TCONS_00000471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000471
Unique NameTCONS_00000471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1219

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000471 ID=TCONS_00000471|Name=TCONS_00000471|organism=Clytia hemisphaerica|type=transcript|length=1219bp
CTCAGAAATGTCGATTCGAACTTaaccaatcaaacaaaaacaaagtaaTT
AAAAAACTTCTGTTATTGCCCTATACTGCCAAGAcagttaaatggaaaaa
aatctacTAATATTCATTTATTATAATTTGACTAAATTCCAAAATATATT
CTACCTATCATGATTCTATCATAATGTCATATTAATCGAatgaaaagaaa
tcaaaattgaacataaaaatcaatcatATTTTAGTGATCAAAATTGCCAT
CcccataaatttcaaaaatatttctaatattCCATCCTTAACCGTTCATC
TCATTTTTTCTTTCCTGCTTCTGGCAATCTTGAAAACCCAATAACAAACT
TTTTCCGGCAAAGCTAACAAGATGAGTCTTATCATTTCATGCGATGGGTA
TCCACATGCAATAGGGGCAACACCAAGGGTTCGAAGAGCTGATGCAACAT
AATCTTGAGGAGTCGGGATAGTGGGAGCTGGTCTCACTTTGGACATCTTA
GAAGAAACATACATTGTGGTCAAAACTTGGTGATCGACGATCCCTTGACA
TTCTAAACGTAGCGTTTCAGCCATCTTCAATACAAATGATTTAGTAGAGG
AATAAACATTTGCCATTCCAGATTTCAAGAAGACTGTTCCAGACGAGATA
TGAACAATAGCGCCACGCCCTCTTTTGACCATTCCACCTTGAAGCATGTG
TGTCATACGGACCACGTTGAACATATTGACTTTCATGATGTTTGCCATTC
GAGTTAAATCGAATCCATGAAAGAGTTGTAAATCGTAGCCATAAGCCAAT
CCAACATTATTGATCAAAATACCAATATCCAAACCACTCAACTCAGAAGC
CATTATTTTATAAGCTTTTTCATCGTCAATATTGCAAaagtcatgttgaa
taattttcGTTTCAACATTACTAGATTCTTTGATTTCAGAAGCTACTTGA
TTTAACTTTTCCACATTACGGCTGATGAGAATAACATTGAGTCCTTGAGA
TGCAAGTTGTTTAGCATATTCTTTACCTATTCCATCAGTACAACCCGTCA
CTACTGCCCATTGACCATATTCCTTCAAATTCTTACGAAAATAAGGGATA
CGAGTCAAATAATAAGTACGAACGATAAACCAAGTGTATGAAACAATATG
GTACGTGATGTACATCAAACATAACCAGCCAAGATAGACCAAGTATGTTT
CTTCCATGGTGTAAGCTTG
Run BLAST on NCBI

transcript from alignment at sc0000002:1189858..1194485+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000471 ID=TCONS_00000471|Name=TCONS_00000471|organism=Clytia hemisphaerica|type=transcript|length=4628bp|location=Sequence derived from alignment at sc0000002:1189858..1194485+ (Clytia hemisphaerica)
CTCAGAAATGTCGATTCGAACTTaaccaatcaaacaaaaacaaagtaaTT
AAAAAACTTCTGTTATTGCCCTATACTGCCAAGAcagttaaatggaaaaa
aatctacTAATATTCATTTATTATAATTTGACTAAATTCCAAAATATATT
CTACCTATCATGATTCTATCATAATGTCATATTAATCGAatgaaaagaaa
tcaaaattgaacataaaaatcaatcatATTTTAGTGATCAAAATTGCCAT
CcccataaatttcaaaaatatttctaatattCCATCCTTAACCGTTCATC
TCATTTTTTCTTTCCTGCTTCTGGCAATCTTGAAAACCCAATAACAAACT
TTTTCCGGCAAAGCTAACAAGATGAGTCTTATCATTTCATGCGATGGGTA
TCCACATGCAATAGGGGCAACACCAAGGGTTCGAAGAGCTGATGCAACAT
AATCTTGAGGAGTCGGGATAGTGGGAGCTGGTCTCACTTTGGACATCTTA
GAAGAAACATACATTGTGGTCAAAACTTGGTGATCGACGATCCCTTGACA
TTCTAAACGTAGCGTTTCAGCCATCTTCAATACAAATGATTTAGTAGAGG
AATAAACATTTGCCATTCCAGATTTCAAGAAGACTGTTCCAGACGAGATA
TGAACAATAGCGCCACGCCCTCTTTTGACCATTCCACCTTGAAGCATGTG
TGTCATACGGACCACGTTGAACATATTTACTTTCATGATGTTAGAAAGTC
GATCGTGATCCAAATCGTGGAGCATTTTCAAAGGGCCACCATAAGCCATT
CCAACGTTATTGATCAAAATACCAATATCCAAACCATTCAGctcagaagc
cattatttcatAAGCTTTTTCATCGTCAATATTACAAaagtcatgttgaa
taattttcGTTTCAACATTACTAGATTCTTTGATTTCAGAAGCCAATTGA
TTCAACTTTTCCACATTACGGCTGATGAGAACAACATTGAGTCCTTTAGA
TGCAAGTTGTTTAGCATATTCTTTACCGATTCCATCAGTACAACCCGTCA
CTACTGCCCATTGACCATATTCCTTCAAATTCTTACGAAAATAAGGGATG
CGAGTCAAGTAATAAGTACGAACGATAAACCAAGTGTATGAAACAATATG
GTATACAATGTACATCAAACATAACCAGCCAAGATAGACCAAGTATGTTT
CTTCCATTTTCTTcctgtttttaattttatttatctgcaatgaaaacaaa
aatattatataCCATGGATTCTTGcaccttttttttaaatacattagatg
cttttttttataagaatagtgtactttcgatgagggtcaagtatttttaa
gaaattgccaaaattgagggtgaaatattcttaacgtattcttaattttt
cagactttttttacaaacatgagaaatgatcaatttgagagttttgtact
tttgaatgaacatttggagctaaaattacatttctgtcTAACAAAGTaag
cagtttttttttattaaccaaatacaaaatgacagtattcttatcaaatt
ctgtgaaactcaccctgatattcttatagaagatattcttataaaaaaag
cgtgtaaatctTTTCTGGCCTCATTTTGATGCAGAGCGGCCATCTCCAAC
TCTATACATAAATATATTCCCAAAAGGTACTTTTACTAAATTAAATTATG
GAAAGAAAATGCTAACGTTTAAAAGTTGTAACTTTCTTTTGTGTATCATT
ATTTCAAAGATAAAAGAATGTGTGAATGGGTGAGTGGACggttgaatgaa
tgaatgactgGTTGgagaacgaacgaacgaacgaacgaacgaacgaacga
acgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaac
gaacgaacgaacgcaatcgaatggaaaaattgaaaaggaaattAATCTCT
TTTGCCCTTTGCATCGCTTCTGCTACTAAAAGTATATGTATGCACCAAAT
TGCTGATTTTCTCCGACAGACAAATCATGAATAAACGATGGAGTTCATGA
ACTGGAGTACCGCAAGCTATGGGCGCAATGCCGATAGTACGAAGAGCTGA
CGACACATAATTTTCAGAAGTAGGTGTTGCAAAATCAGGATTTGCTCCAG
TCATTTTTGTCGACACTTGCATAGTGGTGAGTACCTGGTGATCTACAACT
CCTTGACATTCTAAGCGTAACGATTCTGCTAGCTTCAAAACAAACTGTTT
GGAAGCCGTGTACGTGTTAGCCTTTGCACCTTTAAAGAATACAAGTCCAG
ACGAGATATGAACCATTGCGCCACGCCCTCTTTTGACCATTCCACCTTGA
ATCATGTGTGTCATTCGAACAGTTGAAAAATTGTTCACTTTTATGATGCT
TAACATTCGATTAAGGTTGAATTCGTCAAAAGCTTTTAGAGGACCACCAT
GAGCCATTCCAACGTTATTGACCAAAATTCCAATATCCAGATCCCTTAGG
TCAGAAGCCATTGATTCATAAGTTTTTTCATCGTCAATATTGCAAaagtc
atgttgaataattttcGTTTCAACATTACTAGATTCTTTGATTTCAGAAG
CCACTTGATTTAACTTTTCCACATTACGGCTGATGAGAACAACATTGAGT
CCTTGAGATGCAAGTTGTTTAGCATATTCTTTACCGATTCCATCAGTACA
ACCCGTCACTACTGCCCATTGACCATATTCCTTCAAATCCTTACGAAAAT
AAGGGATGCGAGTCAAGTAATAAGTACGAACGATAAACCAAGTGTATGAA
ACAATATGGTACGTGATGTACATCAAACATAACCAGCCAAGATAGACCAA
GACCAAGTATGTTTCTTCCATGGTGTAAGCTTGTCTAATGTTTTATTTAA
CTGTAACGAATAGAAGTATGTAatgcttttgaaaaaacaaacacccctgt
gtcacagacccgctgagtCCCCAGNAAACATAACCAGCCAAGATAGACCA
AGTATGTTTCTTCCATGTTCTTGctgtttatattttgttttatgTCTACA
ACGATAGCAAAATATAATAATCTCTATCTCGCACACTTACTGTCATGCAA
GCTTTATCAACCACGCTTTTAACTGAATTtactggaaaatttcaaaacga
CTAACTAACCAGTTCGGAAAATTGCATAGAATTGCAGCACTCCGAAATTC
CACAATTTTAGCTTTGTCAAATTCTACAACGTTAAATTTTGCAACTTTTC
CTgtccactgcaaaatattgcaaCTTTTGCTTTTGAAAAGGGATCTCAAA
ACATGTAAACTtcgcttttttcgaaaaaaattggtcGGCGTTCATAACTT
TCAATTACAAGCTTTAAAATTGAAAGCGTTGCGTAGAATTACAGCGCACC
CCTGGCGGAAGCGTTGCAAAAACCATCAACGTTGTGGAATATTACAGGGC
TGCAGAATTATGCAGTTTTCTCTTGCTGAACTGATGACCGTACAAAGGCT
TCCCGAGCGATTCGAATAGCAAATGTTGATATTTCTAACACCCGATTGTA
TGTAATCCATATTATCAAAAACGAAAGAGCACACGAGAATAAtattggtc
aattttagactaaAACTTGGAAGGTCAGCTTTTCGGAGTACTAATATATA
AATGATGTTTCGAATTAAAAATGATTAGATATTACAAGTATACAAAAATT
AGcgagtttttattttcatgttaCTTTTAATAACTGTTCTATAAATGGAA
TCACTTAACCACTCTGGTAAGCTGATCAGAATTAAACGAACGAATTCATG
AGCAGGATATCCACACGCAACATTAGTAAGACCAAGGGTACGTAAAGCTG
ATGAAACATAAGCATAAGCAGTTGGTGTTTTAAAATCGGGTTTACTATCT
GACATTTTCGTTGATACTTGCAGAGTTGTCAAGACCTGATGATCGACAAT
TCCTTGACATTCTAAGCGTAACGATTCTGCCAGTTTAACAACAAACGACT
TTGTGGCAGCATATGTATTAGCCATACCAGCTCTAGTGAAGACAGCTCCT
GATGAAATATGAACCATTGCGCCACGACCTCTTTCGACCATTCCACCTTG
AATCATATGTGTCATTCGAACCACAGAAAACATATTGACTTTCATGATGT
TTGCCATTCGAGTTAAATCGAATCCATGAAAGAGTTGTAAATCGTAGCCA
TAAGCCAATCCAACATTATTGATCAAAATACCAATATCCAAACCACTCAA
CTCAGAAGCCATTATTTTATAAGCTTTTTCATCGTCAATATTGCAAaagt
catgttgaataattttcGTTTCAACATTACTAGATTCTTTGATTTCAGAA
GCTACTTGATTTAACTTTTCCACATTACGGCTGATGAGAATAACATTGAG
TCCTTGAGATGCAAGTTGTTTAGCATATTCTTTACCTATTCCATCAGTAC
AACCCGTCACTACTGCCCATTGACCATATTCCTTCAAATTCTTACGAAAA
TAAGGGATACGAGTCAAATAATAAGTACGAACGATAAACCAAGTGTATGA
AACAATATGGTACGTGATGTACATCAAACATAACCAGCCAAGATAGACCA
AGTATGTTTCTTCCATGGTGTAAGCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000296XLOC_000296Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000471-exon-sc0000002-1491911889:1189858..1190579TCONS_00000471-exon-sc0000002-1491911889:1189858..1190579Clytia hemisphaericaexon
TCONS_00000471-exon-sc0000002-1510915933:1189858..1190579TCONS_00000471-exon-sc0000002-1510915933:1189858..1190579Clytia hemisphaericaexon
TCONS_00000471-exon-sc0000002-1575043694:1189858..1190579TCONS_00000471-exon-sc0000002-1575043694:1189858..1190579Clytia hemisphaericaexon
TCONS_00000471-exon-sc0000002-1491911889:1193989..1194485TCONS_00000471-exon-sc0000002-1491911889:1193989..1194485Clytia hemisphaericaexon
TCONS_00000471-exon-sc0000002-1510915933:1193989..1194485TCONS_00000471-exon-sc0000002-1510915933:1193989..1194485Clytia hemisphaericaexon
TCONS_00000471-exon-sc0000002-1575043694:1193989..1194485TCONS_00000471-exon-sc0000002-1575043694:1193989..1194485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1189858..1194485 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.8229	23.571	7.67081	6.88856	2.71138	2.56602	2.97396	4.30778	2.45804	2.09915	2.82599	1.43074	1.64437	1.42238	4.64265	4.12378	6.42298	3.53907	2.02257	2.3063	2.41582	1.58547	8.95083	7.29621	0	0	2.95167	1.89922	8.46225	6.06809
Blast
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BLAST of TCONS_00000471 vs. Swiss-Prot (Human)
Match: DHB12 (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 3.142e-52
Identity = 103/252 (40.87%), Postives = 163/252 (64.68%), Query Frame = -1 
Query:  332 GQWAVVTGCTDGIGKEYAKQLASQGLNVILISRNVEKLNQVASEIKESSNVETKIIQHDFCNIDDEKAYKIMASELSGLDIGILINNVGLAYGYDLQLFHGFDLTRMANIMK----VNMFNVVRMTHMLQGGMVKRGRGAIVHISSGTVFLKSGMANVYSSTKSFVLKMAETLRLE--CQGIVDHQVLTTMYVSSKMSKVR-PAPTIPTPQDYVASALRTLGVAPIACGYPSHEMIRLILLALPEKVCYWVF 1066
            G+WAVVTG TDGIGK YA++LA  G+ V+LISR+ +KL+QV+SEIKE   VET+ I  DF +   E  Y  + + L+GL+IGIL+NNVG++Y Y  + F   D+  + N++K    +N+ +V +MT ++  GMV+R +GAI++ISSG+  L   +  +YS+TK+FV   ++ L  E   +G+    VL   +V++K++K+R P    P+P+ +V SA++T+G+     GY  H ++  I+  LP     W++
Sbjct:   50 GEWAVVTGSTDGIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEKFKVETRTIAVDFAS---EDIYDKIKTGLAGLEIGILVNNVGMSYEYP-EYF--LDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYRSKGVFVQSVL-PYFVATKLAKIRKPTLDKPSPETFVKSAIKTVGLQSRTNGYLIHALMGSIISNLPS----WIY 290
The following BLAST results are available for this feature:
BLAST of TCONS_00000471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHB123.142e-5240.87Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sa... [more]
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