Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000472 ID=TCONS_00000472|Name=TCONS_00000472|organism=Clytia hemisphaerica|type=transcript|length=1135bp
GGCTTCCCGAGCGATTCGAATAGCAAATGTTGATATTTCTAACACCCGAT
TGTATGTAATCCATATTATCAAAAACGAAAGAGCACACGAGAATAAtatt
ggtcaattttagactaaAACTTGGAAGGTCAGCTTTTCGGAGTACTAATA
TATAAATGATGTTTCGAATTAAAAATGATTAGATATTACAAGTATACAAA
AATTAGcgagtttttattttcatgttaCTTTTAATAACTGTTCTATAAAT
GGAATCACTTAACCACTCTGGTAAGCTGATCAGAATTAAACGAACGAATT
CATGAGCAGGATATCCACACGCAACATTAGTAAGACCAAGGGTACGTAAA
GCTGATGAAACATAAGCATAAGCAGTTGGTGTTTTAAAATCGGGTTTACT
ATCTGACATTTTCGTTGATACTTGCAGAGTTGTCAAGACCTGATGATCGA
CAATTCCTTGACATTCTAAGCGTAACGATTCTGCCAGTTTAACAACAAAC
GACTTTGTGGCAGCATATGTATTAGCCATACCAGCTCTAGTGAAGACAGC
TCCTGATGAAATATGAACCATTGCGCCACGACCTCTTTCGACCATTCCAC
CTTGAATCATATGTGTCATTCGAACCACAGAAAACATATTGACTTTCATG
ATGTTTGCCATTCGAGTTAAATCGAATCCATGAAAGAGTTGTAAATCGTA
GCCATAAGCCAATCCAACATTATTGATCAAAATACCAATATCCAAACCAC
TCAACTCAGAAGCCATTATTTTATAAGCTTTTTCATCGTCAATATTGCAA
aagtcatgttgaataattttcGTTTCAACATTACTAGATTCTTTGATTTC
AGAAGCTACTTGATTTAACTTTTCCACATTACGGCTGATGAGAATAACAT
TGAGTCCTTGAGATGCAAGTTGTTTAGCATATTCTTTACCTATTCCATCA
GTACAACCCGTCACTACTGCCCATTGACCATATTCCTTCAAATTCTTACG
AAAATAAGGGATACGAGTCAAATAATAAGTACGAACGATAAACCAAGTGT
ATGAAACAATATGGTACGTGATGTACATCAAACATAACCAGCCAAGATAG
ACCAAGTATGTTTCTTCCATGGTGTAAGCTTGTCT Run BLAST on NCBI transcript from alignment at sc0000002:1193354..1194488+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000472 ID=TCONS_00000472|Name=TCONS_00000472|organism=Clytia hemisphaerica|type=transcript|length=1135bp|location=Sequence derived from alignment at sc0000002:1193354..1194488+ (Clytia hemisphaerica)
GGCTTCCCGAGCGATTCGAATAGCAAATGTTGATATTTCTAACACCCGAT
TGTATGTAATCCATATTATCAAAAACGAAAGAGCACACGAGAATAAtatt
ggtcaattttagactaaAACTTGGAAGGTCAGCTTTTCGGAGTACTAATA
TATAAATGATGTTTCGAATTAAAAATGATTAGATATTACAAGTATACAAA
AATTAGcgagtttttattttcatgttaCTTTTAATAACTGTTCTATAAAT
GGAATCACTTAACCACTCTGGTAAGCTGATCAGAATTAAACGAACGAATT
CATGAGCAGGATATCCACACGCAACATTAGTAAGACCAAGGGTACGTAAA
GCTGATGAAACATAAGCATAAGCAGTTGGTGTTTTAAAATCGGGTTTACT
ATCTGACATTTTCGTTGATACTTGCAGAGTTGTCAAGACCTGATGATCGA
CAATTCCTTGACATTCTAAGCGTAACGATTCTGCCAGTTTAACAACAAAC
GACTTTGTGGCAGCATATGTATTAGCCATACCAGCTCTAGTGAAGACAGC
TCCTGATGAAATATGAACCATTGCGCCACGACCTCTTTCGACCATTCCAC
CTTGAATCATATGTGTCATTCGAACCACAGAAAACATATTGACTTTCATG
ATGTTTGCCATTCGAGTTAAATCGAATCCATGAAAGAGTTGTAAATCGTA
GCCATAAGCCAATCCAACATTATTGATCAAAATACCAATATCCAAACCAC
TCAACTCAGAAGCCATTATTTTATAAGCTTTTTCATCGTCAATATTGCAA
aagtcatgttgaataattttcGTTTCAACATTACTAGATTCTTTGATTTC
AGAAGCTACTTGATTTAACTTTTCCACATTACGGCTGATGAGAATAACAT
TGAGTCCTTGAGATGCAAGTTGTTTAGCATATTCTTTACCTATTCCATCA
GTACAACCCGTCACTACTGCCCATTGACCATATTCCTTCAAATTCTTACG
AAAATAAGGGATACGAGTCAAATAATAAGTACGAACGATAAACCAAGTGT
ATGAAACAATATGGTACGTGATGTACATCAAACATAACCAGCCAAGATAG
ACCAAGTATGTTTCTTCCATGGTGTAAGCTTGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000472-exon-sc0000002-1491911889:1193354..1194488 | TCONS_00000472-exon-sc0000002-1491911889:1193354..1194488 | Clytia hemisphaerica | exon |
| TCONS_00000472-exon-sc0000002-1510915933:1193354..1194488 | TCONS_00000472-exon-sc0000002-1510915933:1193354..1194488 | Clytia hemisphaerica | exon |
| TCONS_00000472-exon-sc0000002-1575043694:1193354..1194488 | TCONS_00000472-exon-sc0000002-1575043694:1193354..1194488 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1193354..1194488 + |
Blast
BLAST of TCONS_00000472 vs. Swiss-Prot (Human)
Match: DHB12 (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2) HSP 1 Score: 182.185 bits (461), Expect = 2.277e-53 Identity = 109/265 (41.13%), Postives = 163/265 (61.51%), Query Frame = -1 Query: 206 GQWAVVTGCTDGIGKEYAKQLASQGLNVILISRNVEKLNQVASEIKESSNVETKIIQHDFCNIDDEKAYKIMASELSGLDIGILINNVGLAYGYDLQLFHGFDLTRMANIMK----VNMFSVVRMTHMIQGGMVERGRGAMVHISSGAVFTRAGMANTYAATKSFVVKLAESLRLE--CQGIVDHQVLTTLQVSTKMSD-SKPDFKTPTAYAYVSSALRTLGLTNVACGYPAHEFVRLILISLPEWLSDSIYRTVIKSNMKIKTR 979
G+WAVVTG TDGIGK YA++LA G+ V+LISR+ +KL+QV+SEIKE VET+ I DF + E Y + + L+GL+IGIL+NNVG++Y Y + F D+ + N++K +N+ SV +MT ++ GMVER +GA+++ISSG+ + Y+ATK+FV ++ L E +G+ VL V+TK++ KP P+ +V SA++T+GL + GY H + I+ +LP W IY ++ NM TR
Sbjct: 50 GEWAVVTGSTDGIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEKFKVETRTIAVDFAS---EDIYDKIKTGLAGLEIGILVNNVGMSYEYP-EYF--LDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYRSKGVFVQSVLPYF-VATKLAKIRKPTLDKPSPETFVKSAIKTVGLQSRTNGYLIHALMGSIISNLPSW----IYLKIVM-NMNKSTR 302
The following BLAST results are available for this feature:
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