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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000471 ID=TCONS_00000471|Name=TCONS_00000471|organism=Clytia hemisphaerica|type=transcript|length=1219bp CTCAGAAATGTCGATTCGAACTTaaccaatcaaacaaaaacaaagtaaTT AAAAAACTTCTGTTATTGCCCTATACTGCCAAGAcagttaaatggaaaaa aatctacTAATATTCATTTATTATAATTTGACTAAATTCCAAAATATATT CTACCTATCATGATTCTATCATAATGTCATATTAATCGAatgaaaagaaa tcaaaattgaacataaaaatcaatcatATTTTAGTGATCAAAATTGCCAT CcccataaatttcaaaaatatttctaatattCCATCCTTAACCGTTCATC TCATTTTTTCTTTCCTGCTTCTGGCAATCTTGAAAACCCAATAACAAACT TTTTCCGGCAAAGCTAACAAGATGAGTCTTATCATTTCATGCGATGGGTA TCCACATGCAATAGGGGCAACACCAAGGGTTCGAAGAGCTGATGCAACAT AATCTTGAGGAGTCGGGATAGTGGGAGCTGGTCTCACTTTGGACATCTTA GAAGAAACATACATTGTGGTCAAAACTTGGTGATCGACGATCCCTTGACA TTCTAAACGTAGCGTTTCAGCCATCTTCAATACAAATGATTTAGTAGAGG AATAAACATTTGCCATTCCAGATTTCAAGAAGACTGTTCCAGACGAGATA TGAACAATAGCGCCACGCCCTCTTTTGACCATTCCACCTTGAAGCATGTG TGTCATACGGACCACGTTGAACATATTGACTTTCATGATGTTTGCCATTC GAGTTAAATCGAATCCATGAAAGAGTTGTAAATCGTAGCCATAAGCCAAT CCAACATTATTGATCAAAATACCAATATCCAAACCACTCAACTCAGAAGC CATTATTTTATAAGCTTTTTCATCGTCAATATTGCAAaagtcatgttgaa taattttcGTTTCAACATTACTAGATTCTTTGATTTCAGAAGCTACTTGA TTTAACTTTTCCACATTACGGCTGATGAGAATAACATTGAGTCCTTGAGA TGCAAGTTGTTTAGCATATTCTTTACCTATTCCATCAGTACAACCCGTCA CTACTGCCCATTGACCATATTCCTTCAAATTCTTACGAAAATAAGGGATA CGAGTCAAATAATAAGTACGAACGATAAACCAAGTGTATGAAACAATATG GTACGTGATGTACATCAAACATAACCAGCCAAGATAGACCAAGTATGTTT CTTCCATGGTGTAAGCTTG Run BLAST on NCBI transcript from alignment at sc0000002:1189858..1194485+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000471 ID=TCONS_00000471|Name=TCONS_00000471|organism=Clytia hemisphaerica|type=transcript|length=4628bp|location=Sequence derived from alignment at sc0000002:1189858..1194485+ (Clytia hemisphaerica) CTCAGAAATGTCGATTCGAACTTaaccaatcaaacaaaaacaaagtaaTT
AAAAAACTTCTGTTATTGCCCTATACTGCCAAGAcagttaaatggaaaaa
aatctacTAATATTCATTTATTATAATTTGACTAAATTCCAAAATATATT
CTACCTATCATGATTCTATCATAATGTCATATTAATCGAatgaaaagaaa
tcaaaattgaacataaaaatcaatcatATTTTAGTGATCAAAATTGCCAT
CcccataaatttcaaaaatatttctaatattCCATCCTTAACCGTTCATC
TCATTTTTTCTTTCCTGCTTCTGGCAATCTTGAAAACCCAATAACAAACT
TTTTCCGGCAAAGCTAACAAGATGAGTCTTATCATTTCATGCGATGGGTA
TCCACATGCAATAGGGGCAACACCAAGGGTTCGAAGAGCTGATGCAACAT
AATCTTGAGGAGTCGGGATAGTGGGAGCTGGTCTCACTTTGGACATCTTA
GAAGAAACATACATTGTGGTCAAAACTTGGTGATCGACGATCCCTTGACA
TTCTAAACGTAGCGTTTCAGCCATCTTCAATACAAATGATTTAGTAGAGG
AATAAACATTTGCCATTCCAGATTTCAAGAAGACTGTTCCAGACGAGATA
TGAACAATAGCGCCACGCCCTCTTTTGACCATTCCACCTTGAAGCATGTG
TGTCATACGGACCACGTTGAACATATTTACTTTCATGATGTTAGAAAGTC
GATCGTGATCCAAATCGTGGAGCATTTTCAAAGGGCCACCATAAGCCATT
CCAACGTTATTGATCAAAATACCAATATCCAAACCATTCAGctcagaagc
cattatttcatAAGCTTTTTCATCGTCAATATTACAAaagtcatgttgaa
taattttcGTTTCAACATTACTAGATTCTTTGATTTCAGAAGCCAATTGA
TTCAACTTTTCCACATTACGGCTGATGAGAACAACATTGAGTCCTTTAGA
TGCAAGTTGTTTAGCATATTCTTTACCGATTCCATCAGTACAACCCGTCA
CTACTGCCCATTGACCATATTCCTTCAAATTCTTACGAAAATAAGGGATG
CGAGTCAAGTAATAAGTACGAACGATAAACCAAGTGTATGAAACAATATG
GTATACAATGTACATCAAACATAACCAGCCAAGATAGACCAAGTATGTTT
CTTCCATTTTCTTcctgtttttaattttatttatctgcaatgaaaacaaa
aatattatataCCATGGATTCTTGcaccttttttttaaatacattagatg
cttttttttataagaatagtgtactttcgatgagggtcaagtatttttaa
gaaattgccaaaattgagggtgaaatattcttaacgtattcttaattttt
cagactttttttacaaacatgagaaatgatcaatttgagagttttgtact
tttgaatgaacatttggagctaaaattacatttctgtcTAACAAAGTaag
cagtttttttttattaaccaaatacaaaatgacagtattcttatcaaatt
ctgtgaaactcaccctgatattcttatagaagatattcttataaaaaaag
cgtgtaaatctTTTCTGGCCTCATTTTGATGCAGAGCGGCCATCTCCAAC
TCTATACATAAATATATTCCCAAAAGGTACTTTTACTAAATTAAATTATG
GAAAGAAAATGCTAACGTTTAAAAGTTGTAACTTTCTTTTGTGTATCATT
ATTTCAAAGATAAAAGAATGTGTGAATGGGTGAGTGGACggttgaatgaa
tgaatgactgGTTGgagaacgaacgaacgaacgaacgaacgaacgaacga
acgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaac
gaacgaacgaacgcaatcgaatggaaaaattgaaaaggaaattAATCTCT
TTTGCCCTTTGCATCGCTTCTGCTACTAAAAGTATATGTATGCACCAAAT
TGCTGATTTTCTCCGACAGACAAATCATGAATAAACGATGGAGTTCATGA
ACTGGAGTACCGCAAGCTATGGGCGCAATGCCGATAGTACGAAGAGCTGA
CGACACATAATTTTCAGAAGTAGGTGTTGCAAAATCAGGATTTGCTCCAG
TCATTTTTGTCGACACTTGCATAGTGGTGAGTACCTGGTGATCTACAACT
CCTTGACATTCTAAGCGTAACGATTCTGCTAGCTTCAAAACAAACTGTTT
GGAAGCCGTGTACGTGTTAGCCTTTGCACCTTTAAAGAATACAAGTCCAG
ACGAGATATGAACCATTGCGCCACGCCCTCTTTTGACCATTCCACCTTGA
ATCATGTGTGTCATTCGAACAGTTGAAAAATTGTTCACTTTTATGATGCT
TAACATTCGATTAAGGTTGAATTCGTCAAAAGCTTTTAGAGGACCACCAT
GAGCCATTCCAACGTTATTGACCAAAATTCCAATATCCAGATCCCTTAGG
TCAGAAGCCATTGATTCATAAGTTTTTTCATCGTCAATATTGCAAaagtc
atgttgaataattttcGTTTCAACATTACTAGATTCTTTGATTTCAGAAG
CCACTTGATTTAACTTTTCCACATTACGGCTGATGAGAACAACATTGAGT
CCTTGAGATGCAAGTTGTTTAGCATATTCTTTACCGATTCCATCAGTACA
ACCCGTCACTACTGCCCATTGACCATATTCCTTCAAATCCTTACGAAAAT
AAGGGATGCGAGTCAAGTAATAAGTACGAACGATAAACCAAGTGTATGAA
ACAATATGGTACGTGATGTACATCAAACATAACCAGCCAAGATAGACCAA
GACCAAGTATGTTTCTTCCATGGTGTAAGCTTGTCTAATGTTTTATTTAA
CTGTAACGAATAGAAGTATGTAatgcttttgaaaaaacaaacacccctgt
gtcacagacccgctgagtCCCCAGNAAACATAACCAGCCAAGATAGACCA
AGTATGTTTCTTCCATGTTCTTGctgtttatattttgttttatgTCTACA
ACGATAGCAAAATATAATAATCTCTATCTCGCACACTTACTGTCATGCAA
GCTTTATCAACCACGCTTTTAACTGAATTtactggaaaatttcaaaacga
CTAACTAACCAGTTCGGAAAATTGCATAGAATTGCAGCACTCCGAAATTC
CACAATTTTAGCTTTGTCAAATTCTACAACGTTAAATTTTGCAACTTTTC
CTgtccactgcaaaatattgcaaCTTTTGCTTTTGAAAAGGGATCTCAAA
ACATGTAAACTtcgcttttttcgaaaaaaattggtcGGCGTTCATAACTT
TCAATTACAAGCTTTAAAATTGAAAGCGTTGCGTAGAATTACAGCGCACC
CCTGGCGGAAGCGTTGCAAAAACCATCAACGTTGTGGAATATTACAGGGC
TGCAGAATTATGCAGTTTTCTCTTGCTGAACTGATGACCGTACAAAGGCT
TCCCGAGCGATTCGAATAGCAAATGTTGATATTTCTAACACCCGATTGTA
TGTAATCCATATTATCAAAAACGAAAGAGCACACGAGAATAAtattggtc
aattttagactaaAACTTGGAAGGTCAGCTTTTCGGAGTACTAATATATA
AATGATGTTTCGAATTAAAAATGATTAGATATTACAAGTATACAAAAATT
AGcgagtttttattttcatgttaCTTTTAATAACTGTTCTATAAATGGAA
TCACTTAACCACTCTGGTAAGCTGATCAGAATTAAACGAACGAATTCATG
AGCAGGATATCCACACGCAACATTAGTAAGACCAAGGGTACGTAAAGCTG
ATGAAACATAAGCATAAGCAGTTGGTGTTTTAAAATCGGGTTTACTATCT
GACATTTTCGTTGATACTTGCAGAGTTGTCAAGACCTGATGATCGACAAT
TCCTTGACATTCTAAGCGTAACGATTCTGCCAGTTTAACAACAAACGACT
TTGTGGCAGCATATGTATTAGCCATACCAGCTCTAGTGAAGACAGCTCCT
GATGAAATATGAACCATTGCGCCACGACCTCTTTCGACCATTCCACCTTG
AATCATATGTGTCATTCGAACCACAGAAAACATATTGACTTTCATGATGT
TTGCCATTCGAGTTAAATCGAATCCATGAAAGAGTTGTAAATCGTAGCCA
TAAGCCAATCCAACATTATTGATCAAAATACCAATATCCAAACCACTCAA
CTCAGAAGCCATTATTTTATAAGCTTTTTCATCGTCAATATTGCAAaagt
catgttgaataattttcGTTTCAACATTACTAGATTCTTTGATTTCAGAA
GCTACTTGATTTAACTTTTCCACATTACGGCTGATGAGAATAACATTGAG
TCCTTGAGATGCAAGTTGTTTAGCATATTCTTTACCTATTCCATCAGTAC
AACCCGTCACTACTGCCCATTGACCATATTCCTTCAAATTCTTACGAAAA
TAAGGGATACGAGTCAAATAATAAGTACGAACGATAAACCAAGTGTATGA
AACAATATGGTACGTGATGTACATCAAACATAACCAGCCAAGATAGACCA
AGTATGTTTCTTCCATGGTGTAAGCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000471-exon-sc0000002-1491911889:1189858..1190579 | TCONS_00000471-exon-sc0000002-1491911889:1189858..1190579 | Clytia hemisphaerica | exon |
TCONS_00000471-exon-sc0000002-1510915933:1189858..1190579 | TCONS_00000471-exon-sc0000002-1510915933:1189858..1190579 | Clytia hemisphaerica | exon |
TCONS_00000471-exon-sc0000002-1575043694:1189858..1190579 | TCONS_00000471-exon-sc0000002-1575043694:1189858..1190579 | Clytia hemisphaerica | exon |
TCONS_00000471-exon-sc0000002-1491911889:1193989..1194485 | TCONS_00000471-exon-sc0000002-1491911889:1193989..1194485 | Clytia hemisphaerica | exon |
TCONS_00000471-exon-sc0000002-1510915933:1193989..1194485 | TCONS_00000471-exon-sc0000002-1510915933:1193989..1194485 | Clytia hemisphaerica | exon |
TCONS_00000471-exon-sc0000002-1575043694:1193989..1194485 | TCONS_00000471-exon-sc0000002-1575043694:1193989..1194485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000002 | supercontig | sc0000002:1189858..1194485 + |
Blast
BLAST of TCONS_00000471 vs. Swiss-Prot (Human)
Match: DHB12 (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2) HSP 1 Score: 179.874 bits (455), Expect = 3.142e-52 Identity = 103/252 (40.87%), Postives = 163/252 (64.68%), Query Frame = -1
Query: 332 GQWAVVTGCTDGIGKEYAKQLASQGLNVILISRNVEKLNQVASEIKESSNVETKIIQHDFCNIDDEKAYKIMASELSGLDIGILINNVGLAYGYDLQLFHGFDLTRMANIMK----VNMFNVVRMTHMLQGGMVKRGRGAIVHISSGTVFLKSGMANVYSSTKSFVLKMAETLRLE--CQGIVDHQVLTTMYVSSKMSKVR-PAPTIPTPQDYVASALRTLGVAPIACGYPSHEMIRLILLALPEKVCYWVF 1066
G+WAVVTG TDGIGK YA++LA G+ V+LISR+ +KL+QV+SEIKE VET+ I DF + E Y + + L+GL+IGIL+NNVG++Y Y + F D+ + N++K +N+ +V +MT ++ GMV+R +GAI++ISSG+ L + +YS+TK+FV ++ L E +G+ VL +V++K++K+R P P+P+ +V SA++T+G+ GY H ++ I+ LP W++
Sbjct: 50 GEWAVVTGSTDGIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEKFKVETRTIAVDFAS---EDIYDKIKTGLAGLEIGILVNNVGMSYEYP-EYF--LDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYRSKGVFVQSVL-PYFVATKLAKIRKPTLDKPSPETFVKSAIKTVGLQSRTNGYLIHALMGSIISNLPS----WIY 290
The following BLAST results are available for this feature:
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