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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000470 ID=TCONS_00000470|Name=TCONS_00000470|organism=Clytia hemisphaerica|type=transcript|length=1291bp
CCTGAATCTTGGGGCGGTAGCACGGGGTCAAAAACCTTTCGTGAATCTTG
GTTAAACTCAGAAATGTCGATTCGAACTTaaccaatcaaacaaaaacaaa
gtaaTTAAAAAACTTCTGTTATTGCCCTATACTGCCAAGAcagttaaatg
gaaaaaaatctacTAATATTCATTTATTATAATTTGACTAAATTCCAAAA
TATATTCTACCTATCATGATTCTATCATAATGTCATATTAATCGAatgaa
aagaaatcaaaattgaacataaaaatcaatcatATTTTAGTGATCAAAAT
TGCCATCcccataaatttcaaaaatatttctaatattCCATCCTTAACCG
TTCATCTCATTTTTTCTTTCCTGCTTCTGGCAATCTTGAAAACCCAATAA
CAAACTTTTTCCGGCAAAGCTAACAAGATGAGTCTTATCATTTCATGCGA
TGGGTATCCACATGCAATAGGGGCAACACCAAGGGTTCGAAGAGCTGATG
CAACATAATCTTGAGGAGTCGGGATAGTGGGAGCTGGTCTCACTTTGGAC
ATCTTAGAAGAAACATACATTGTGGTCAAAACTTGGTGATCGACGATCCC
TTGACATTCTAAACGTAGCGTTTCAGCCATCTTCAATACAAATGATTTAG
TAGAGGAATAAACATTTGCCATTCCAGATTTCAAGAAGACTGTTCCAGAC
GAGATATGAACAATAGCGCCACGCCCTCTTTTGACCATTCCACCTTGAAG
CATGTGTGTCATACGGACCACGTTGAACATATTTACTTTCATGATGTTAG
AAAGTCGATCGTGATCCAAATCGTGGAGCATTTTCAAAGGGCCACCATAA
GCCATTCCAACGTTATTGATCAAAATACCAATATCCAAACCATTCAGctc
agaagccattatttcatAAGCTTTTTCATCGTCAATATTACAAaagtcat
gttgaataattttcGTTTCAACATTACTAGATTCTTTGATTTCAGAAGCC
AATTGATTCAACTTTTCCACATTACGGCTGATGAGAACAACATTGAGTCC
TTTAGATGCAAGTTGTTTAGCATATTCTTTACCGATTCCATCAGTACAAC
CCGTCACTACTGCCCATTGACCATATTCCTTCAAATTCTTACGAAAATAA
GGGATGCGAGTCAAGTAATAAGTACGAACGATAAACCAAGTGTATGAAAC
AATATGGTATACAATGTACATCAAACATAACCAGCCAAGATAGACCAAGT
ATGTTTCTTCCATGTTCTTGctgtttatattttgttttatg Run BLAST on NCBI transcript from alignment at sc0000002:1189802..1192901+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000470 ID=TCONS_00000470|Name=TCONS_00000470|organism=Clytia hemisphaerica|type=transcript|length=3100bp|location=Sequence derived from alignment at sc0000002:1189802..1192901+ (Clytia hemisphaerica)
CCTGAATCTTGGGGCGGTAGCACGGGGTCAAAAACCTTTCGTGAATCTTG
GTTAAACTCAGAAATGTCGATTCGAACTTaaccaatcaaacaaaaacaaa
gtaaTTAAAAAACTTCTGTTATTGCCCTATACTGCCAAGAcagttaaatg
gaaaaaaatctacTAATATTCATTTATTATAATTTGACTAAATTCCAAAA
TATATTCTACCTATCATGATTCTATCATAATGTCATATTAATCGAatgaa
aagaaatcaaaattgaacataaaaatcaatcatATTTTAGTGATCAAAAT
TGCCATCcccataaatttcaaaaatatttctaatattCCATCCTTAACCG
TTCATCTCATTTTTTCTTTCCTGCTTCTGGCAATCTTGAAAACCCAATAA
CAAACTTTTTCCGGCAAAGCTAACAAGATGAGTCTTATCATTTCATGCGA
TGGGTATCCACATGCAATAGGGGCAACACCAAGGGTTCGAAGAGCTGATG
CAACATAATCTTGAGGAGTCGGGATAGTGGGAGCTGGTCTCACTTTGGAC
ATCTTAGAAGAAACATACATTGTGGTCAAAACTTGGTGATCGACGATCCC
TTGACATTCTAAACGTAGCGTTTCAGCCATCTTCAATACAAATGATTTAG
TAGAGGAATAAACATTTGCCATTCCAGATTTCAAGAAGACTGTTCCAGAC
GAGATATGAACAATAGCGCCACGCCCTCTTTTGACCATTCCACCTTGAAG
CATGTGTGTCATACGGACCACGTTGAACATATTTACTTTCATGATGTTAG
AAAGTCGATCGTGATCCAAATCGTGGAGCATTTTCAAAGGGCCACCATAA
GCCATTCCAACGTTATTGATCAAAATACCAATATCCAAACCATTCAGctc
agaagccattatttcatAAGCTTTTTCATCGTCAATATTACAAaagtcat
gttgaataattttcGTTTCAACATTACTAGATTCTTTGATTTCAGAAGCC
AATTGATTCAACTTTTCCACATTACGGCTGATGAGAACAACATTGAGTCC
TTTAGATGCAAGTTGTTTAGCATATTCTTTACCGATTCCATCAGTACAAC
CCGTCACTACTGCCCATTGACCATATTCCTTCAAATTCTTACGAAAATAA
GGGATGCGAGTCAAGTAATAAGTACGAACGATAAACCAAGTGTATGAAAC
AATATGGTATACAATGTACATCAAACATAACCAGCCAAGATAGACCAAGT
ATGTTTCTTCCATTTTCTTcctgtttttaattttatttatctgcaatgaa
aacaaaaatattatataCCATGGATTCTTGcaccttttttttaaatacat
tagatgcttttttttataagaatagtgtactttcgatgagggtcaagtat
ttttaagaaattgccaaaattgagggtgaaatattcttaacgtattctta
atttttcagactttttttacaaacatgagaaatgatcaatttgagagttt
tgtacttttgaatgaacatttggagctaaaattacatttctgtcTAACAA
AGTaagcagtttttttttattaaccaaatacaaaatgacagtattcttat
caaattctgtgaaactcaccctgatattcttatagaagatattcttataa
aaaaagcgtgtaaatctTTTCTGGCCTCATTTTGATGCAGAGCGGCCATC
TCCAACTCTATACATAAATATATTCCCAAAAGGTACTTTTACTAAATTAA
ATTATGGAAAGAAAATGCTAACGTTTAAAAGTTGTAACTTTCTTTTGTGT
ATCATTATTTCAAAGATAAAAGAATGTGTGAATGGGTGAGTGGACggttg
aatgaatgaatgactgGTTGgagaacgaacgaacgaacgaacgaacgaac
gaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacga
acgaacgaacgaacgaacgcaatcgaatggaaaaattgaaaaggaaattA
ATCTCTTTTGCCCTTTGCATCGCTTCTGCTACTAAAAGTATATGTATGCA
CCAAATTGCTGATTTTCTCCGACAGACAAATCATGAATAAACGATGGAGT
TCATGAACTGGAGTACCGCAAGCTATGGGCGCAATGCCGATAGTACGAAG
AGCTGACGACACATAATTTTCAGAAGTAGGTGTTGCAAAATCAGGATTTG
CTCCAGTCATTTTTGTCGACACTTGCATAGTGGTGAGTACCTGGTGATCT
ACAACTCCTTGACATTCTAAGCGTAACGATTCTGCTAGCTTCAAAACAAA
CTGTTTGGAAGCCGTGTACGTGTTAGCCTTTGCACCTTTAAAGAATACAA
GTCCAGACGAGATATGAACCATTGCGCCACGCCCTCTTTTGACCATTCCA
CCTTGAATCATGTGTGTCATTCGAACAGTTGAAAAATTGTTCACTTTTAT
GATGCTTAACATTCGATTAAGGTTGAATTCGTCAAAAGCTTTTAGAGGAC
CACCATGAGCCATTCCAACGTTATTGACCAAAATTCCAATATCCAGATCC
CTTAGGTCAGAAGCCATTGATTCATAAGTTTTTTCATCGTCAATATTGCA
AaagtcatgttgaataattttcGTTTCAACATTACTAGATTCTTTGATTT
CAGAAGCCACTTGATTTAACTTTTCCACATTACGGCTGATGAGAACAACA
TTGAGTCCTTGAGATGCAAGTTGTTTAGCATATTCTTTACCGATTCCATC
AGTACAACCCGTCACTACTGCCCATTGACCATATTCCTTCAAATCCTTAC
GAAAATAAGGGATGCGAGTCAAGTAATAAGTACGAACGATAAACCAAGTG
TATGAAACAATATGGTACGTGATGTACATCAAACATAACCAGCCAAGATA
GACCAAGACCAAGTATGTTTCTTCCATGGTGTAAGCTTGTCTAATGTTTT
ATTTAACTGTAACGAATAGAAGTATGTAatgcttttgaaaaaacaaacac
ccctgtgtcacagacccgctgagtCCCCAGNAAACATAACCAGCCAAGAT
AGACCAAGTATGTTTCTTCCATGTTCTTGctgtttatattttgttttatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000470-exon-sc0000002-1491911889:1189802..1191027 | TCONS_00000470-exon-sc0000002-1491911889:1189802..1191027 | Clytia hemisphaerica | exon |
| TCONS_00000470-exon-sc0000002-1510915933:1189802..1191027 | TCONS_00000470-exon-sc0000002-1510915933:1189802..1191027 | Clytia hemisphaerica | exon |
| TCONS_00000470-exon-sc0000002-1575043694:1189802..1191027 | TCONS_00000470-exon-sc0000002-1575043694:1189802..1191027 | Clytia hemisphaerica | exon |
| TCONS_00000470-exon-sc0000002-1491911889:1192837..1192901 | TCONS_00000470-exon-sc0000002-1491911889:1192837..1192901 | Clytia hemisphaerica | exon |
| TCONS_00000470-exon-sc0000002-1510915933:1192837..1192901 | TCONS_00000470-exon-sc0000002-1510915933:1192837..1192901 | Clytia hemisphaerica | exon |
| TCONS_00000470-exon-sc0000002-1575043694:1192837..1192901 | TCONS_00000470-exon-sc0000002-1575043694:1192837..1192901 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1189802..1192901 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00000470 vs. Swiss-Prot (Human)
Match: DHB12 (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2) HSP 1 Score: 181.03 bits (458), Expect = 1.909e-52 Identity = 103/249 (41.37%), Postives = 160/249 (64.26%), Query Frame = -2
Query: 388 GQWAVVTGCTDGIGKEYAKQLASKGLNVVLISRNVEKLNQLASEIKESSNVETKIIQHDFCNIDDEKAYEIMASELNGLDIGILINNVGMAYGGPLKMLHDLDHDR-LSNIMKVNMFNVVRMTHMLQGGMVKRGRGAIVHISSGTVFLKSGMANVYSSTKSFVLKMAETLRLE--CQGIVDHQVLTTMYVSSKMSKVR-PAPTIPTPQDYVASALRTLGVAPIACGYPSHEMIRLILLALPEKVCYWVF 1122
G+WAVVTG TDGIGK YA++LA G+ VVLISR+ +KL+Q++SEIKE VET+ I DF + E Y+ + + L GL+IGIL+NNVGM+Y P L D D + ++ +N+ +V +MT ++ GMV+R +GAI++ISSG+ L + +YS+TK+FV ++ L E +G+ VL +V++K++K+R P P+P+ +V SA++T+G+ GY H ++ I+ LP W++
Sbjct: 50 GEWAVVTGSTDGIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEKFKVETRTIAVDFAS---EDIYDKIKTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYRSKGVFVQSVL-PYFVATKLAKIRKPTLDKPSPETFVKSAIKTVGLQSRTNGYLIHALMGSIISNLPS----WIY 290
The following BLAST results are available for this feature:
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