Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00000488-protein ID=TCONS_00000488-protein|Name=TCONS_00000488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
Term Definition
GO:0016021 integral component of membrane
Vocabulary: Biological Process
Term Definition
GO:0006811 ion transport
Vocabulary: Molecular Function
Term Definition
GO:0005216 ion channel activity GO:0005230 extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0006811 ion transport
cellular_component
GO:0016021 integral component of membrane
molecular_function
GO:0005230 extracellular ligand-gated ion channel activity
molecular_function
GO:0005216 ion channel activity
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 450 500 Score = 35.19 Score = 33.18 Score = 52.82 Score = 31.14 Score = 40.87 Score = 44.13 Score = 49.18 Expect = 2.5E-32 / Score = 110.9 Expect = 2.9E-20 / Score = 73.3 Score = Expect = 2.8E-34 / Score = 118.4 Expect = 1.1E-39 / Score = 135.7 Score = Score = Sequence PR00252 PR00253 G3DSA:1.20.58.390 PF02932 SSF90112 PF02931 G3DSA:2.70.170.10 SSF63712 PS00236
IPR Term IPR Description Source Source Term Source Description Alignment
IPR006201 Neurotransmitter-gated ion-channel PRINTS PR00252 NRIONCHANNEL coord: 220..234 IPR006028 Gamma-aminobutyric acid A receptor/Glycine receptor alpha PRINTS PR00253 GABAARECEPTR coord: 491..511 None No IPR available GENE3D 1.20.58.390 coord: 306..514 IPR006029 Neurotransmitter-gated ion-channel transmembrane domain PFAM PF02932 Neur_chan_memb coord: 311..431 IPR006029 Neurotransmitter-gated ion-channel transmembrane domain SUPERFAMILY 90112 Neurotransmitter-gated ion-channel transmembrane pore coord: 307..512 IPR006202 Neurotransmitter-gated ion-channel ligand-binding domain PFAM PF02931 Neur_chan_LBD coord: 100..300 IPR006202 Neurotransmitter-gated ion-channel ligand-binding domain GENE3D 2.70.170.10 coord: 98..303 IPR006202 Neurotransmitter-gated ion-channel ligand-binding domain SUPERFAMILY 63712 Nicotinic receptor ligand binding domain-like coord: 105..303 IPR018000 Neurotransmitter-gated ion-channel, conserved site PROSITE PS00236 NEUROTR_ION_CHANNEL coord: 220..234
Blast
BLAST of TCONS_00000488-protein vs. Swiss-Prot (Human)
Match:
GLRA2 (Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=1 SV=1)
HSP 1 Score: 201.83 bits (512), Expect = 4.512e-59
Identity = 128/429 (29.84%), Postives = 216/429 (50.35%), Query Frame = 0
Query: 98 FVLQKLRRSAQYEPNLRPNF--PKISETVNVTIQLVTIENLDLSHSSFKLDFLLRQEWNDHRLRHHH---------PAVLDGSNLRMGVWVPDSYFVQAKRGVFSRVAHDGQTIKVKSNGDVSHGARITLEVSCPIDLRNFPMDIQHCNLDMESYAYSTEEITYNW---SPHEVIMKNIKETSKSLSQYTL-EPIKTGKGSSEYVLGNWSKLQIEFKFVRNSIIFIPAMYFPCAMVVFITWITFLMDSAQYPARTYLCVTSLLTIVTLQTAMNASLPKVSYVKAIDKYIVGCILFVAGAFLEYAVVLLINIKKNSVLMENSSLVSNNHDNIFNNFSYALQPRSEKSKSSLKKKLRRRKITFLRSRLTSPKEFHDDQTSSVNDQQIVLTKFGAIFHFYLSDAWPKKLDVISRVFFPSLFLTFNLFYWITH 511
F+ + + R++ Y+ +RPNF P ++ T N+ I + ++ + ++++ LRQ+WND RL + P++LD +W PD +F K F V D + +++ NG V + R+TL +SCP+DL+NFPMD+Q C + +ES+ Y+ ++ + W P +V +L Q+ L E + G + Y G ++ ++++F R ++ MY P ++V ++W++F ++ PAR L +T++LT+ T + ASLPKVSYVKAID ++ C+LFV A LEYA V ++ + L N + + R S + L+ + T +++ +P Q D AI ++ A K++D ISR FP FL FN+FYWIT+
Sbjct: 47 FLDKLMGRTSGYDARIRPNFKGPPVNVTCNIFIN--SFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLDPSMLDS------IWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQV------AEGLTLPQFILKEEKELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNKEE-----DVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLP----QPPKDGD---------AIKKKFVDRA--KRIDTISRAAFPLAFLIFNIFYWITY 441
The following BLAST results are available for this feature:
BLAST of TCONS_00000488-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M D L P D T H N L T S I I G Q I D T W D E E G H L T Q L L L S I L S I G V T I S P E C W L K F P I M C I G C N W H Q I T A S L R Q T E Y H E V V T T I C T L C N L I N G F I P E N I E F E R K D W F V L Q K L R R S A Q Y E P N L R P N F P K I S E T V N V T I Q L V T I E N L D L S H S S F K L D F L L R Q E W N D H R L R H H H P A V L D G S N L R M G V W V P D S Y F V Q A K R G V F S R V A H D G Q T I K V K S N G D V S H G A R I T L E V S C P I D L R N F P M D I Q H C N L D M E S Y A Y S T E E I T Y N W S P H E V I M K N I K E T S K S L S Q Y T L E P I K T G K G S S E Y V L G N W S K L Q I E F K F V R N S I I F I P A M Y F P C A M V V F I T W I T F L M D S A Q Y P A R T Y L C V T S L L T I V T L Q T A M N A S L P K V S Y V K A I D K Y I V G C I L F V A G A F L E Y A V V L L I N I K K N S V L M E N S S L V S N N H D N I F N N F S Y A L Q P R S E K S K S S L K K K L R R R K I T F L R S R L T S P K E F H D D Q T S S V N D Q Q I V L T K F G A I F H F Y L S D A W P K K L D V I S R V F F P S L F L T F N L F Y W I T H V D D Q Y 50 100 150 200 250 300 350 400 450 500 Expect = 4.51e-59 / Id = 29.84 Sequence GLRA2
Match Name E-value Identity Description
GLRA2 4.512e-59 29.84 Glycine receptor subunit alpha-2 OS=Homo sapiens G... [more]
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