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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000478 ID=TCONS_00000478|Name=TCONS_00000478|organism=Clytia hemisphaerica|type=transcript|length=1175bp
AGTAAATTCACTTACCAAATCCAACACGGAAGGTCTTGCAGTTGTCGAAA
GCGttgaAGATCCATCAGAGGATTTTGTTCGGTGTCGTGACTATGTGGAT
TGTAAAAATTGCATCAAGTTGGACGAATTCAGTAAAGAACATTTATTGCA
AGGGTTTACATCTAAGATGACTACAGCGGCTTTGAAgaaatacaaaatca
ataaaCATCAAGCTCGTCGAATATACGAAATCTTACGTTTATACTACACC
GATAGAAACAATGAAACAATGTTTCGCGAGTACAGACTTGACGTCAAGAA
CAGACTCAATATACCATACCAAAAACAAGCACGTGACATGAAGAAATTGG
AGAAAGCATTATCAGCTGAAGAATACAATGCAGCTATTGTTGGATCGTCA
CGTGATGAAAGAATGCAACGGTTGGAAGATGCGTTCAAATCATTATGTGA
AGACGAATATGCACGTGTTATAAAACGATTGAACACTTATTGTTGATTGG
TTAGATTTTGGTGAGCTGTGAATTTGATTGGTCATTTCGGACGAACTCTT
TGGAtgaatttggaaatttgataattttatggTAATTCTGAAATTGCCAA
ATTTTGATGTGAATATATCTGGACAGGTAAAGTTGATGTGTGGCATGAAC
TTCTAAAACGAtatttatttgataatttttaaaatattttttttactaga
ctaaaattttcagttttctttTGTCTTTGGATTGATTTCAACATTGGTAA
ATTTCCTTTGACATAATTTGACAGaaggataaaattttttggTACCCGAT
AAAAATCCAATTTAATCTTTTTGCATATTGGGATTTGAAAGGTTTTTTAT
AACTCGATTGGTCATGATATCCAATAAAAAGCAACGAAGTTTCAAGAATT
GTATTTTAAAGACATCTATAGGGTAGAAATATTctatacccagctggcac
acaacgtcgtttcaacgttcatctaacgttcacaacgtccatataacgtt
agatgaacgttgtagcaacgttgtgtgccagctgggtaaatTTGAGTTAT
TGTCAGAGaaatatttgacaaaatataTTTGAACTTCATAGTCACTGAAA
TTACTTTTCCCTTTAACTTTATGAATATGATAGGTCAAATCTCCAATTTT
AAGAGAACTGATTTTCTGTGAGAAC Run BLAST on NCBI protein sequence of TCONS_00000478-protein >TCONS_00000478-protein ID=TCONS_00000478-protein|Name=TCONS_00000478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
VNSLTKSNTEGLAVVESVEDPSEDFVRCRDYVDCKNCIKLDEFSKEHLLQ
GFTSKMTTAALKKYKINKHQARRIYEILRLYYTDRNNETMFREYRLDVKN
RLNIPYQKQARDMKKLEKALSAEEYNAAIVGSSRDERMQRLEDAFKSLCE
DEYARVIKRLNTYC Run BLAST on NCBI transcript from alignment at sc0000002:1394306..1400203+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000478 ID=TCONS_00000478|Name=TCONS_00000478|organism=Clytia hemisphaerica|type=transcript|length=5898bp|location=Sequence derived from alignment at sc0000002:1394306..1400203+ (Clytia hemisphaerica)
AGTAAATTCACTTACCAAATCCAACACGGAAGGTCTTGCAGTTGTCGAAA
GCGGTAACCACTATCCTACTACGCCTACAAGACCAAATCCCTTTGTAGCC
CTTATTTACTCGTGAATTCAATCTTGGtctcaatttttttcagttgaAGA
TCCATCAGAGGATTTTGTTCGGTGTCGTGACTATGTGGATTGTAAAAATT
GCATCAAGTTGGACGAATTCAGTAAAGAACATTTATTGCAAGGGTTTACA
TCTAAGATGACTACAGCGGCTTTGAAgaaatacaaaatcaataaagtaAG
TCAAAACCCTGATCATGTCTTTCTTATGTGTTTGTGTCACTCAACCAGCG
AGAATCATTTGGCCTTTTCTAACTAGTTAATAGCTGTGTCTGAGTATGAC
TGAATCCTAACACGATATGGCCGAAAGTTTTCCTATTAGGggtatttatt
ttgttttttctaaaagtttCGTCATTAAGTTCTGGGGAGAAGAAATTTGT
CAATATTACGTTTGGGCCTACggctacaatcagtgccaaaaTATATTGCA
TTGGGAATTTTGGGTATCTCatcgtttttcagaatttaaagctcgtGCGA
GAGTTTtaatttcagtacttccactttgtttcaggggatttttcgatttg
ggaggggttaagtggttTTCAGGATATGTTCTCAGCCATATTgggctttt
agatcctgagatcctaaggtcttaagtctaatgttaaaactcaagaGTTA
AAAATCTACTTTCTAACCGTACTTTAGAGCACTTTAATCAATtgtggttt
taaagttttgagagAATTCCCCTTTGGTGCCAAATATCTCGGCGTCGATT
GTAGATTTAAACTGAAAGTAAAGCTTATCCCGTTTGCAAGCTCGAATTTT
TATGCCcagaaaaatcataattttaactgttgattttttttttgatttga
acagAACTTTCTAAACAATTTGCGTCAATAGGTCATCAAAATGCCATCCT
TTTTTTGAATGGTGAACTATCATTAGCAACCATGTTACTAATGCTCGAGC
CGTGAAGTAAaccaaatattttttactttttaaaaactttttaaaataca
gaggggtctctttaactcgaacccctataactcgaatgtctccttaactc
gaacaagttttattgtCCTTTGggttaacaataccttataaactttactc
taCAACTAAAATTGTCTTTAattaactcaaacaaatttgtgttccccgtg
tgtGTACGAAAATAAAAAGCCTTTGACCCAATATGTATAAAATGGCATTA
TAACAGGGTGGTCATGGTAAATTTCTCACATATTTCTCAGAATTCGATAT
AGAATGCTTAGCAACAACGGGGCTCGAGATGAAAATAGAATTACTTATGA
TAAAAAATGCGTGCCATTATGAGATTTTGTTCTTCAGCAAACTTCAACTA
TTTTTAACGTCCATTGCAAAAGTCAACTCGTTCACAAAAAAAAGATGTCT
TTTAAAGAAGTTGATTAAGAGCAAAATATTATTAAGAAAACCTCAAGGAA
AGCAAACATTAGGATTTATACTGGTTTATACGCGTTTATTCATatgaaca
aactttataagaacatcaggcttcaatgaccaaaatacatgtttttttta
ttagaacatcgaacatccaaagtttttgaagcctttggatgttattaacc
ttttgagtttcaagcctaaaaatgttagaacaagctaagaacatttttag
ctttaaaactcaaaaagttaagaatatccgaaggcttcaaaaattttgga
tgttcttacaaaaaactttttcttattttctattCTTATTCTTATAACTA
ACGCGGGTTATGACAGACCGATCACGTGATacataacaacaaaataatac
cATAGAGATAAAAAGAGATAACGAAACCTATATCCCGGAAATGTTAAACA
TGCTATTTTCAAAAGGGAATAACACACAAAGTCGGGTATGTAAACAATGC
GGAATGACGTCATTGAATACATATTTTCACAAActcaattttgattggtt
gcTATGCTAATTTATGGCTTGATTGAAGACGGGGGTTTTACATGTTATAT
TTTTGTATATTACAAAGAGACTTTTAACGACTTTTTTAAGGAACCAAAAG
ATTGTTTGGGTTATGGAGGTTCGAGGTATAGACTCCACTCTATAGGTTGG
TTTTAAAAATATGGTGGTTTGGTTTTTCAAAGCTTTGGGATCGTATAGCC
CAAAGAATGATGTTTGGACGTACCATACCATTTTTCATATGAACAAACTT
TGAGACccaattacacattttttataagaacaaactatataagaacataa
ggcttcgatggccaaaatattaaaaacaaggtaagagcattttaaggtct
tgcggactctaaaacactcgatttctagagaaaaataatcaaaaaataag
aacatgttaagaacatcctaaggctcaaaaaattttggatgttctataAA
AAAGCGTATCTATCGAAAACAAGCATTATATCATCACGTGACCGATTTAA
ATTTTATGGCCTGTGTAAtgatttatttctattttgttatTGATATTTTG
CGATTGATATTTTGCGATTAAGAAAAGTTGAATAAAGCCGACATGCTCAG
GATAGCGTGTTGGTGGTTTGGAAGAACGCCAGGTTTTTGCTAATCATTTT
ATTGCCATTAGCACATTCCATCATTGCTTTATATCCTAGCACCAACAAGA
CTTTATGATTGCTggacgttttttataagaaagttttttaagcCTTTGGG
TGTCCTTAtttctttgagttttaagcctcaaaatgttcttaacatgttct
tattttccccattttgtgagtatttttgtccattttcctaagaaattaag
TGTTTCATggtcctcaaagccttaaaatgttctcaactttatattttggc
catcgagtacttatgttcttatatagtttgatCTTATAGAAAAGAGAGTA
TTCTAGTGTATTTTCCTTAGGAATTGCACGTTTTAGAGAATGCAAAGGCT
TTTTGGCATCAAAAAGCCTCGTATGTTCTTATCTAGTTTGCTCTTTAAAA
AACGTTTCGACGTAAGATTACCTTTGCTTGactaaatattcttttagcGA
AATTCAGTTATGCTGGATTGTTGATAACCATCGCGTTTTTCTCTGTTTGT
TTTTCAGCATCAAGCTCGTCGAATATACGAAATCTTACGTTTATACTACA
CCGATAGAAACAATGAAACAATGTTTCGCGAGTACAGACTTGACGTCAAG
AACAGACTCAATATACCATACCAAGTAAGTTGATTTTCAAAATCTACCGG
ATGACCCCacgaaaaaaaaccctttttaagtattttttacaCTCCAACAG
ACTAAAGCTCATAAATTTGGCACTAGGGGGTCAAATTCAAATAAGCAACa
gctcaaattttaaattaGGATATCTACATTCCTTATATTGAAATTCTTAA
GCACtttaaaacatttgttttgTCCTTgagacgtcgagaaacgtccgaac
tctttcgtgggtcacccggtacttTTTACCCGAAGTTCTTTAACCACCTT
AGAAATGAAGTGGACTCTTGCTCAATAGAACTTATACTATACGGATAGTT
GCCTCATTATCTGTCAAATATAGTGTGGATAATTGTGTTAACTACTCTTA
AACATTTTCTTTACACTGTCGAAAGCAGTGACAATAAAATGCTTGTAAAA
GACTGTTATTCAGATAGTagttagactagagtctactgaactttgctttt
ttatatttttttatgaagatgAGTAGTAGACTTGTAGTAGTAGCACTtga
cgaggtcgccattttttaaagaaatgNctgaactttgcttttttatattt
ttttatgaagatgAGTAGTAGACTTGTAGTAGTAGCACTtgacgaggtcg
ccattttttaaagaaatgttttgactgttttacagtccgcctaagcaaaa
gcatattgcCATATATACTACCAGACCACTTAATCGCACCATCCagacta
taaaaaagctttatgTGGACCCCAGACTAAGTGGAAAGACTTTACTTATT
CTCTGCCCTCCTTAAGgtcaaatttttataaaaactttccataattcgaa
tgtATTTGTAATTTGAATGactttaattttacttttgagTTCGAATAAGC
AAAAGTTAACGGTGTGAATTTTTAGCTGTGATATGCCATCAGGAATACAA
GGTTAGACATATTcctaagtatttcttttcagtgAAGAAAGTTTAACCGA
CTTGCTTTTTATGTTTAAAGCTTAATATAGAATTTACCTATATCTGACAC
GTGTATAGTGTGTAGTTGGTCCCTTATTGACCTCCCCGGTACTTTTGGCA
AAATGTACCTCAACTGACAAAACTGCCACTTATTCAGTACTTTAGTAATA
GCTGAGTATGCCATATGATAGCCAGAATCTCCCCTGACTATATTGATTTT
AGCTATTGTTTAAGGTAAaagtggcttttaaaattttttattgagtTGAA
AAATTGAGGGCTTTTCTGCATATTGTCACAAAATCAGCACCCCTTTCCTC
ATCTTTTATTTAATAAACAATTTTCCCTTCTATCCTCTCGGCCTTTGTGA
TATTTGGAGAGGTTCCTCCCCCATCCACCTTTAGAAAAGGAGAGTGCAGA
ATTAAAAGTTACTTTATATATATTTGGTGTTAATTCCTGGATAGCTATTT
ATAGCAAATCTTAATGTAACAGCGGTAGTAAGCAAAAAAGAAAGTCTCAC
TTTTTACGAAAAGAAAAGTAATACAGGAGTTATAAACCAGGTCAGCCCAA
AAAAAAGGATACGATGAATCAAAATATAAGACAGAATAGCAAGAAGGATG
CGATGATGACAAGTACTCTGATAGGTGGTTCGTTTTTTTAAATagttatt
ttggaaaattctcttgatttcaaaaagaaataatttccaCGTATAATGGC
CAAGAATTACTTCACAAAAGACCACACCCTGTATCGTTTCTATAGAAACA
AGCACGTGACATGAAGAAATTGGAGAAAGCATTATCAGCTGAAGAATACA
ATGCAGCTATTGTTGGATCGTCACGTGATGAAAGAATGCAACGGTTGGAA
GATGCGTTCAAATCATTATGTGAAGACGAATATGCACGTGTTATAAAACG
ATTGAACACTTATTGTTGATTGGTTAGATTTTGGTGAGCTGTGAATTTGA
TTGGTCATTTCGGACGAACTCTTTGGAtgaatttggaaatttgataattt
tatggTAATTCTGAAATTGCCAAATTTTGATGTGAATATATCTGGACAGG
TAAAGTTGATGTGTGGCATGAACTTCTAAAACGAtatttatttgataatt
tttaaaatattttttttactagactaaaattttcagttttctttTGTCTT
TGGATTGATTTCAACATTGGTAAATTTCCTTTGACATAATTTGACAGaag
gataaaattttttggTACCCGATAAAAATCCAATTTAATCTTTTTGCATA
TTGGGATTTGAAAGGTTTTTTATAACTCGATTGGTCATGATATCCAATAA
AAAGCAACGAAGTTTCAAGAATTGTATTTTAAAGACATCTATAGGGTAGA
AATATTctatacccagctggcacacaacgtcgtttcaacgttcatctaac
gttcacaacgtccatataacgttagatgaacgttgtagcaacgttgtgtg
ccagctgggtaaatTTGAGTTATTGTCAGAGaaatatttgacaaaatata
TTTGAACTTCATAGTCACTGAAATTACTTTTCCCTTTAACTTTATGAATA
TGATAGGTCAAATCTCCAATTTTAAGAGAACTGATTTTCTGTGAGAAC Coding sequence (CDS) from alignment at sc0000002:1394306..1400203+ >TCONS_00000478 ID=TCONS_00000478|Name=TCONS_00000478|organism=Clytia hemisphaerica|type=CDS|length=1980bp|location=Sequence derived from alignment at sc0000002:1394306..1400203+ (Clytia hemisphaerica)
GTAAATTCACTTACCAAATCCAACACGGAAGGTCTTGCAGTTGTCGAAAG
CGttgaAGATCCATCAGAGGATTTTGTTCGGTGTCGTGACTATGTGGATT
GTAAAAATTGCATCAAGTTGGACGAATTCAGTAAAGAACATTTATTGCAA
GGGTTTACATCTAAGATGACTACAGCGGCTTTGAAgaaatacaaaatcaa
taaaCATCAAGCTCGTCGAATATACGAAATCTTACGTTTATACTACACCG
ATAGAAACAATGAAACAATGTTTCGCGAGTACAGACTTGACGTCAAGAAC
AGACTCAATATACCATACCAAAAACAAGCACGTGACATGAAGAAATTGGA
GAAAGCATTATCAGCTGAAGAATACAATGCAGCTATTGTTGGATCGTCAC
GTGATGAAAGAATGCAACGGTTGGAAGATGCGTTCAAATCATTATGTGAA
GACGAATATGCACGTGTTATAAAACGATTGAACACTTATTGTTGAGTAAA
TTCACTTACCAAATCCAACACGGAAGGTCTTGCAGTTGTCGAAAGCGttg
aAGATCCATCAGAGGATTTTGTTCGGTGTCGTGACTATGTGGATTGTAAA
AATTGCATCAAGTTGGACGAATTCAGTAAAGAACATTTATTGCAAGGGTT
TACATCTAAGATGACTACAGCGGCTTTGAAgaaatacaaaatcaataaaC
ATCAAGCTCGTCGAATATACGAAATCTTACGTTTATACTACACCGATAGA
AACAATGAAACAATGTTTCGCGAGTACAGACTTGACGTCAAGAACAGACT
CAATATACCATACCAAAAACAAGCACGTGACATGAAGAAATTGGAGAAAG
CATTATCAGCTGAAGAATACAATGCAGCTATTGTTGGATCGTCACGTGAT
GAAAGAATGCAACGGTTGGAAGATGCGTTCAAATCATTATGTGAAGACGA
ATATGCACGTGTTATAAAACGATTGAACACTTATTGTTGAGTAAATTCAC
TTACCAAATCCAACACGGAAGGTCTTGCAGTTGTCGAAAGCGttgaAGAT
CCATCAGAGGATTTTGTTCGGTGTCGTGACTATGTGGATTGTAAAAATTG
CATCAAGTTGGACGAATTCAGTAAAGAACATTTATTGCAAGGGTTTACAT
CTAAGATGACTACAGCGGCTTTGAAgaaatacaaaatcaataaaCATCAA
GCTCGTCGAATATACGAAATCTTACGTTTATACTACACCGATAGAAACAA
TGAAACAATGTTTCGCGAGTACAGACTTGACGTCAAGAACAGACTCAATA
TACCATACCAAAAACAAGCACGTGACATGAAGAAATTGGAGAAAGCATTA
TCAGCTGAAGAATACAATGCAGCTATTGTTGGATCGTCACGTGATGAAAG
AATGCAACGGTTGGAAGATGCGTTCAAATCATTATGTGAAGACGAATATG
CACGTGTTATAAAACGATTGAACACTTATTGTTGAGTAAATTCACTTACC
AAATCCAACACGGAAGGTCTTGCAGTTGTCGAAAGCGttgaAGATCCATC
AGAGGATTTTGTTCGGTGTCGTGACTATGTGGATTGTAAAAATTGCATCA
AGTTGGACGAATTCAGTAAAGAACATTTATTGCAAGGGTTTACATCTAAG
ATGACTACAGCGGCTTTGAAgaaatacaaaatcaataaaCATCAAGCTCG
TCGAATATACGAAATCTTACGTTTATACTACACCGATAGAAACAATGAAA
CAATGTTTCGCGAGTACAGACTTGACGTCAAGAACAGACTCAATATACCA
TACCAAAAACAAGCACGTGACATGAAGAAATTGGAGAAAGCATTATCAGC
TGAAGAATACAATGCAGCTATTGTTGGATCGTCACGTGATGAAAGAATGC
AACGGTTGGAAGATGCGTTCAAATCATTATGTGAAGACGAATATGCACGT
GTTATAAAACGATTGAACACTTATTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000478-exon-sc0000002-1491911889:1394306..1394358 | TCONS_00000478-exon-sc0000002-1491911889:1394306..1394358 | Clytia hemisphaerica | exon |
| TCONS_00000478-exon-sc0000002-1510915933:1394306..1394358 | TCONS_00000478-exon-sc0000002-1510915933:1394306..1394358 | Clytia hemisphaerica | exon |
| TCONS_00000478-exon-sc0000002-1575043694:1394306..1394358 | TCONS_00000478-exon-sc0000002-1575043694:1394306..1394358 | Clytia hemisphaerica | exon |
| TCONS_00000478-exon-sc0000002-1491911889:1394449..1394600 | TCONS_00000478-exon-sc0000002-1491911889:1394449..1394600 | Clytia hemisphaerica | exon |
| TCONS_00000478-exon-sc0000002-1510915933:1394449..1394600 | TCONS_00000478-exon-sc0000002-1510915933:1394449..1394600 | Clytia hemisphaerica | exon |
| TCONS_00000478-exon-sc0000002-1575043694:1394449..1394600 | TCONS_00000478-exon-sc0000002-1575043694:1394449..1394600 | Clytia hemisphaerica | exon |
| TCONS_00000478-exon-sc0000002-1491911889:1397513..1397629 | TCONS_00000478-exon-sc0000002-1491911889:1397513..1397629 | Clytia hemisphaerica | exon |
| TCONS_00000478-exon-sc0000002-1510915933:1397513..1397629 | TCONS_00000478-exon-sc0000002-1510915933:1397513..1397629 | Clytia hemisphaerica | exon |
| TCONS_00000478-exon-sc0000002-1575043694:1397513..1397629 | TCONS_00000478-exon-sc0000002-1575043694:1397513..1397629 | Clytia hemisphaerica | exon |
| TCONS_00000478-exon-sc0000002-1491911889:1399351..1400203 | TCONS_00000478-exon-sc0000002-1491911889:1399351..1400203 | Clytia hemisphaerica | exon |
| TCONS_00000478-exon-sc0000002-1510915933:1399351..1400203 | TCONS_00000478-exon-sc0000002-1510915933:1399351..1400203 | Clytia hemisphaerica | exon |
| TCONS_00000478-exon-sc0000002-1575043694:1399351..1400203 | TCONS_00000478-exon-sc0000002-1575043694:1399351..1400203 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1394306..1400203 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016181 | Acyl_CoA_acyltransferase |
Blast
BLAST of TCONS_00000478 vs. Swiss-Prot (Human)
Match: HAT1 (Histone acetyltransferase type B catalytic subunit OS=Homo sapiens GN=HAT1 PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 9.583e-31 Identity = 66/144 (45.83%), Postives = 92/144 (63.89%), Query Frame = 2
Query: 50 SVEDPSEDFVRCRDYVDCKNCIKLDEFSKEHLLQGFTSKMTTAALKKYKINKHQARRIYEILRLYYTDRNNETMFREYRLDVKNRLNIPYQKQARDMKKLEKALSAEEYNAAIVGSSRDERMQRLEDAFKSLCEDEYARVIKRL 481
+ EDPS+ +V+ RD+V K C L FS+E L+QGF M A +K+KINK ARR+YEILRL TD ++ +R YRLD+K RL PY+K+ RD+ K+ K L EE + + ++LE++F+ L ED Y RVI+RL
Sbjct: 274 TAEDPSKSYVKLRDFVLVKLCQDLPCFSREKLMQGFNEDMAIEAQQKFKINKQHARRVYEILRLLVTDMSDAEQYRSYRLDIKRRLISPYKKKQRDLAKMRKCLRPEELTNQMNQIEISMQHEQLEESFQELVED-YRRVIERL 416
The following BLAST results are available for this feature:
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