TCONS_00000458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000458
Unique NameTCONS_00000458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1974

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000458 ID=TCONS_00000458|Name=TCONS_00000458|organism=Clytia hemisphaerica|type=transcript|length=1974bp
TCTCaattaaacaagaaaaacataaacaaaaaaaatctccTATCTTGCCC
GGAAGcgttttcattgtttttgactCGGTACCAATCTACTTGAACAATTA
TGTGTCACGGCTGACTTATTATACAGCTATAAAATGACTCGTTGATATCA
TATTAAACTGTCATTAGAAATTATACTATCATTAACTTAACAAGTATCCA
GAGAGAAAGAGAAAATCAAGAGTGAATATAAAAATTGTGATTTCAGCCTG
CGTGTGTTCTTGGCTTTAATTTTGCAAGACATCATTTGTATATGTACGTA
GATATTTTTGGTGTAAACGATTGAGTGcagattttcaaatttgggACACA
CCCATAATTCATTGCGATGATTGAGATGAAAATGTCTCCCCACCAACAAG
CAGTGCTATCACAGCAAGTTCCGAACATGAGTTCATTTTTACCGCCCAGT
AAAGCACCGGAGGCGTACCGCCCTTTAAACTACACGCCAACGTCATTCGT
AACCAACTTCAAAGAAATGTCACAACAAATCGActctaacaacaacaaca
acaacaacaataaccCTCATGAAAGCGAAGGAAAATTCTCACCTCGACCA
GCGACGCAATTTTCACCAATGGGCGATTTACGATCACACCCTTCGACGCA
AGATACACATCCATTCAAAACCTTCGACGACTCGAAATCCTTTTTGAATA
ATAATACGCCAAATGGTTCAATGCCCGAACAAGATTCAATTTCATCGTCA
CTACAGTCTTTCCACTCTAGTGGACTTCCAACATCATATACTTCGTCTTA
CAATAACAACTCTATGCAAACGACCCTCTCTTCGCCGTCAAGTATCACGT
CAAATATGTCGAGAAGCTTTTCATCCTCATCTTACGTTAAGCAGGAATCa
gatgaagaagatgaaggAGATCTTACGCAATCGAAGAACGGTAAAGGTGG
AAAATTACCTCGAAAACCACGAACAATCTTCACTAGTCAACAGTTACGCG
AACTCAACCGTGCTTTCGAACGCACGCATTACCTCTCGTTACCTGAACGC
GCAGAATTAGCACACGCACTCGGTTTAACTCAAACCCAAATCAAAATCTG
GTTCCAAAACAAGAGATCTAAATTCAAGAAAATCATCAAAGCTAATGGAG
GACAAATGCCACCGCCATCAAGCCTCGTTTCTGGTGGCAATCCTGGTTTA
TGGCCGTCTGGTTATGGTGAGAAAAGCTTTGGCGGACCACCAATGCCACA
CTTGAGTCCATTCTCACCACCACCATCATCGCATAGTTCGGTACCCGGTG
ATTCTTGGTACTACCGGATGCAATCGGCCGGTGGATACGGAAGTCACGAA
ACCATGTTTCCATACGGTGGCACAAGCGGAACTGATGTTCGAACAACTCG
GCCTAATTTCTCTTATCATATGTAGTGTTTAAACTAATCACCTTTCTTAA
CCCTTAGTAACTGTCTGTTTCTGTCCtgagtatatatttttttcactaaa
aattcacaaattttagttttatctttttttttaacttgtgTTCtacgaaa
attgtaaaaaaaaaagtaacTTCAATATTATATTTTGGAAACACTTTTAA
TCATTGTATAGATGGACAAGTGAAAATATCGAATAGTTTATTTTGTTCgc
tattttaagttttttttgaagagcaaatatttttTAGCCATGGAAATAGT
TTAAAAATGGTATCGAATTAGTTTTTTTGTATATATGTACATAAATTATC
TTACTACAACACACAGTATCAATATTttacaatgaaataaaaatccGAAA
GAACGAAATAGCTAAACCTCTCATACAACTATGTTCCAGCTTCTAGTGTT
TCGATCGAATTTTTCCCCTCGTTAACTctattcaaactaggcttttagga
GTGGTTCCTGTAACAACCCTTAACTTTATCTATTGGGTCTTTTTGGACGA
AATTTGGTACATAAGATCTTTGTC
Run BLAST on NCBI

protein sequence of Dll1 distalless homeodomain protein

>TCONS_00000458-protein ID=TCONS_00000458-protein|Name=Dll1 distalless homeodomain protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MIEMKMSPHQQAVLSQQVPNMSSFLPPSKAPEAYRPLNYTPTSFVTNFKE
MSQQIDSNNNNNNNNNPHESEGKFSPRPATQFSPMGDLRSHPSTQDTHPF
KTFDDSKSFLNNNTPNGSMPEQDSISSSLQSFHSSGLPTSYTSSYNNNSM
QTTLSSPSSITSNMSRSFSSSSYVKQESDEEDEGDLTQSKNGKGGKLPRK
PRTIFTSQQLRELNRAFERTHYLSLPERAELAHALGLTQTQIKIWFQNKR
SKFKKIIKANGGQMPPPSSLVSGGNPGLWPSGYGEKSFGGPPMPHLSPFS
PPPSSHSSVPGDSWYYRMQSAGGYGSHETMFPYGGTSGTDVRTTRPNFSY
HM
Run BLAST on NCBI

transcript from alignment at sc0000002:1019432..1025647+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000458 ID=TCONS_00000458|Name=TCONS_00000458|organism=Clytia hemisphaerica|type=transcript|length=6216bp|location=Sequence derived from alignment at sc0000002:1019432..1025647+ (Clytia hemisphaerica)
TCTCaattaaacaagaaaaacataaacaaaaaaatctccTATCTTGCCCG GAAGcgttttcattgtttttgactCGGTACCAATCTACTTGAACAATTAT GTGTCACNCATAACAAACACATAAAAAAGGAAACAATgatttcgcaaaaa aaaaattcttcccaAAAAAATGCGCGCTTACATAACAACCaagcaatttt ttttgtaaaacggtGCGTATCTCAATTAAACgagaaaaacataaacaaaa aaaatctccTATCTTGCCCGGAAGcgttttcattgtttttgactCGGTAC CAATCTACTTGAACAATTATGTGTCACGGCTGACTTATTATACAGCTATA AAATGACTCGTTGATATCATATTAAACTGTCATTAGAAATTATACTATCA TTAACTTAACAAGTATCCAGAGAGAAAGAGAAAATCAAGAGTGAATATAA AAATTGTGATTTCAGCCTGCGTGTGTTCTTGGCTTTAATTTTGCAAGACA TCATTTGTATATGTACGTAGATATTTTTGGTGTAAACGATTGAGTGcaga ttttcaaatttgggACACACCCATAATTCATTGCGATGATTGAGATGAAA ATGTCTCCCCACCAACAAGCAGGTAAAcatatttgttttatttgacTCCT AAGGAACTGTTTTCCACAAGGGTTTTGCTCAGTAATCCTTGACTTCAACC TAGCGCTCTTGCATAAAACTTCAGTATAACCCCAACATTGCCTATTGTCT TGTAAATTAAGCAGCTTTCCACTTATAATCACCCACTTCAATATTTGGTG TTTTCCTAAAGGTAAATGTCAAATGTACTCCTTAAATTAGAAATATCTGT GGAATCTCCAAACGCAAATTTGCAAAAGTTatatattttcaatcaaatta aACCTTTCGCAAGTTTTTTTCCTATAATTGCTaataaaagttaaagtaaa agcTTATAATTATAGTAATTTTCCAACATTGATTTATAGTACTATTTCTA ATTGCATGTGAaattacaatatttttttcataattacaTGAAATTAATGA TCAATTAAAGTTTGCTTGACCTAGAAAAGACACAAATCTGCAAATATTCT GTATTTTGCACACAATTTTAGCGTTGCAAATGCTATTTTGCTATTTTGcg ggtttttgaaaaagttgcaaaaatttaagaaaataaaaggTAAAAATTGA AGTTTGTCTGGAAAGAATTAATTTTCATTAACATCATACTAAGTCTCAGC TTTCTTTTAATAAAACGGCTGAAATATTAGTGAATAATTACTTagatttc aatttcaataaagATTTTACTAAAGATATACAATGTCATCGCACCCAAAT TCGTGCTTCCTTAGTAGGGTTtggttaaaaaaatcatttattgtATAACG CCTTTTTAATGAGGAGAATAATTAAATCTGGCTTTTTCACAAGAATGTAA AGGTCATTAAAATTACGGAGAATGAATATTAATTACGTGCATTCCATTTG AAACAAAAGATACATTAAAGTTTGTTTGCAGAATCTTTTGTTGTCCTGCA GTAGTTGAATTTAAATTAATCTGGTAAAAAGCGGAGtgacaaaaattgga aaattttatttcatactTTTTGTGAACTTCTGGTGCAAGTTAACGGTAAT TACAGGTGAACTCAAATCTGAAGAATttgtgaaaataatttttggattGT TCATTCTTACAGTTTTAAGCTGATTTTTACTATTTTCGGCGCTCTTTTCT GTCTATTCGTGATTATTATGAGTGactaaattgaaaaatgtcaaaaataa agcaattatttttttaattgcttTGCGCGAAAGTTGCGCACTTTTCGAAA CAGGACAATTTAGATAAATCGCTTGGGACTTCTGATTTATGAAAGGTTGT TTGCAACAAatattaatttattttcaaattaattacgcgaaataattatt ttttcaataaaaaaatagaaatactcGATGAAGTTTTGCGGatgaaaagt taactttttatAGCAAATATAATATTCAGCGTTGAGAATTGTTGTGATGA AAACACAAACTGCGTAAGGAAAATCCCTCCAGTTTTTGTCTCAATCGAAA AGAAAAGAACTCTGAATCAGAtacagttaaaaaaaaactaaaacagtAAA ACGAAATATAAAATGGGCGAAAAATATACCAATGCCGTCTGTCATTTTCT CATGGTTATctcagaaaaaatatttgaagaaataCGCATAATACTCACTT TCCCCGATATTTTTATTCTAATATTTTCCCATCTTCGCacttcaaaataa taataatcacacaatgataatttttcaaacaaaaggtcaaaaagaacgtg ttgaaaaaaaacataatggcCTTCTATTGTTCGTATTATTCTATATTtat taataattaaaattaACGATAGTATAATTGTGTATAACTGGGCTTAAGGT TTTAAAACGATTTGTCATTAATTGAAGTTAACTACTCGAATTGATAAGAG GTCTTCCATtctgcagattttttttctaaaaattggtatgaaattttcat aaatttgtttataattattttgttAAACGGTACTATATATCACAGGTAGA TCATTAGTAATTGATTATTTTCATACTTAAGAATTACTTCGGTAATTATA TATGAGGAGGGGCAGCATAATGCTCTNGTTAACGGTAATTACAGGTGAAT TCAAATCTGAAGAATttgtgaaaataatttttggattGTTCATTCTTACA GTTTTAAGCTGATTTTTACTATTTTCGGCGCTCTTTTCTGTCTATTCGTG ATTATTATGAGTGactaaattgaaaaatgtcaaaaataaagcaattattt ttttaattgcttTGCGCGAAAGTTGCGCACTTTTCGAAACAGGACAATTT AGATAAATCGCTTGAGACTTCTGATTTATGAAAGGTTGTTTGCAACAAat attaatttattttcagATTAATTACgcgaaataattattttttcaataaa aaaattgaaatactcgATGAAGTTTTGCGGatgaaaagttaactttttat AGCAAATATAATATTCAGCGTTGAGAATTGTTGTGATGAAAACACAAACT GCGTAAGGAAAATCCCTCCAGTTTTTGTCTCAATCGAAAAGAAAAGAACT CTGAATCAGAtacagttaaaaaaaaactaaaacagtAAAACGAAATATAA AATGGGCGAAAAATATACCAATGCCGTCTGTCATTTTCTCATGGTTATct cagaaaaaatatttgaagaaataCGCATAATACTCACTTTCCCCGATATT TTTATTCTAATATTTTCCCATCTTCGCacttcaaaataataataatcaca caatgataatttttcaaacaaaaggtcaaaaagaacgtgttgaaaaaaaa cataatggcCTTCTATTGTTCGTATTATTCTATATTtattaataattaaa attaACGATAGTATAATTGTGTATAACTGGGCTTAAGGTTTTAAAACGAT TTGTCATTAATTGAAGTTAACTACTCGAATTGATAAGAGGTCTTCCATtc tgcagattttttttctaaaaattggtatgaaattttcataaatttgttta taattattttgttAAACGGTACTATATATCACAGGTAGATCATTAGTAAT TGATTATTTTCATTCTTAAGAATTACTTCGGTAATTATATATGAGGAGGG GCAGCATAATGCTCCGTCAACCATCCAAAAATGAGAAATCTCTTAGTCCA ActaataaacaaaaattaatgtttaatTAATATTCTTTCTTCTATTTCAC AGTGCTATCACAGCAAGTTCCGAACATGAGTTCATTTTTACCGCCCAGTA AAGCACCGGAGGCGTACCGCCCTTTAAACTACACGCCAACGTCATTCGTA ACCAACTTCAAAGAAATGTCACAACAAATCGActctaacaacaacaacaa caacaacaataaccCTCATGAAAGCGAAGGAAAATTCTCACCTCGACCAG CGACGCAATTTTCACCAATGGGCGATTTACGATCACACCCTTCGACGCAA GATACACATCCATTCAAAACCTTCGACGACTCGAAATCCTTTTTGAATAA TAATACGCCAAATGGTTCAATGCCCGAACAAGATTCAATTTCATCGTCAC TACAGTCTTTCCACTCTAGTGGACTTCCAACATCATATACTTCGTCTTAC AATAACAACTCTATGCAAACGACCCTCTCTTCGCCGTCAAGTATCACGTC AAATATGTCGAGAAGCTTTTCATCCTCATCTTACGTTAAGCAGGAATCag atgaagaagatgaaggAGGTAAAATGTTTATTTATATTAAGGAGATAATA TTGACTTGTTGGAACTAAAATTATCTTCTTTGAATTTTAATTGACACTGA TATCTTTCATAACGATAATTTTTAGCAGGTTTTTAGCAGAGAAAAACGTC TTAGCTACATTGAACATTTTGCAGCAAAAATGTAGGAGGTTTTCCTTTAA TTTTCAATGAATGTCATTAACATGATTAGGAATAATTAGATGGGTTGGTA GCTCCTAATTTAATTGCATTTAACATTTGACGTTGGTCATGTTTTTTTCC CAAAGCTTAAAAATTGTGATAAGTCAAAATGATGCATTCAAACAATTCGC GATAAAGATCACCATTAAAGTTTTTAATCACCTCCTTGCCATAAATTATC ACAAAGATAATCAAAACATAAGAATTTCGTAAACAATCAACCATTTCTAT TTCCAGCGTTAATATCAGATAATTTCAATGATAAAATTATGAAACCTTGC ATGTgaaaaaaacacgaaaacaTGTCCTAACTTTTTCCTTAATGTTGTAT TTGTGGTAGAATGGGCGCCTTAATAAAACAGTTAATTGTCGACTTTGCAT TTGAGTAATGTTTTTCCGTTTTACGAAGAGAAAAAGTCTTAACGACCTGT GACCAATTTAAGACTTTTGAATAGCTATTAAAAAATACAGGACGTTAAAA TTAATGACCTCTTTTCATTACCTATTTgaaattgattatttttattgaaa ctttcctaatttggaAAAAAGACTTTCTCAAGTGGGTATATTGTTTTTAA TATCCGATAATTGTTGGAAAAATTAATgagtaattcttttcaattttttc atatcTTATAGATCTTACGCAATCGAAGAACGGTAAAGGTGGAAAATTAC CTCGAAAACCACGAACAATCTTCACTAGTCAACAGTTACGCGAACTCAAC CGTGCTTTCGAACGCACGCATTACCTCTCGTTACCTGAACGCGCAGAATT AGCACACGCACTCGGTTTAACTCAAACCCAAATCAAAATCTGGTTCCAAA ACAAGAGATCTAAATTCAAGAAAATCATCAAAGCTAATGGAGGACAAATG CCACCGCCATCAAGCCTCGTTTCTGGTGGCAATCCTGGTTTATGGCCGTC TGGTTATGGTGAGAAAAGCTTTGGCGGACCACCAATGCCACACTTGAGTC CATTCTCACCACCACCATCATCGCATAGTTCGGTACCCGGTGATTCTTGG TACTACCGGATGCAATCGGCCGGTGGATACGGAAGTCACGAAACCATGTT TCCATACGGTGGCACAAGCGGAACTGATGTTCGAACAACTCGGCCTAATT TCTCTTATCATATGTAGTGTTTAAACTAATCACCTTTCTTAACCCTTAGT AACTGTCTGTTTCTGTCCtgagtatatatttttttcactaaaaattcaca aattttagttttatctttttttttaacttgtgTTCtacgaaaattgtaaa aaaaaaagtaacTTCAATATTATATTTTGGAAACACTTTTAATCATTGTA TAGATGGACAAGTGAAAATATCGAATAGTTTATTTTGTTCgctattttaa gttttttttgaagagcaaatatttttTAGCCATGGAAATAGTTTAAAAAT GGTATCGAATTAGTTTTTTTGTATATATGTACATAAATTATCTTACTACA ACACACAGTATCAATATTttacaatgaaataaaaatccGAAAGAACGAAA TAGCTAAACCTCTCATACAACTATGTTCCAGCTTCTAGTGTTTCGATCGA ATTTTTCCCCTCGTTAACTctattcaaactaggcttttaggaGTGGTTCC TGTAACAACCCTTAACTTTATCTATTGGGTCTTTTTGGACGAAATTTGGT ACATAAGATCTTTGTC

Coding sequence (CDS) from alignment at sc0000002:1019432..1025647+

>TCONS_00000458 ID=TCONS_00000458|Name=TCONS_00000458|organism=Clytia hemisphaerica|type=CDS|length=3177bp|location=Sequence derived from alignment at sc0000002:1019432..1025647+ (Clytia hemisphaerica)
ATGATTGAGATGAAAATGTCTCCCCACCAACAAGCAGTGCTATCACAGCA
AGTTCCGAACATGAGTTCATTTTTACCGCCCAGTAAAGCACCGGAGGCGT
ACCGCCCTTTAAACTACACGCCAACGTCATTCGTAACCAACTTCAAAGAA
ATGTCACAACAAATCGActctaacaacaacaacaacaacaacaataaccC
TCATGAAAGCGAAGGAAAATTCTCACCTCGACCAGCGACGCAATTTTCAC
CAATGGGCGATTTACGATCACACCCTTCGACGCAAGATACACATCCATTC
AAAACCTTCGACGACTCGAAATCCTTTTTGAATAATAATACGCCAAATGG
TTCAATGCCCGAACAAGATTCAATTTCATCGTCACTACAGTCTTTCCACT
CTAGTGGACTTCCAACATCATATACTTCGTCTTACAATAACAACTCTATG
CAAACGACCCTCTCTTCGCCGTCAAGTATCACGTCAAATATGTCGAGAAG
CTTTTCATCCTCATCTTACGTTAAGCAGGAATCagatgaagaagatgaag
gAGATCTTACGCAATCGAAGAACGGTAAAGGTGGAAAATTACCTCGAAAA
CCACGAACAATCTTCACTAGTCAACAGTTACGCGAACTCAACCGTGCTTT
CGAACGCACGCATTACCTCTCGTTACCTGAACGCGCAGAATTAGCACACG
CACTCGGTTTAACTCAAACCCAAATCAAAATCTGGTTCCAAAACAAGAGA
TCTAAATTCAAGAAAATCATCAAAGCTAATGGAGGACAAATGCCACCGCC
ATCAAGCCTCGTTTCTGGTGGCAATCCTGGTTTATGGCCGTCTGGTTATG
GTGAGAAAAGCTTTGGCGGACCACCAATGCCACACTTGAGTCCATTCTCA
CCACCACCATCATCGCATAGTTCGGTACCCGGTGATTCTTGGTACTACCG
GATGCAATCGGCCGGTGGATACGGAAGTCACGAAACCATGTTTCCATACG
GTGGCACAAGCGGAACTGATGTTCGAACAACTCGGCCTAATTTCTCTTAT
CATATGTAGATGATTGAGATGAAAATGTCTCCCCACCAACAAGCAGTGCT
ATCACAGCAAGTTCCGAACATGAGTTCATTTTTACCGCCCAGTAAAGCAC
CGGAGGCGTACCGCCCTTTAAACTACACGCCAACGTCATTCGTAACCAAC
TTCAAAGAAATGTCACAACAAATCGActctaacaacaacaacaacaacaa
caataaccCTCATGAAAGCGAAGGAAAATTCTCACCTCGACCAGCGACGC
AATTTTCACCAATGGGCGATTTACGATCACACCCTTCGACGCAAGATACA
CATCCATTCAAAACCTTCGACGACTCGAAATCCTTTTTGAATAATAATAC
GCCAAATGGTTCAATGCCCGAACAAGATTCAATTTCATCGTCACTACAGT
CTTTCCACTCTAGTGGACTTCCAACATCATATACTTCGTCTTACAATAAC
AACTCTATGCAAACGACCCTCTCTTCGCCGTCAAGTATCACGTCAAATAT
GTCGAGAAGCTTTTCATCCTCATCTTACGTTAAGCAGGAATCagatgaag
aagatgaaggAGATCTTACGCAATCGAAGAACGGTAAAGGTGGAAAATTA
CCTCGAAAACCACGAACAATCTTCACTAGTCAACAGTTACGCGAACTCAA
CCGTGCTTTCGAACGCACGCATTACCTCTCGTTACCTGAACGCGCAGAAT
TAGCACACGCACTCGGTTTAACTCAAACCCAAATCAAAATCTGGTTCCAA
AACAAGAGATCTAAATTCAAGAAAATCATCAAAGCTAATGGAGGACAAAT
GCCACCGCCATCAAGCCTCGTTTCTGGTGGCAATCCTGGTTTATGGCCGT
CTGGTTATGGTGAGAAAAGCTTTGGCGGACCACCAATGCCACACTTGAGT
CCATTCTCACCACCACCATCATCGCATAGTTCGGTACCCGGTGATTCTTG
GTACTACCGGATGCAATCGGCCGGTGGATACGGAAGTCACGAAACCATGT
TTCCATACGGTGGCACAAGCGGAACTGATGTTCGAACAACTCGGCCTAAT
TTCTCTTATCATATGTAGATGATTGAGATGAAAATGTCTCCCCACCAACA
AGCAGTGCTATCACAGCAAGTTCCGAACATGAGTTCATTTTTACCGCCCA
GTAAAGCACCGGAGGCGTACCGCCCTTTAAACTACACGCCAACGTCATTC
GTAACCAACTTCAAAGAAATGTCACAACAAATCGActctaacaacaacaa
caacaacaacaataaccCTCATGAAAGCGAAGGAAAATTCTCACCTCGAC
CAGCGACGCAATTTTCACCAATGGGCGATTTACGATCACACCCTTCGACG
CAAGATACACATCCATTCAAAACCTTCGACGACTCGAAATCCTTTTTGAA
TAATAATACGCCAAATGGTTCAATGCCCGAACAAGATTCAATTTCATCGT
CACTACAGTCTTTCCACTCTAGTGGACTTCCAACATCATATACTTCGTCT
TACAATAACAACTCTATGCAAACGACCCTCTCTTCGCCGTCAAGTATCAC
GTCAAATATGTCGAGAAGCTTTTCATCCTCATCTTACGTTAAGCAGGAAT
CagatgaagaagatgaaggAGATCTTACGCAATCGAAGAACGGTAAAGGT
GGAAAATTACCTCGAAAACCACGAACAATCTTCACTAGTCAACAGTTACG
CGAACTCAACCGTGCTTTCGAACGCACGCATTACCTCTCGTTACCTGAAC
GCGCAGAATTAGCACACGCACTCGGTTTAACTCAAACCCAAATCAAAATC
TGGTTCCAAAACAAGAGATCTAAATTCAAGAAAATCATCAAAGCTAATGG
AGGACAAATGCCACCGCCATCAAGCCTCGTTTCTGGTGGCAATCCTGGTT
TATGGCCGTCTGGTTATGGTGAGAAAAGCTTTGGCGGACCACCAATGCCA
CACTTGAGTCCATTCTCACCACCACCATCATCGCATAGTTCGGTACCCGG
TGATTCTTGGTACTACCGGATGCAATCGGCCGGTGGATACGGAAGTCACG
AAACCATGTTTCCATACGGTGGCACAAGCGGAACTGATGTTCGAACAACT
CGGCCTAATTTCTCTTATCATATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000289XLOC_000289Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Dll1 distalless homeodomain proteinTCONS_00000458-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000458-exon-sc0000002-1491911889:1019432..1019452TCONS_00000458-exon-sc0000002-1491911889:1019432..1019452Clytia hemisphaericaexon
TCONS_00000458-exon-sc0000002-1510915933:1019432..1019452TCONS_00000458-exon-sc0000002-1510915933:1019432..1019452Clytia hemisphaericaexon
TCONS_00000458-exon-sc0000002-1575043694:1019432..1019452TCONS_00000458-exon-sc0000002-1575043694:1019432..1019452Clytia hemisphaericaexon
TCONS_00000458-exon-sc0000002-1491911889:1019672..1020053TCONS_00000458-exon-sc0000002-1491911889:1019672..1020053Clytia hemisphaericaexon
TCONS_00000458-exon-sc0000002-1510915933:1019672..1020053TCONS_00000458-exon-sc0000002-1510915933:1019672..1020053Clytia hemisphaericaexon
TCONS_00000458-exon-sc0000002-1575043694:1019672..1020053TCONS_00000458-exon-sc0000002-1575043694:1019672..1020053Clytia hemisphaericaexon
TCONS_00000458-exon-sc0000002-1491911889:1023234..1023749TCONS_00000458-exon-sc0000002-1491911889:1023234..1023749Clytia hemisphaericaexon
TCONS_00000458-exon-sc0000002-1510915933:1023234..1023749TCONS_00000458-exon-sc0000002-1510915933:1023234..1023749Clytia hemisphaericaexon
TCONS_00000458-exon-sc0000002-1575043694:1023234..1023749TCONS_00000458-exon-sc0000002-1575043694:1023234..1023749Clytia hemisphaericaexon
TCONS_00000458-exon-sc0000002-1491911889:1024593..1025647TCONS_00000458-exon-sc0000002-1491911889:1024593..1025647Clytia hemisphaericaexon
TCONS_00000458-exon-sc0000002-1510915933:1024593..1025647TCONS_00000458-exon-sc0000002-1510915933:1024593..1025647Clytia hemisphaericaexon
TCONS_00000458-exon-sc0000002-1575043694:1024593..1025647TCONS_00000458-exon-sc0000002-1575043694:1024593..1025647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1019432..1025647 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.59029 4.60571 8.09821 7.42194 179.821 142.565 67.0768 77.0744 41.4546 53.5099 20.8778 27.4042 19.3828 20.5227 37.6713 38.8474 3.21575 1.94382 2.56873 3.42108 0 0 9.57131 10.7626 0.107906 0 0.30122 0.482205 9.13151 10.9304
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020479Homeobox_metazoa
IPR000047HTH_motif
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
Blast
BLAST of TCONS_00000458 vs. Swiss-Prot (Human)
Match: DLX1 (Homeobox protein DLX-1 OS=Homo sapiens GN=DLX1 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 2.232e-26
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 1
Query:  937 NGKGGKLPRKPRTIFTSQQLRELNRAFERTHYLSLPERAELAHALGLTQTQIKIWFQNKRSKFKKIIKANGGQM 1158
            NGKG K+ RKPRTI++S QL+ LNR F++T YL+LPERAELA +LGLTQTQ+KIWFQNKRSKFKK++K  G  +
Sbjct:  122 NGKGKKI-RKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLMKQGGAAL 194          
The following BLAST results are available for this feature:
BLAST of TCONS_00000458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DLX12.232e-2668.92Homeobox protein DLX-1 OS=Homo sapiens GN=DLX1 PE=... [more]
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