TCONS_00000464 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000464
Unique NameTCONS_00000464
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1919

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000464 ID=TCONS_00000464|Name=TCONS_00000464|organism=Clytia hemisphaerica|type=transcript|length=1919bp
CCTGGGTACCTATTCAGTATGATTCCTttgaacaaaagaagaaaaggaaa
aggTTTGGCAGTGGAAAATTCATATAAAACCTTCTTGAACTAGGACCATG
AAGAACATTTATCATTTCAAAAACTTGCTTAACTGAGAGAGAAGAAGTGT
ATTCTAGAAATGAAGTTATTGGCATCTTTGGGATTTGTCCTGCTCATTGC
AGCTCTTCAAGCAGATGCTGCTGAAAAATGTCAGTCAGAGGTGGTGGTCA
CCTTAGATTTATCAGATACAATCACCatagaagaattgaagcaagtTAAA
AACTTTGTCAAAAATGTCGGTAAAGAACTCTCCAAAAATAAAGATAACCG
AGTTGGAGTGGCCTCTTTTGCTGAGACAGCAAAATCTGAAGCTGAATGTT
CACAAGGTACAATCAGATATGATCAATTCTCATCACAAGTCAATGCAATC
CAAAAATATGGTGAATTTACCAATATTGAGGCTGGTTTATTGAAAGCTGA
AGCTATGTTAGATCGCGCAGGATGCTCCTTGAGTCGACCGGGACGTCATA
TCATCCTCTTGGTTTCTGATGGTAATGGCAACTATGGTTATGAATCTTCA
TTAATGCGAGAAGCTGAAAGAATCAGAAATAAAGGGatcaaaattttctc
acttGGTATCCAGAACCAACATTACCGCGAAGGTGTCTTGACTCGAATCT
CTGGTCATTCTGAATACGTCAAACCAGTTGCTGGTTTTGAATCTTTGAAA
GATATCGACTTCCGACAAATCATCGACAAAATCTCATGTTTTGCCAACGT
TGTCAAACCAACAGCAAAAATAACCACAACTACTCCTAAACCAACAACAA
CGACAACCGACGAGCCAACGACAACCACCGACTATTACACAACAACTACC
GAAGAACCAACGACAACCACCGACTATTACACAACAACCACCGAGGAGCC
AACGACAACCACCGAAGAAATAACGACAACGACCGAAGAGCCAACAACAA
CCACCGAATACTACACAACAACGACCGAGGAACCAACGACAACGACCGAA
GAAATAACGACAACAACCGAGGAACCAACGACCACCGACTATTACACGAC
AACCACCGAACCAATCACGACTACCGAAGaaatcacaacaacaacaacaa
agaaacCCATGCCAGTACCAAAAACATGCGATTGTGTTATTCCAAAAGAC
TTCATGCCATGCTTAACCTGGACCAAAGCTGATATCTTGACCAACTTCGA
GGGTGACTGTGTTGTTGACAAGTTTAAGAAAGCTTTGGAATACATCAACC
ACCGTGCAATGGCCATCGTCGGCAAATTGCTTGCATTCAGACAATGTCAA
AAACACATTCAAGATCACATCATCACCACCTCCATCAAACAATTCGGTTC
AGGACTTCCTAGTTCACCAATCATTGACAAGTCTTCAGTATTGCAGAGAT
TGTTCTTAAAAGAATCACAATGTGAATTTAACATTCGTGGTCGTTTGATG
CAATGGAAATTACAATTGATGACTGTCAGACAAATGATTGAACATGAAAT
CTTGTTCCAACAAAATGGATTCTTCAGTGCTTTTGACTccGTTCCATCTG
GTAAAGTGAACACTGGTGCATTGTTGAagaaaatgatgatgatgaagaaa
aaataaattaccaaaaaaatgaaaatgaaactttttgaaaagtcaCGATG
TCTAATTTATTAATTAGTTATTATTATGAATGAAGACTAAAGAAATTGtt
ataaaatcttattaatttatcaacacaaaacaaaaattattttttatatg
cattttatacttttacttgcattaatttttttgaaaaaataaaattttat
ttatttgcaatttaaaaaaaatatttctgttAGATGAGATTCTTAgttca
tgaaaaataaagatcttgc
Run BLAST on NCBI

transcript from alignment at sc0000002:1099446..1103490+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000464 ID=TCONS_00000464|Name=TCONS_00000464|organism=Clytia hemisphaerica|type=transcript|length=4045bp|location=Sequence derived from alignment at sc0000002:1099446..1103490+ (Clytia hemisphaerica)
CCTGGGTACCTATTCAGTATGATTCCTttgaacaaaagaagaaaaggaaa
aggTTTGGCAGTGGAAAATTCATATAAAACCTTCTTGAACTAGGACCATG
AAGAACATTTATCATTTCAAAAACTTGCTTAACTGAGAGAGAAGAAGTGT
ATTCTAGAAATGAAGTTATTGGCATCTTTGGGATTTGTCCTGCTCATTGC
AGCTCTTCAAGCAGGTATGCATNTTGAAAATGAAGTTATTGGCATCTTTG
GGATTTGTCCTGCTCATTGCAGCTCTTCAAGCAGGTATGCATGGTTAATA
AATGAACtcattcgaaaaaaaacttgacCCCAGAGATATTTTTGTTCTCC
TGACTAAAACAATGTGATAAGTGTTTCTCCTCGGTGTCTCGTCGATACTA
GTACCTCGACCAAAagccaaatatttcattttcaccaCGCAAAAAGCGAT
GGTCGATATTTAAATTAGTAGAGAGAATAATAATAAGGCATTTAAAATGT
CTTTTTGGGGGAAGGCATTCATAACGAAGTTATGACTTAGTTTATGACTA
GTTTATCAAGTAAGTTATCAGAGATCGGCAACCTTGTAAGCACTTCGATT
CTCTCTAAAATCACATGATCTCGAGATACAGACAACTCTCTCTCTAATCC
GACCCTTAATAGTTCGAATCTTTATGTAATTCGAAGTGAAACATTGGTTC
CCACAGTCAGAAGGTAGTGTTAAATTCTCTATTtaattcaaatatttcct
aAGGCGAAAGGatttcttggtcccttgaagatcgaattagagagtcaaCT
ACGATGATTTAATAAGAAGTCTAATTGATTCTTTGTATACTAATTACCTA
GATGCTGCTGAAAAATGTCAGTCAGAGGTGGTGGTCACCTTAGATTTATC
AGATACAATCACCatagaagaattgaagcaagtTAAAAACTTTGTCAAAA
ATGTCGGTAAAGAACTCTCCAAAAATAAAGATAACCGAGTTGGAGTGGCC
TCTTTTGCTGAGACAGCAAAATCTGAAGCTGAATGTTCACAAGGTACAAT
CAGATATGATCAATTCTCATCACAAGTCAATGCAATCCAAAAATATGGTG
AATTTACCAATATTGAGGCTGGTTTATTGAAAGCTGAAGCTATGTTAGAT
CGCGCAGGATGCTCCTTGAGTCGACCGGGACGTCATATCATCCTCTTGGT
TTCTGATGGTAATGGCAACTATGGTTATGAATCTTCATTAATGCGAGAAG
CTGAAAGAATCAGAAATAAAGGGatcaaaattttctcacttGGTATCCAG
AACCAACATTACCGCGAAGGTGTCTTGACTCGAATCTCTGGTCATTCTGA
ATACGTCAAACCAGTTGCTGGTTTTGAATCTTTGAAAGATATCGACTTCC
GACAAATCATCGACAAAATCTCATGTTTTGCCAACGTTGTCAAACCAACA
GCAAAAATAACCACAACTACTCCTAAACCAACAACAACGACAACCGACGA
GCCAACGACAACCACCGACTATTACACAACAACTACCGAAGAACCAACGA
CAACCACCGACTATTACACAACAACCACCGAGGAGCCAACGACAACCACC
GAAGAAATAACGACAACGACCGAAGAGCCAACAACAACCACCGAATACTA
CACAACAACGACCGAGGAACCAACGACAACGACCGAAGAAATAACGACAA
CAACCGAGGAACCAACGACCACCGACTATTACACGACAACCACCGAACCA
ATCACGACTACCGAAGaaatcacaacaacaacaacaaagaaacCCATGCC
AGTACCAAAAAGTAGGAAATGCATTTATGTTTTCACTCACGCAACACGTC
TTTATCTACAACATAAGTTAAACGTAGGCAATCACCTGTTTCAATAATTT
CCTCCACTTAGATTTCACAACCtagattttaatttcttaattccaaattt
ttattatttctagCATGCGATTGTGTTATTCCAAAAGACTTCATGCCATG
CTTAACCTGGACCAAAGCTGATATCTTGACCAACTTCGAGGGTAAGTCTT
CTTTCCACAACCCATCATTTTATTAAATCCTTCTTACATGCCTCATTTTA
ATGTGACGCTCCTACCACACTCTTTACTTCGGTGCAAACCTTTTTCTACA
GCCCTTTGtatctttttattgaagttGTTCCACTTACATTCCCTTACACT
TTCACATTGGTGTAAAACCATCCATATCCCTTATATATTGTGCAAAACCA
ATTCCTCATCCTTAACATCGGTTGGTGTTTATGTCTTTTTAAATCCTTTA
TATTGGTGAAAAACTCTGACCACATGCCTTATTACCTTGGAGTAAAACCT
TCTCTACCTAACTTACATTGGTCTAAAACCCTCTCTTCGTCCGTTACGTT
GGATTGGTGTAAATTTCTTTCCACACCCTTTACATTGGTGTAAATCTCTT
TCCACATTCCTTACATTGATGTAAAACACTCTCTAAACTCCTTTCGTGGA
TGCAAAACCATTTCATAACCCCTTACATTGGTGTAAATTTCTTTCCACAC
CCTTTACATTGGTGTAAATCTCTTTCCACATTCCTTACATTGTTGTAAAA
CCCTCTCTTAAATTCCTTCTTTGGATACAAAACCATTTCATAACCCCTTA
CATTGGTGTAAATTTATTTCCACACCCTTTACATTCGTTACAGGTGACTG
TGTTGTTGACAAGTTTAAGAAAGCTTTGGAATACATCAACCACCGTGCAA
TGGCCATCGTCGGCAAATTGCTTGCATTCAGACAATGTCAAAAACACATT
CAAGATCACATCATCACCACCTCCATCAAACAATTCGGTTCAGGACTTCC
TAGTTCACCAATCATTGACAAGTCTTCAGTATTGCAGAGATTGTTCTTAA
AAGAATCACAATGTGAATTTAACATTCGTGGTCGTTTGATGCAATGGAAA
TTACAATTGATGACTGTCAGACAAATGATTGAACATGAAATCTTGTTCCA
ACAAAATGGATTCTTCAGTGCTTTTGACTGTAAGTAGACTAATAGATTGG
GCTATGCCAGAAAAtatccgtacatggggggggcTTGGGttgaggatata
ttgtccgggaggtagcgaaaaatcatcaaaatttgcttgTCCGTaaggta
aatttgctctgtccggggggtcaactgatgcttgtccggggggtaaaacc
tGTTGTCCGGGGGAGggcaaaagtcactttgtccagGCGGTAAATCACTG
ataattgttatatcctccatctccccatattcaaattttttctggaaaag
cccatttttagTTAGAATTATCAAGATTGCAAGCGTTGGACTCCCTTTGA
TTCATATTTGGAATAGGCAAGCGCTCGTTGTGAACTGGTCCGAAACGTAA
TGTATTTGTGCCATTTTTCAGGTCTCCCtttatcaaaactaatcatcCAT
GTCTATCAAACAGAAAGGGTGTCTTTAATAGATTGCACTATCAATGAATG
AATTACGTAACAACTATGATAAATTGAACATAAGCTTTATGATGAAGAAA
GGAGGTGCGCTTTAATGCTCACACGGTAGAACAAAGAAAAGTATTTCGTA
AAACatatttttgctttgttttgaaaatgctATGTAAGCAAATGATAGGT
AAGTTAAATGTAGAATTTGTCCTTTAACGGGTTCaggaaatcaatttttt
tcttttcttttcagccGTTCCATCTGGTAAAGTGAACACTGGTGCATTGT
TGAagaaaatgatgatgatgaagaaaaaataaattaccaaaaaaatgaaa
atgaaactttttgaaaagtcaCGATGTCTAATTTATTAATTAGTTATTAT
TATGAATGAAGACTAAAGAAATTGttataaaatcttattaatttatcaac
acaaaacaaaaattattttttatatgcattttatacttttacttgcatta
atttttttgaaaaaataaaattttatttatttgcaatttaaaaaaaatat
ttctgttAGATGAGATTCTTAgttcatgaaaaataaagatcttgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000293XLOC_000293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000464-exon-sc0000002-1491911889:1099446..1099659TCONS_00000464-exon-sc0000002-1491911889:1099446..1099659Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1510915933:1099446..1099659TCONS_00000464-exon-sc0000002-1510915933:1099446..1099659Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1575043694:1099446..1099659TCONS_00000464-exon-sc0000002-1575043694:1099446..1099659Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1491911889:1100297..1101256TCONS_00000464-exon-sc0000002-1491911889:1100297..1101256Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1510915933:1100297..1101256TCONS_00000464-exon-sc0000002-1510915933:1100297..1101256Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1575043694:1100297..1101256TCONS_00000464-exon-sc0000002-1575043694:1100297..1101256Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1491911889:1101409..1101486TCONS_00000464-exon-sc0000002-1491911889:1101409..1101486Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1510915933:1101409..1101486TCONS_00000464-exon-sc0000002-1510915933:1101409..1101486Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1575043694:1101409..1101486TCONS_00000464-exon-sc0000002-1575043694:1101409..1101486Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1491911889:1102139..1102474TCONS_00000464-exon-sc0000002-1491911889:1102139..1102474Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1510915933:1102139..1102474TCONS_00000464-exon-sc0000002-1510915933:1102139..1102474Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1575043694:1102139..1102474TCONS_00000464-exon-sc0000002-1575043694:1102139..1102474Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1491911889:1103160..1103490TCONS_00000464-exon-sc0000002-1491911889:1103160..1103490Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1510915933:1103160..1103490TCONS_00000464-exon-sc0000002-1510915933:1103160..1103490Clytia hemisphaericaexon
TCONS_00000464-exon-sc0000002-1575043694:1103160..1103490TCONS_00000464-exon-sc0000002-1575043694:1103160..1103490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1099446..1103490 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.621002	4.04733	0.419736	3.57724	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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