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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000488 ID=TCONS_00000488|Name=TCONS_00000488|organism=Clytia hemisphaerica|type=transcript|length=2265bpRun BLAST on NCBI protein sequence of TCONS_00000488-protein >TCONS_00000488-protein ID=TCONS_00000488-protein|Name=TCONS_00000488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp MDLPDTHNLTSIIGQIDTWDEEGHLTQLLLSILSIGVTISPECWLKFPIMRun BLAST on NCBI transcript from alignment at sc0000002:1524677..1533239+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000488 ID=TCONS_00000488|Name=TCONS_00000488|organism=Clytia hemisphaerica|type=transcript|length=8563bp|location=Sequence derived from alignment at sc0000002:1524677..1533239+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:1524677..1533239+ >TCONS_00000488 ID=TCONS_00000488|Name=TCONS_00000488|organism=Clytia hemisphaerica|type=CDS|length=13959bp|location=Sequence derived from alignment at sc0000002:1524677..1533239+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000488 vs. Swiss-Prot (Human)
Match: GLRA3 (Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=1 SV=2) HSP 1 Score: 192.2 bits (487), Expect = 3.660e-53 Identity = 125/428 (29.21%), Postives = 220/428 (51.40%), Query Frame = 3
Query: 366 FVLQKLRRSAQYEPNLRPNF--PKISETVNVTIQLVTIENLDLSHSSFKLDFLLRQEWNDHRLRHHH---------PAVLDGSNLRMGVWVPDSYFVQAKRGVFSRVAHDGQTIKVKSNGDVSHGARITLEVSCPIDLRNFPMDIQHCNLDMESYAYSTEEITYNWSPHEVIMKNIKETSKSLSQYTLEPIKTGK-GSSEYVLGNWSKLQIEFKFVRNSIIFIPAMYFPCAMVVFITWITFLMDSAQYPARTYLCVTSLLTIVTLQTAMNASLPKVSYVKAIDKYIVGCILFVAGAFLEYAVVLLINIKKNSVLMENSSLVSNNHDNIFNNFSYALQPXXXXXXXXXXXXXXXXXITFLRSRLTSPKEFHDDQTSSVNDQ--QIVLTKFGAIFHFYLSDAWPKKLDVISRVFFPSLFLTFNLFYWITH 1607
F+ + + R++ Y+ +RPNF P ++ T N+ I + ++ + ++++ LRQ+WND RL + P++LD +W PD +F K F V D + +++ NG+V + R+TL +SCP+DL+NFPMD+Q C + +ES+ Y+ ++ + W + + E +L Q+ L+ K + + Y G ++ +++ F R ++ MY P ++V ++W++F ++ PAR L +T++LT+ T + ASLPKVSYVKAID ++ C+LFV A LEYA V N V ++ L+ ++AL+ S + ++R + +F + + D T + Q++ + ++ A KK+D ISR FP FL FN+FYW+ +
Sbjct: 46 FLDKLMGRTSGYDARIRPNFKGPPVNVTCNIFIN--SFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDPSMLDS------IWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPV--QVAE-GLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAV-------NFVSRQHKELLRFRRKRKNKTEAFALE--KFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKGPNHPVQVMPKSPDEMRKVFIDRA--KKIDTISRACFPLAFLIFNIFYWVIY 451 The following BLAST results are available for this feature:
BLAST of TCONS_00000488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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