc0000002:217071..222006- (Clytia hemisphaerica) GCATACGCATCTCTATTGAAAACGAATATCGACAGTCTCAAGAAAAGAGA CAAGAAATCCAAAAAGTCCAAGAAAACGAAAGCAACACAGTAGGTGATGC ATAAAGATGTTAATAAATTTCAAGTAACCACGGAGAGACAAAACCAAAAC CTCGAAATCTCAAATCAACAGACCCCAACCCACATGCAACTGGTGAACCA AGGTGTTTATTTAGAGCTACCAATGGCAAGAAGAAATTGAGCACCGTTTT TTTGACTCAACTGACTTTACTGTTCAACAAAACCAGAAGTATTGGAACTG TTTTTGTTACAATGAAGCAATATGGTTCTTCTTGATAATGATACGGCATA CGCATCTCTATTGAAAACGAATATCGACAGTCTCAAGAAAAGAGACAAGA AATCCAAAAAGTCCAAGAAAACGAAAGCAACACAGTAGGTGATGCATAAA GATGTTAATAAATTTCAAGTAACCACGGAGAGACAAAACCAAAACCTCGA AATCTCAAATCAACAGACCCCAACCCACATGCAACTGGTGAACCAAGGTG TTTATTTAGAGCTACCAATGGCAAGAAGAAATTGAGCACCGTTTTTTTGA CTCAACTGACTTTACTGTTCAACAAAACCAGAAGTATTGGAACTGTTTTT GTTACAATGAAGCAATATGGTTCTTCTTGATAATGATACGGCATACGCAT CTCTATTGAAAACGAATATCGACAGTCTCAAGAAAAGAGACAAGAAATCC AAAAAGTCCAAGAAAACGAAAGCAACACAGTAGGTGATGCATAAAGATGT TAATAAATTTCAAGTAACCACGGAGAGACAAAACCAAAACCTCGAAATCT CAAATCAACAGACCCCAACCCACATGCAACTGGTGAACCAAGGTGTTTAT TTAGAGCTACCAATGGCAAGAAGAAATTGAGCACCGTTTTTTTGACTCAA CTGACTTTACTGTTCAACAAAACCAGAAGTATTGGAACTGTTTTTGTTAC AATGAAGCAATATGGTTCTTCTTGATAATGATACGGCATACGCATCTCTA TTGAAAACGAATATCGACAGTCTCAAGAAAAGAGACAAGAAATCCAAAAA GTCCAAGAAAACGAAAGCAACACAGTAGGTGATGCATAAAGATGTTAATA AATTTCAAGTAACCACGGAGAGACAAAACCAAAACCTCGAAATCTCAAAT CAACAGACCCCAACCCACATGCAACTGGTGAACCAAGGTGTTTATTTAGA GCTACCAATGGCAAGAAGAAATTGAGCACCGTTTTTTTGACTCAACTGAC TTTACTGTTCAACAAAACCAGAAGTATTGGAACTGTTTTTGTTACAATGA AGCAATATGGTTCTTCTTGATAATGATACGGCATACGCATCTCTATTGAA AACGAATATCGACAGTCTCAAGAAAAGAGACAAGAAATCCAAAAAGTCCA AGAAAACGAAAGCAACACAGTAGGTGATGCATAAAGATGTTAATAAATTT CAAGTAACCACGGAGAGACAAAACCAAAACCTCGAAATCTCAAATCAACA GACCCCAACCCACATGCAACTGGTGAACCAAGGTGTTTATTTAGAGCTAC CAATGGCAAGAAGAAATTGAGCACCGTTTTTTTGACTCAACTGACTTTAC TGTTCAACAAAACCAGAAGTATTGGAACTGTTTTTGTTACAATGAAGCAA TATGGTTCTTCTTGATAATGATACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000514-exon-sc0000002-1575043694:221769..222006 | TCONS_00000514-exon-sc0000002-1575043694:221769..222006 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1575043694:220059..220131 | TCONS_00000514-exon-sc0000002-1575043694:220059..220131 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1575043694:218551..218672 | TCONS_00000514-exon-sc0000002-1575043694:218551..218672 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1575043694:218124..218156 | TCONS_00000514-exon-sc0000002-1575043694:218124..218156 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1575043694:217071..217908 | TCONS_00000514-exon-sc0000002-1575043694:217071..217908 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1510915933:221769..222006 | TCONS_00000514-exon-sc0000002-1510915933:221769..222006 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1510915933:220059..220131 | TCONS_00000514-exon-sc0000002-1510915933:220059..220131 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1510915933:218551..218672 | TCONS_00000514-exon-sc0000002-1510915933:218551..218672 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1510915933:218124..218156 | TCONS_00000514-exon-sc0000002-1510915933:218124..218156 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1510915933:217071..217908 | TCONS_00000514-exon-sc0000002-1510915933:217071..217908 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1491911889:221769..222006 | TCONS_00000514-exon-sc0000002-1491911889:221769..222006 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1491911889:220059..220131 | TCONS_00000514-exon-sc0000002-1491911889:220059..220131 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1491911889:218551..218672 | TCONS_00000514-exon-sc0000002-1491911889:218551..218672 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1491911889:218124..218156 | TCONS_00000514-exon-sc0000002-1491911889:218124..218156 | Clytia hemisphaerica | exon |
TCONS_00000514-exon-sc0000002-1491911889:217071..217908 | TCONS_00000514-exon-sc0000002-1491911889:217071..217908 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000002 | supercontig | sc0000002:217071..222006 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR003210 | Signal_recog_particle_SRP14 |
IPR009018 | Signal_recog_particle_SRP9/14 |
Vocabulary: Cellular Component
Term | Definition |
GO:0005786 | signal recognition particle, endoplasmic reticulum targeting |
GO:0048500 | signal recognition particle |
Vocabulary: Molecular Function
Term | Definition |
GO:0030942 | endoplasmic reticulum signal peptide binding |
GO:0008312 | 7S RNA binding |
Vocabulary: Biological Process
Term | Definition |
GO:0006614 | SRP-dependent cotranslational protein targeting to membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006614 |
SRP-dependent cotranslational protein targeting to membrane |
cellular_component |
GO:0048500 |
signal recognition particle |
cellular_component |
GO:0005786 |
signal recognition particle, endoplasmic reticulum targeting |
molecular_function |
GO:0008312 |
7S RNA binding |
molecular_function |
GO:0030942 |
endoplasmic reticulum signal peptide binding |
Blast
BLAST of TCONS_00000514 vs. Swiss-Prot (Human)
Match: SRP14 (Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 1.974e-25 Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 2
Query: 215 MVLLDNDTFLTQLTLLFNKTRSIGTVFVTMKQYHGETKPKPRNLKSTDPNPHATGEPRCLFRATNGKKKLSTVVMHKDVNKFQVAYASLLKTNID 499
MVLL+++ FLT+LT LF K R+ G+V++T+K+Y G TKP P+ P + +CL RAT+GKKK+STVV K+VNKFQ+AY++LL+ N+D
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEP---ADNKCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMD 92
The following BLAST results are available for this feature:
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