|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000423 ID=TCONS_00000423|Name=TCONS_00000423|organism=Clytia hemisphaerica|type=transcript|length=1489bp
GGTGGACTTTTCGAAATTTAGGTACGATTTGAAATGCAAATGCAATGATG
TGTAGAACCCAGTGCTAAAAAGATGAAATTCCATGAAAGATGTGGTAAAA
GTATATCATTTTCAAAGACTAGAGATTGTGCAGAAAGAAAAGAGGGATAT
GATAATGGAATTGTGTTCAGCTGCAAACCCTTAAAAAAAAGCCAGATTTT
TGAAGTAAAAATTGATGCAATAGAAGAAAAATGGGCTGGATCTATCagAC
TGGGTGTCACAACTGCTGACCCAAATGATCTACCCTATTTTCGGACAGTA
ACTGACATTCACTCCTCCTCTGAGCACAATTCAATGTTTTGGGTTTGTTG
TGGATCAAAATTATTCCATGGTAGTCAAGAATTTGCAATCAATAAAAGCT
TGTATGGTTTGTCAGGGGTTAGTGATATTATTGGTATTCAAGTACGTCAA
AATGGTCAGATGCATACATATAAAAATGGGGTTCACGTAGAGAATGTAGC
TGAAGGATTACCAGTAGATGTTGATTTGTATGTTATTGTGGATATCTATG
GTGCAGTTACTAAAGTATCATGTTTACAAGATAAAGTTTTATCATTGAAA
GAACACAGTCGGAGAGTTATACAAAATATTATCAAGGACGAAAATGACAT
AGACGATCTTAACATTCCGAAAGTATTGAAAGTTTTCCTTAAATTATGAT
AAGATTGctgtttcctttttttattttttgggtaAGTCTATGGTATAGCC
AATTTtatatccaattttcagaagTTTTATGTGTTTTTTAAAGTTGGACT
TAACAAAACAAGATACACTTGCAAAAAATATCTAtaggaaaaaaataact
cagactcttctttttcaatatttttacgctttagtttttctaataacccc
cttctcacagacccaataAGATTTTTTCATCCAGTGGGGGATAAAAATGA
AGGTCTGAAACTCGATGTGGATTGATattcaaatatttattttggctggg
gatttcaattcttttgttttcaagtcagaaaattcagtggggacgGGAAA
TATAGCAAAGTATTTTTCAGtgaagattggtttatttgattattttcagt
tgggacaaaaatttgagtagaattttccaccggggacgatattttggcca
atttttccagtgggaaggggacccagtgggtctgtgagaaggggtgttct
AATGTTCTATGTGTTGGTGTTCAAATGTAAAATATTCAGTAGTATAATTA
AATGATGTACAtatttttgaagtatttttcaaattcctttttatatatgA
CAATCAAGATTCCGTAATTAGATTTTATTAGGTAAGTTTTACCTTCATAT
GCTagcaaataaaacaaatttgatgaaaaacctgaaaatatgGTGTTTTT
GCTCCTTTCTCACTATTATTTGGATCTTTATTAAGTATTTGTTACATGGC
GCCCTGATCTGTATACGTCTTTATTGGgttgtatttttt Run BLAST on NCBI transcript from alignment at sc0000002:240087..246131+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000423 ID=TCONS_00000423|Name=TCONS_00000423|organism=Clytia hemisphaerica|type=transcript|length=6045bp|location=Sequence derived from alignment at sc0000002:240087..246131+ (Clytia hemisphaerica)
GGTGGACTTTTCGAAATTTAGGTACGATTTGAAATGCAAATGCAATGATG
TGTAGAACCCAGTGCTAAAAAGATGAAATTCCATGAAAGATGTGGTAAAA
GTATATCATTTTCAAAGACTAGAGATTGTGCAGAAAGAAAAGAGGGATAT
GATAATGGAATTGTGTTCAGCTGCAAACCCTTAAAAAAAAGCCAGATTTT
TGAAGTAAAAATTGATGCAATAGAAGAAAAATGGGCTGGATCTATCGTAA
GTATAATACTTGATAGTATAATGAAGTAACAAGCCTTTCTTCATGTATAA
GTCAGAGCATTAAGACCTCCCAACTCCATCCTTTTTTTTGTAAACCTTCT
TCAGCCTGCATATCTGACAACAATTTATTAATATCCCAAATTTTGCACGC
AATAACTCTGTGAATTTTCCTGCTTGACGTCCTATAAAGTTTTAGCTTCA
GTATTAGGGTTTTATTTCCTTGATATGGAACATATAACTTTCTGCTTGAA
TCGAATGGGTTGAGTATTTGATATGCAAAACTGAGTTAGTGATAGTAGGT
TGTTGTgttctcccaaacaactattTCCCGATGAATTAGGTGgtaatcac
aaatatctttgtttcgcgtcgcccgatcGACTCTCCAAAACGGAGTAGAA
CTGAGccggtgagtcggtaaatttgtctgactttttctgtcgatgacgtt
tccttcgttcaaaaattttattattgctaATTTTTTgtgagcgatttcta
gcgcattgacgacattttgactttgtttattaTTACATGCACCATTTTGG
GTCtgaggtcacagtgttcaaaggtcataatttgaaaccacccataacac
gcggttattaccataatttttagattgcaATTAGTCAACAGAAAAtaacc
aaacaaatgactgaacatgaagggtactatgatgtaatTTTTAACCTGAt
gtgtttttttattatcaTCATTATAGAGTTTTTACAGTTAGGCACACATT
GGGCCTCTAACCCGCTCTTCTTATAATCATGTTGTTTCcgtcgtaaattt
ctttaaataaagtttagtcctaggactacctctcactttccatatacgac
tcttaactttttctttcgatgttttttctttttgctttaagatgccattg
ttttattatctcacgttctttccttgaaaaatcaTCTGATACTCTGAAAT
CATCATTATCTAGTTTGTGGATGCAAGGATTCTTATCTTTTCCTCTGCAC
TGCTGAGAGTAACTTTTAATGGTTTACATCGTTCATTTGTATACATTTCA
TCTTTAAGAGCACCTATGCGTTCTACCTTGATTATCCTTGATTATCGTTA
CATCGAAACCCATTTGTTTTTCAGCATTCTTTTTATAAGTTCTTTGTCAC
CAACTCGTTGATGCTCTTCTTCGTCTTCGTTTTCACCTAAATGATGCACC
ATGATGTTACACTTGGTTGATTTTAGCCAACGCTCCTCTTCGTTCACTGA
TTTGATGaagttttttatgttttttgtagGTCTTCTTTGGTGACTTCTGC
ATATGATTGTTTTTGTTTCTGTGTTGTTGAGCTGTGTTTCGGATCGTTTG
TTGTTCCGTTCTTTGTTGACgtcttttttattcattagcTTCTCGACTTT
CCTTTTTTAGAGAGGTTATTCTCTCCTTTGAAACCTAACTTCAATCCATG
ATGTTCATCATTATCTGCTTCTTTCGTTGTAATGTTACTGTGAGCTTTTT
GTCTGCTTGTTTTAATCCTCTCAAGTAAGAGCGGCGTTATTGTAATACAA
TTTGCACATTCGAAGCGCTGGCTTTTATATTGCAGAAAAAGCTGAATCTA
ATAAGCCGGGAGCTCAGAGCAAGCATAATGGACAAGTCTATCACATCTCC
TACATTGTAAGGTATTGTTATCTGCTATGATGGTGTTTGTTAAACAGTTA
TTGGGTGTGCAATATCcataattttgttgaatttccttAGAATTTTCGTT
GATTTCTGCCATATTGGtacatgtcactagtccgacactttctagtccta
cagtaaaatagtccgaatctataaaataaatttacaatttagaagtTATT
TTTTCcaacgtcacttttgtccgaaaacgaaagattttagagtgtcgaat
gtcCAATCCAATgtcttgactcttgaaagcctaatcctaataagcttccc
aaaattcaagaaaagtCGAGTTTAGGGGCACTACCTCAAAGCAACGacct
aataaaatagatagaccagtatcctattgaaatgatccgcgtaagaatga
taaaaaaagtaatgattttttgcatcattaaaatgtcattccgcgtgcaa
aagcatttttttaagataagctattggttgatattgatcacatgacctaa
attttgtgaatatgttcttaatttcaagtcaaacttttaggcttaagaat
tagtaaacattgttaaaattataacatttgtatTTGGATAGTGTTTGTGT
TTTCTATCTAGCACCATGAACGCACGTTTATTTTCTTAGTTAgagtcttt
caaaaatgtttatgttcttaaagaaaatgcgctgtaaagcgcaacagtgt
tgtcgaaaaatattgaaaaatatcttgtgagaaagatgattaaaaatgcg
ACCTGACGTAAGCAAAAAAAATCGAAAATTATGTTTATGGTCAGTAGAAA
TTCgatataattgattttacaccatttagagatgcttgtaaaaagtctaa
tttctttgtaatatgaCTTACGCGGGAGGTGGAAAGACGGCAagatgaaa
gaatacaaaatgaatagaaaacaaaagatttctaagagccattgtatgaa
gttcttggtctatctattttattaagtcgttgctcaaagtcggaactttg
gatttttataagcacgtggttgattataaaagatgtgccttctcttcggc
gattcatatgtcgttttatatgttttttttactcgttgtcggacaaagtt
gttgtcggaatactggcGCATtagtcaaatccaacgtcgggcatttttac
tgtcggactagaaagtgtcggactactgacgacctcccgtTGCATTTTTA
GGATCAgttttttttcgctgattttcgcgaaaaaccgcaaaaactgatta
tgacgtcataatcgatgacaacataaaaactaaaaattgaatttttcaag
aATGGTGTATCCAATTATTTTCagactttcaccaaagatgtatcttgcCA
Aaatcgatcatttgaaaaaaaatttcgaaattacgatgacgtcagcagaa
gtaaaaatcgaaaaaccctattttttaTGCACTTGATCATTTCTAATTTG
CTACTATTATTTGCTAtgatcaaatttaaatttattttgaaaatctgttc
ttgtttttatctttttagagACTGGGTGTCACAACTGCTGACCCAAATGA
TCTACCCTATTTTCGGACAGTAACTGACATTCACTCCTCCTCTGAGCACA
ATTCAATGTTTTGGGTTTGTTGTGGATCAAAATTATTCCATGGTAGTCAA
GAATTTGCAATCAATAAAAGCTTGTATGGTTTGTCAGGGGTTAGTGATAT
TATTGGTGAGTAATAAAAACATTATTATGTTCATTGTAACTCTTATATTT
ATGTATCTTTGTTTAATCGTCAAACAGGAAGAAGTTGAGaagttatttta
ttttattgactACAAATAATTATAAGCATATCCTTTAGAATTATGCAAAT
TATGTATTAATCTCTTATTAATCCACAAAACTTACTTACTGCACGATTTA
ACGTCCGTTGTTCCCAGCAGCTGGGGTTGGACGCCTTCCTCTAATGACTG
TACGCCAGGCTGCCCGATCGTTAGTCATGTTGACAGTCGCATTAATAAAT
TTGAGGTCGTCTTTGATATTGTCTATCCATCTTTTTTTTGGTCTGCCTAA
ATATTTACCTTCCATACCATGGGAAAGGATTCTGCTGAAAGTCTTCGTAC
ATACGCTGAACATGGCCAAACCAGTGTAGCCTACCTTGACGTAGCAAATC
GTCAATTGGAGCGATGCCAAGCCTATCTCTAAGGACATTCATAGAGACCC
TTTCTGACAAACGTGTTGAACAAATCCAAATAACGTTGGTCTTACGGGTA
TTAACACGGAGGCCTTCTGCTTCAATTCCTTGCTTCCACTGAGCAAGCTC
ATCCTTTGATTCAACAATAATAACAAGATCATCAGCGTAGTAGAATTGCT
TCCTACACCCTTATAACAAACAATACAAGGCCATTTACTTAATTTTTGTC
TTTCACTCAGGCCATTTTTGCAGTGCATAACCTTGGTCTTAGGGGTGTTA
ACACGAAGGCCTTTTGCTTTAATTCCTTTCTTCCACTGAGCAAGCTTTAA
CAGATAATAATAACAAGATCATGGACAGCCAGTTCGAAATTCTTGGGACA
GAGCCTCCATAACAATTATGAATAACAGACGACAAAACTTGTAGGAAATG
ACTTTTTGCttgttctttttaattttttttatttcaatctgaaGGTATTC
AAGTACGTCAAAATGGTCAGATGCATACATATAAAAATGGGGTTCACGTA
GAGAATGTAGCTGAAGGATTACCAGTAGATGTTGATTTGTATGTTATTGT
GGATATCTATGGTGCAGTTACTAAAGTATCATGTTTACAAGATAAAGGTA
CAATTTCCTAAAAGCTTATTCCTTTCCATGATAATTTTGATTAAAAGTTA
GATATTCTTATCTTGAAATTAAATGCTGTGTTGAAATACTTTCAACTTTC
CTATTTCCGTTTCTATTTGGTTGAATGAGGCTCCGAGGcccattttttgg
aaaattatagATGCATCGTCAGGCATTGTATGTATAATGACCCCGTCAGC
atcttggactgactacccgaCTCCCCTTGATCGGGGCGAAGGTTCGTTCA
TtttccaagtgaaccgctgcgagttgGAATCAAACTAAATAGTACATAGT
TCCAGCGTTAAGATTGATGACCACTATAACACAACGTTTTTCTCGTCAGT
TTCCTAGTTATTCCTCCTCTTTTGAAACTTTAGACCATTACTTATACCTC
TGcctgtgaaaatgataactGGTATCTTTTATTTTCTTACAGTTTTATCA
TTGAAAGAACACAGTCGGAGAGTTATACAAAATATTATCAAGGACGAAAA
TGACATAGACGATCTTAACATTCCGAAAGTATTGAAAGTTTTCCTTAAAT
TATGATAAGATTGctgtttcctttttttattttttgggtaAGTCTATGGT
ATAGCCAATTTtatatccaattttcagaagTTTTATGTGTTTTTTAAAGT
TGGACTTAACAAAACAAGATACACTTGCAAAAAATATCTAtaggaaaaaa
ataactcagactcttctttttcaatatttttacgctttagtttttctaat
aacccccttctcacagacccaataAGATTTTTTCATCCAGTGGGGGATAA
AAATGAAGGTCTGAAACTCGATGTGGATTGATattcaaatatttattttg
gctggggatttcaattcttttgttttcaagtcagaaaattcagtggggac
gGGAAATATAGCAAAGTATTTTTCAGtgaagattggtttatttgattatt
ttcagttgggacaaaaatttgagtagaattttccaccggggacgatattt
tggccaatttttccagtgggaaggggacccagtgggtctgtgagaagggg
tgttctAATGTTCTATGTGTTGGTGTTCAAATGTAAAATATTCAGTAGTA
TAATTAAATGATGTACAtatttttgaagtatttttcaaattcctttttat
atatgACAATCAAGATTCCGTAATTAGATTTTATTAGGTAAGTTTTACCT
TCATATGCTagcaaataaaacaaatttgatgaaaaacctgaaaatatgGT
GTTTTTGCTCCTTTCTCACTATTATTTGGATCTTTATTAAGTATTTGTTA
CATGGCGCCCTGATCTGTATACGTCTTTATTGGgttgtatttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000423-exon-sc0000002-1491911889:240087..240332 | TCONS_00000423-exon-sc0000002-1491911889:240087..240332 | Clytia hemisphaerica | exon |
| TCONS_00000423-exon-sc0000002-1510915933:240087..240332 | TCONS_00000423-exon-sc0000002-1510915933:240087..240332 | Clytia hemisphaerica | exon |
| TCONS_00000423-exon-sc0000002-1575043694:240087..240332 | TCONS_00000423-exon-sc0000002-1575043694:240087..240332 | Clytia hemisphaerica | exon |
| TCONS_00000423-exon-sc0000002-1491911889:243505..243691 | TCONS_00000423-exon-sc0000002-1491911889:243505..243691 | Clytia hemisphaerica | exon |
| TCONS_00000423-exon-sc0000002-1510915933:243505..243691 | TCONS_00000423-exon-sc0000002-1510915933:243505..243691 | Clytia hemisphaerica | exon |
| TCONS_00000423-exon-sc0000002-1575043694:243505..243691 | TCONS_00000423-exon-sc0000002-1575043694:243505..243691 | Clytia hemisphaerica | exon |
| TCONS_00000423-exon-sc0000002-1491911889:244631..244783 | TCONS_00000423-exon-sc0000002-1491911889:244631..244783 | Clytia hemisphaerica | exon |
| TCONS_00000423-exon-sc0000002-1510915933:244631..244783 | TCONS_00000423-exon-sc0000002-1510915933:244631..244783 | Clytia hemisphaerica | exon |
| TCONS_00000423-exon-sc0000002-1575043694:244631..244783 | TCONS_00000423-exon-sc0000002-1575043694:244631..244783 | Clytia hemisphaerica | exon |
| TCONS_00000423-exon-sc0000002-1491911889:245229..246131 | TCONS_00000423-exon-sc0000002-1491911889:245229..246131 | Clytia hemisphaerica | exon |
| TCONS_00000423-exon-sc0000002-1510915933:245229..246131 | TCONS_00000423-exon-sc0000002-1510915933:245229..246131 | Clytia hemisphaerica | exon |
| TCONS_00000423-exon-sc0000002-1575043694:245229..246131 | TCONS_00000423-exon-sc0000002-1575043694:245229..246131 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:240087..246131 + |
Blast
BLAST of TCONS_00000423 vs. Swiss-Prot (Human)
Match: NEUL4 (Neuralized-like protein 4 OS=Homo sapiens GN=NEURL4 PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.190e-18 Identity = 49/148 (33.11%), Postives = 85/148 (57.43%), Query Frame = 1
Query: 61 SAKKMKFHERCGKSISFSKTRDCAERK---EGYDNGIVFSCKPLKKSQIFEVKIDAIEEKWAGSIRLGVTTADPNDLPYFRTVTDIHSSSEHNSMFWVCCGSKLFHGSQ----EFAINKSLYGLSGVSDIIGIQVRQNGQMHTYKNGV 483
S + FHE+CG I S AER+ + ++NG+V + +PL+ +++FE++ID + +KW+GSI +GVTT +PN L Y T+T++ S + S + K G++ EF++++ G D IG+ + N +H + NG+
Sbjct: 314 SNDALLFHEKCGTLIKLSNNNKTAERRRPLDEFNNGVVMTNRPLRDNEMFEIRIDKLVDKWSGSIEIGVTTHNPNSLEYPATMTNLQSGTIMMSGCGILTNGK---GTRREYCEFSLDELQEG-----DHIGLTRKSNSALHFFINGI 453
The following BLAST results are available for this feature:
|
