TCONS_00000472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000472
Unique NameTCONS_00000472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1135

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000472 ID=TCONS_00000472|Name=TCONS_00000472|organism=Clytia hemisphaerica|type=transcript|length=1135bp
GGCTTCCCGAGCGATTCGAATAGCAAATGTTGATATTTCTAACACCCGAT
TGTATGTAATCCATATTATCAAAAACGAAAGAGCACACGAGAATAAtatt
ggtcaattttagactaaAACTTGGAAGGTCAGCTTTTCGGAGTACTAATA
TATAAATGATGTTTCGAATTAAAAATGATTAGATATTACAAGTATACAAA
AATTAGcgagtttttattttcatgttaCTTTTAATAACTGTTCTATAAAT
GGAATCACTTAACCACTCTGGTAAGCTGATCAGAATTAAACGAACGAATT
CATGAGCAGGATATCCACACGCAACATTAGTAAGACCAAGGGTACGTAAA
GCTGATGAAACATAAGCATAAGCAGTTGGTGTTTTAAAATCGGGTTTACT
ATCTGACATTTTCGTTGATACTTGCAGAGTTGTCAAGACCTGATGATCGA
CAATTCCTTGACATTCTAAGCGTAACGATTCTGCCAGTTTAACAACAAAC
GACTTTGTGGCAGCATATGTATTAGCCATACCAGCTCTAGTGAAGACAGC
TCCTGATGAAATATGAACCATTGCGCCACGACCTCTTTCGACCATTCCAC
CTTGAATCATATGTGTCATTCGAACCACAGAAAACATATTGACTTTCATG
ATGTTTGCCATTCGAGTTAAATCGAATCCATGAAAGAGTTGTAAATCGTA
GCCATAAGCCAATCCAACATTATTGATCAAAATACCAATATCCAAACCAC
TCAACTCAGAAGCCATTATTTTATAAGCTTTTTCATCGTCAATATTGCAA
aagtcatgttgaataattttcGTTTCAACATTACTAGATTCTTTGATTTC
AGAAGCTACTTGATTTAACTTTTCCACATTACGGCTGATGAGAATAACAT
TGAGTCCTTGAGATGCAAGTTGTTTAGCATATTCTTTACCTATTCCATCA
GTACAACCCGTCACTACTGCCCATTGACCATATTCCTTCAAATTCTTACG
AAAATAAGGGATACGAGTCAAATAATAAGTACGAACGATAAACCAAGTGT
ATGAAACAATATGGTACGTGATGTACATCAAACATAACCAGCCAAGATAG
ACCAAGTATGTTTCTTCCATGGTGTAAGCTTGTCT
Run BLAST on NCBI

transcript from alignment at sc0000002:1193354..1194488+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000472 ID=TCONS_00000472|Name=TCONS_00000472|organism=Clytia hemisphaerica|type=transcript|length=1135bp|location=Sequence derived from alignment at sc0000002:1193354..1194488+ (Clytia hemisphaerica)
GGCTTCCCGAGCGATTCGAATAGCAAATGTTGATATTTCTAACACCCGAT
TGTATGTAATCCATATTATCAAAAACGAAAGAGCACACGAGAATAAtatt
ggtcaattttagactaaAACTTGGAAGGTCAGCTTTTCGGAGTACTAATA
TATAAATGATGTTTCGAATTAAAAATGATTAGATATTACAAGTATACAAA
AATTAGcgagtttttattttcatgttaCTTTTAATAACTGTTCTATAAAT
GGAATCACTTAACCACTCTGGTAAGCTGATCAGAATTAAACGAACGAATT
CATGAGCAGGATATCCACACGCAACATTAGTAAGACCAAGGGTACGTAAA
GCTGATGAAACATAAGCATAAGCAGTTGGTGTTTTAAAATCGGGTTTACT
ATCTGACATTTTCGTTGATACTTGCAGAGTTGTCAAGACCTGATGATCGA
CAATTCCTTGACATTCTAAGCGTAACGATTCTGCCAGTTTAACAACAAAC
GACTTTGTGGCAGCATATGTATTAGCCATACCAGCTCTAGTGAAGACAGC
TCCTGATGAAATATGAACCATTGCGCCACGACCTCTTTCGACCATTCCAC
CTTGAATCATATGTGTCATTCGAACCACAGAAAACATATTGACTTTCATG
ATGTTTGCCATTCGAGTTAAATCGAATCCATGAAAGAGTTGTAAATCGTA
GCCATAAGCCAATCCAACATTATTGATCAAAATACCAATATCCAAACCAC
TCAACTCAGAAGCCATTATTTTATAAGCTTTTTCATCGTCAATATTGCAA
aagtcatgttgaataattttcGTTTCAACATTACTAGATTCTTTGATTTC
AGAAGCTACTTGATTTAACTTTTCCACATTACGGCTGATGAGAATAACAT
TGAGTCCTTGAGATGCAAGTTGTTTAGCATATTCTTTACCTATTCCATCA
GTACAACCCGTCACTACTGCCCATTGACCATATTCCTTCAAATTCTTACG
AAAATAAGGGATACGAGTCAAATAATAAGTACGAACGATAAACCAAGTGT
ATGAAACAATATGGTACGTGATGTACATCAAACATAACCAGCCAAGATAG
ACCAAGTATGTTTCTTCCATGGTGTAAGCTTGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000296XLOC_000296Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000472-exon-sc0000002-1491911889:1193354..1194488TCONS_00000472-exon-sc0000002-1491911889:1193354..1194488Clytia hemisphaericaexon
TCONS_00000472-exon-sc0000002-1510915933:1193354..1194488TCONS_00000472-exon-sc0000002-1510915933:1193354..1194488Clytia hemisphaericaexon
TCONS_00000472-exon-sc0000002-1575043694:1193354..1194488TCONS_00000472-exon-sc0000002-1575043694:1193354..1194488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1193354..1194488 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.07017	3.1355	2.94052	1.75168	1.72991	0.916391	1.65922	1.66755	1.36244	1.70943	0.56224	1.00787	1.09854	1.01905	2.09082	2.5359	1.86235	2.44762	0.811908	1.21921	1.62973	1.49335	5.51095	5.1256	1.42316	1.26309	1.33474	0.354955	2.85631	2.79483
Blast
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BLAST of TCONS_00000472 vs. Swiss-Prot (Human)
Match: DHB12 (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.277e-53
Identity = 109/265 (41.13%), Postives = 163/265 (61.51%), Query Frame = -1 
Query:  206 GQWAVVTGCTDGIGKEYAKQLASQGLNVILISRNVEKLNQVASEIKESSNVETKIIQHDFCNIDDEKAYKIMASELSGLDIGILINNVGLAYGYDLQLFHGFDLTRMANIMK----VNMFSVVRMTHMIQGGMVERGRGAMVHISSGAVFTRAGMANTYAATKSFVVKLAESLRLE--CQGIVDHQVLTTLQVSTKMSD-SKPDFKTPTAYAYVSSALRTLGLTNVACGYPAHEFVRLILISLPEWLSDSIYRTVIKSNMKIKTR 979
            G+WAVVTG TDGIGK YA++LA  G+ V+LISR+ +KL+QV+SEIKE   VET+ I  DF +   E  Y  + + L+GL+IGIL+NNVG++Y Y  + F   D+  + N++K    +N+ SV +MT ++  GMVER +GA+++ISSG+      +   Y+ATK+FV   ++ L  E   +G+    VL    V+TK++   KP    P+   +V SA++T+GL +   GY  H  +  I+ +LP W    IY  ++  NM   TR
Sbjct:   50 GEWAVVTGSTDGIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEKFKVETRTIAVDFAS---EDIYDKIKTGLAGLEIGILVNNVGMSYEYP-EYF--LDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYRSKGVFVQSVLPYF-VATKLAKIRKPTLDKPSPETFVKSAIKTVGLQSRTNGYLIHALMGSIISNLPSW----IYLKIVM-NMNKSTR 302
The following BLAST results are available for this feature:
BLAST of TCONS_00000472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHB122.277e-5341.13Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sa... [more]
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