TCONS_00000450 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000450
Unique Name	TCONS_00000450
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	706

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000002:958475..962472+

transcript sequence

>TCONS_00000450 ID=TCONS_00000450|Name=TCONS_00000450|organism=Clytia hemisphaerica|type=transcript|length=706bp
ATTGCAACATAGAATTGTTTTCAAATTACTAACACAACAATGGAGATGAA
CACAGAATTAGTCTGTGTGATGGCCAGTCTTGGCTATCATGATGACACGG
ACTACTTTCTGGGTGAAGATTGTCTTCCAAGTCTTAAAGATTTGATTCGT
TTCTTGAAACATGAAGATGAATCTTGTAACATCAGAAGACAAATGGGACA
TTCTCAACTGATTCAAAAGGACCTTCTTCCAATGTTCATGTTTCATGCTG
AAAATGCAGAACTCATTGATATTGTTGTCAGATTGCTTGTCAATTTGACC
TCACCTGCAGATATTTGCTTCAATAAGAATCAGAGTGAGCTAGCTGAAGA
ATCTGCCCCCACAAAAATGTCAAACACTTATTCTGCAAAGCAAATGGAAG
TTGTTGGCCATCTTCAAGGATACAAAGAGGCTTTTGTAAATGAAAAGGCA
ATGAGTGCAATTGCTGCTCAAATAGGAAAAGTTTTACAGATgGAAATGGA
AGATCGAGGAGAAGACGAATATTTGTTATTTGAACGATTGCTTCTCCTGC
TGAGAAACATTTTACACGTTCCTGCTTCACCAGAAGATGAAAAGcgAACT
GATGATGATGCCTCTCTGCATGATCAAATTTTATGGAGCATGCACTTGAA
TGGTATTGATGATTTGTTAGTTTACATTTGTAGCTCGCCAGAAGAGAGTC
GCTGGG

Run BLAST on NCBI

transcript from alignment at sc0000002:958475..962472+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000450 ID=TCONS_00000450|Name=TCONS_00000450|organism=Clytia hemisphaerica|type=transcript|length=3998bp|location=Sequence derived from alignment at sc0000002:958475..962472+ (Clytia hemisphaerica)
ATTGCAACATAGAATTGTTTTCAAATTACTGTAAGTGTTTGGATCAAgaa
aataccgggtgcgccacaaaaaagtttctctctttaaaactaattttctc
gaaatctaaaagttttaaacgaatcattcctatttcattagaaagaagaa
agataaacttaaattttgatgggtcatttattaaattcgattcatcagat
caaaagttaggctcaattgaatgaaaaagttattttcagaaaatgctcga
aactttgaaaatcgagctatcaaattttattttaaaattagcAATCAcca
tagcctttacatgattaagagcattttttcCGTAACTAAAcacttaaatt
ttgaaactgaagggtcgaaagggtttagaatcttcatcaaaatcatttta
atttacttttaccgaaattttcctcaaatcNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCTTTAGGG
AAAAACAGTTGACCTCTTCAGTCTCAGCCCCCCcccagaaattaaaattt
tgtttccCTCTcccctttttggaaaattttttttaaatctctaaCCCACC
CTGTAAAAAAGAGACACTATCCTAACCACTGATGATCCACGGTATTATTT
AAAAGCTTTGATTGCTTTGTGCTCTCTTCGCTTGAAATGTTTGACAGATT
AAAGATTGACCATCCATGAGAGAGTTCCTGGGCGTTTGTATTTGcgatgt
tagcttttttaggctcatgcaaataaatggatagaaatagaaataggaAG
GTGTTTTCTTACATTATTGCAGGTATCAAATAAATGCATTATATTAGGGG
CAAAACCACATTTATTTCATTCGAAAGTTGAAtatatttgaagatatttt
cgcGAGGGGGTCCACTGGTCAAAAATCTTTTATAGGCCAAAGACTGACNa
ttgaaacgaaaatactgatgcatcatgtaattatgcttctgtttaatttg
ataggtctatttttaacgtttttgggcACTTTCAGaaactaactttttta
tttaattgagcataacttttgatctactgaatcaaatttaataaatgacc
catcaaaatttaagtttatctttcttctttccgatgaaataagaatggtt
cttttaaaaatgttatatttcaagaaaattagttttaaagagagaaactt
ttttgtgacgCACCCGGTAGAAACACAAGGttctattttacaaatttttt
caaacgttCCAGGAATGAAAATTAAGGTATAATGATAATTTAATACTAAC
CATAGTGTCTNGCAGACCCCCCTCACAAAAATGTCTTcaaatacattcaa
cttttgaatgaaattcATGTGGTTGCTTCCTATAAAAGTTGTCACGGATC
CTATGTGATTGAATCCTATATGTGAtatatgatatttttttgaattactT
ACAAGCTANattttttttaaatctctaaCCCACCCTGTAAAAAAGAGACA
CTATCCTAACCACTGATGATCCACGGTATTATTTAAAAGCTTTGATTGCT
TTGTGCTCTCTTCGCTTGAAATGTTTGACAGATTAAAGATTGACCATCCA
TGAGAGAGTTCCTGGGCGTTCGTATTTGcgatgttagcttttttaggctc
gtgcaaataaatggatagaaatagaaataggaAGGTGTTTTCTTACATTA
TTGCAGGTATCAAATAAATGCATTTTATTAGGGGAAAAACCACATTTATT
TCATTCGAAAGTTGAATAtatttgaagacattttcgCGAGGGGGTCCACT
GGTCCAAAATCTTTTATAGGCCAAAGACTGATGTTacttttttacccatt
ttttgcctttaCAGTTTTGCCTGTAACGTCAGTCTTTaaccaataaaaaa
ttttgctagGCCTTAGCAGCAGACCCCCCTCACAAAAATGTCTTcaaata
cattcaacttttgaatgaaattcATGTGGTTGCTTCCTATAAAAGTTGTC
ACGGATCCTATATGTGATTGAATCCTATATGTGAtatatgatattttttt
gaattacttacaagctaaaaaaATTACTAATCAATATCAAGATCCAAAAC
CATACATTAATATGCATTGTGAAAAGTTAGTCCAAActatttattaaaat
ttgagTTCAAAAGATACTAAGTAAAAATGTTTACTTTCTTGCAGAACACA
ACAATGGAGATGAACACAGAATTAGTCTGTGTGATGGCCAGTCTTGGCTA
TCATGATGACACGGACTACTTTCTGGGTGAAGATTGTCTTCCAAGTCTTA
AAGATTTGATTCGTTTCTTGAAACATGAAGATGAATCTTGTAACATCAGA
AGACAAATGGGACATTCTCAACTGATTCAAAAGGTATGACAATCTTTCAA
TTATTATCCATAACAacggttttattttgaaagctctaATAACCTCTAAT
CACTAATGTTTTTCATATGCTAATAAATCTTCTGAATTGTTTAGGACCTT
CTTCCAATGTTCATGTTTCATGCTGAAAATGCAGAACTCATTGATATTGT
TGTCAGGTATgttaattttatcattttttactaCTACATTGGCGAAAGAA
TATGAATTAGATAAAAACAAGACAGCGCAATGCAAAATTTCATTCCTGCA
AAACAAGGTTGAAAGAGGCCATCAAAGATATCAATAAGATTTACAGCTCA
CAATAGTTGAGATGTCAATGATTCTACTTACCTTTCAGTCTCCTATAGGT
CCATTAACTTGGTGGTGAATCTAAGTACAGAATTTCAAGTCCTTTCTGTC
ATCCTTTCAGATTGCTTGTCAATTTGACCTCACCTGCAGATATTTGCTTC
AATAAGAATCAGAGTGAGCTAGCTGAAGAATCTGCCCCCACAAAAATGTC
AAACACTTATTCTGCAAAGCAAATGGAAGTTGTTGGCCATCTTCAAGGAT
ACAAAGAGGTAAATTTCTATTCTGATCTTTCCGGTTGTACCAAAATAGAA
ATCCTAAAAGTTTAATCATTATAACAAACTTTAACTTTTCATCTTTAATT
TATAGGCTTTTGTAAATGAAAAGGCAATGAGTGCAATTGCTGCTCAAATA
GGAAAAGTTTTACAGATggtatgttattattattatgtatTATTTATCAT
ATTGATACTTTGACCTCTAACTTAATATTCAGTTATTCAGGTCTCTGATC
TATCTAAGTAGTTTGCTTTGAGAAAATATCCTTGAGTACACATAATTTGA
CTTTGTCTAGGAAATGGAAGATCGAGGAGAAGACGAATATTTGTTATTTG
AACGATTGCTTCTCCTGCTGAGAAACATTTTACACGTTCCTGCTTCACCA
GAAGATGAAAAGGTgcattttaaaatcattttaccATACTACTTATGCTC
AATTAATTTTATGTTTTAGAAAAACAGTAGCAGTTCTTTACCcacatatt
ttcttaaaaactaAATCAAAATGATTAAACCTAAGGATAGCCAAGGAACT
AATTGTTTTAccctcttttttttgttttagcgAACTGATGATGATGCCTC
TCTGCATGATCAAATTTTATGGTAGGACATTCTTGCATTCTCTTTTAAGT
CCTACTACTCAGCTAgcctataaatatttttaaatatttctgtaacctgt
attttgaaattttctactttttaggATTTTCTTGTAATCTCTTAAGTAGT
TCTATTCATTCAGTCTATAAATTTGCTAGATACTAAGATGTATTTCTATT
CAAGTATTTCTGTAACCTGTTACTTGTAATTCTTTACTTCTTAACATTTA
GGAGCATGCACTTGAATGGTATTGATGATTTGTTAGTTTACATTTGTAGC
TCGCCAGAAGAGGTAAATTTATGTGAACATTTAGGTTTTATCATTCCCTC
TTTCTGTCAGAAAAGGattcatttttttacaattttgttttAACCATTGA
AAATTTTACCTTTCTTTCTGTCTATCTTTTCATATTAGAGTCGCTGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000286	XLOC_000286	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000002	supercontig	sc0000002:958475..962472 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70659	0.185613	1.36901	4.85694	1.87766	1.47434	2.5593	4.72642	0.407433	0	0	0	1.42523	0	0.954013	2.21488	0	0	1.25245	1.30078	0.673814	1.52844	0.000220626	0	4.88768	5.85003	0.0385797	0	0	0

Blast

[Close]

BLAST of TCONS_00000450 vs. Swiss-Prot (Human)
Match: TIM (Protein timeless homolog OS=Homo sapiens GN=TIMELESS PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 6.051e-51
Identity = 100/220 (45.45%), Postives = 150/220 (68.18%), Query Frame = 1

Query:   46 MNTELVCVMASLGYHDDTDYFLGEDCLPSLKDLIRFLKHEDESCNIRRQMGHSQLIQKDLLPMFMFHAENAELIDIVVRLLVNLTSPADICFNKNQSELAEESAPTKMSNTYSAKQMEVVGHLQGYKEAFVNEKAMSAIAAQIGKVLQMEMEDRGEDEYXXXXXXXXXXXXXXHVPASPEDEKRTDDDASLHDQILWSMHLNGIDDLLVYICSSPEESRW 705
            MN EL+   ++LGY +   Y    DCL S+KDLIR+L+HEDE+ ++R+Q+G +Q++Q DLLP+   H ++  L D V+RL+VNLT PA +CF     E            ++    ++V+ +LQ YKEAF +EKA   ++  + ++LQ+  E+R E++ LL ER+LLL+RNILHVPA  + EK+ DDDAS HDQ+LW++HL+G+DDLL+++ SS  E +W
Sbjct:    6 MNCELLATCSALGYLEGDTYHKEPDCLESVKDLIRYLRHEDETRDVRQQLGAAQILQSDLLPILTQHHQDKPLFDAVIRLMVNLTQPALLCFGNLPKE-----------PSFRHHFLQVLTYLQAYKEAFASEKAFGVLSETLYELLQLGWEERQEEDNLLIERILLLVRNILHVPADLDQEKKIDDDASAHDQLLWAIHLSGLDDLLLFLASSSAEEQW 214

The following BLAST results are available for this feature:

BLAST of TCONS_00000450 vs. Swiss-Prot (Human)

BLAST of TCONS_00000450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TIM	6.051e-51	45.45	Protein timeless homolog OS=Homo sapiens GN=TIMELE...	[more]

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TCONS_00000450 (transcript) - C. hemisphaerica