XLOC_000274 (gene) - C. hemisphaerica

Overview
NameXLOC_000274
Unique NameXLOC_000274
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000002:238454..246131+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000274 ID=XLOC_000274|Name=XLOC_000274|organism=Clytia hemisphaerica|type=gene|length=7678bp|location=Sequence derived from alignment at sc0000002:238454..246131+ (Clytia hemisphaerica)
caaaaacaacaaagatggtagatgaaaattcgaaatttttgttaagagtg
tgTGGTGGACTTTTCGAAATTTAGGTACGATTTGAAATGCAAATGCAATG
ATGTGTAGAACCCAGTGCTAAAAAGATGAAATTCCATGAAAGATGTGGTA
AAAGTATATCATTTTCAAAGACTAGAGATTGTGCAGAAAGAAAAGAGGGA
TATGATAATGGAATTGTGTTCAGCTGCAAACCCTTAAAAAAAAGCCAGAT
TTTTGAAGTAAAAATTGATGCAATAGAAGAAAAATGGGCTGGATCTATCG
TAAGTATAATACTTGATAGCATAATGAAGTAACAAGCCTTTCTTCATGTG
TCAGAGCATTAAGACCTCCCAACTCCATCCTTTTTCTGTAAACCTTCCTC
AGCCTGCATATCTGACAACAATTTATTAATATCCCGAATTTTGCACGCAA
TAACTCTGTGAATTTTCCTGCTTGACGTCCTATAAAGTTTTAGCTTCAGT
ATTAGGGTTTTATTTCCGTGATATGGAACATATAACTTTCTGCTTGAATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaa
aacacgtcaaaaagacaatttaaatgacgtcattattgaaaaaaggcgat
aattccgattaacttactacaatcaaagcaaaattttgattggagatgta
aattaacgattctaaaatatttcatgaaaaaaagcttgaaaattcatgat
gacgtcagcattttctgacgtattttaatttttcccgacaacaaatgacg
ttattcaaattttctgaaaatttttgaacaaatatttcagaatcattaat
ttactactccagtcaaaatttggtgttgattgtattaataaaattgaagt
tatcgctgtttttcaataatgacgtcatttgaatcttacttatgacgtgt
tttttcgatgtattttataacgtcaaaatcaattNTAGTCGGAAAATCGA
TGGTATAGCCCCACGAACAATACTAACGTCTTTACAATCATTTCTCTCTT
TTAACGCTTCTTTCAAAGCTATCAAGGAAGTAGTTTTTGGTTCTACCAAA
CTTTTCCATTTCGTCGTtcaaaatatgacccacgcaaaaaataatgaccc
acgcaaaaaatatgacccacacgcaaaaatattgaccacgcaaaaatatt
gacccacgcacccacgcaaccccACGCAATTTAGAACCAGCGGTCCCCCC
GGCCGGCCGCGGGTAAATGTTTGATGAGCCAAACCTATAAAATCTACAAT
ATTGGCTATTTCGGCGCCCtatcaaacaaaaacaacaaagatggtagata
tgaaaattcgaaatttttgttttaagagTGTGTGGTGGACTTTTCGAAAT
TTAGGTACGATTTGAAATGCAAATGCAATGATGTGTAGAACCCAGTGCTA
AAAAGATGAAATTCCATGAAAGATGTGGTAAAAGTATATCATTTTCAAAG
ACTAGAGATTGTGCAGAAAGAAAAGAGGGATATGATAATGGAATTGTGTT
CAGCTGCAAACCCTTAAAAAAAAGCCAGATTTTTGAAGTAAAAATTGATG
CAATAGAAGAAAAATGGGCTGGATCTATCGTAAGTATAATACTTGATAGT
ATAATGAAGTAACAAGCCTTTCTTCATGTATAAGTCAGAGCATTAAGACC
TCCCAACTCCATCCTTTTTTTTGTAAACCTTCTTCAGCCTGCATATCTGA
CAACAATTTATTAATATCCCAAATTTTGCACGCAATAACTCTGTGAATTT
TCCTGCTTGACGTCCTATAAAGTTTTAGCTTCAGTATTAGGGTTTTATTT
CCTTGATATGGAACATATAACTTTCTGCTTGAATCGAATGGGTTGAGTAT
TTGATATGCAAAACTGAGTTAGTGATAGTAGGTTGTTGTgttctcccaaa
caactattTCCCGATGAATTAGGTGgtaatcacaaatatctttgtttcgc
gtcgcccgatcGACTCTCCAAAACGGAGTAGAACTGAGccggtgagtcgg
taaatttgtctgactttttctgtcgatgacgtttccttcgttcaaaaatt
ttattattgctaATTTTTTgtgagcgatttctagcgcattgacgacattt
tgactttgtttattaTTACATGCACCATTTTGGGTCtgaggtcacagtgt
tcaaaggtcataatttgaaaccacccataacacgcggttattaccataat
ttttagattgcaATTAGTCAACAGAAAAtaaccaaacaaatgactgaaca
tgaagggtactatgatgtaatTTTTAACCTGAtgtgtttttttattatca
TCATTATAGAGTTTTTACAGTTAGGCACACATTGGGCCTCTAACCCGCTC
TTCTTATAATCATGTTGTTTCcgtcgtaaatttctttaaataaagtttag
tcctaggactacctctcactttccatatacgactcttaactttttctttc
gatgttttttctttttgctttaagatgccattgttttattatctcacgtt
ctttccttgaaaaatcaTCTGATACTCTGAAATCATCATTATCTAGTTTG
TGGATGCAAGGATTCTTATCTTTTCCTCTGCACTGCTGAGAGTAACTTTT
AATGGTTTACATCGTTCATTTGTATACATTTCATCTTTAAGAGCACCTAT
GCGTTCTACCTTGATTATCCTTGATTATCGTTACATCGAAACCCATTTGT
TTTTCAGCATTCTTTTTATAAGTTCTTTGTCACCAACTCGTTGATGCTCT
TCTTCGTCTTCGTTTTCACCTAAATGATGCACCATGATGTTACACTTGGT
TGATTTTAGCCAACGCTCCTCTTCGTTCACTGATTTGATGaagtttttta
tgttttttgtagGTCTTCTTTGGTGACTTCTGCATATGATTGTTTTTGTT
TCTGTGTTGTTGAGCTGTGTTTCGGATCGTTTGTTGTTCCGTTCTTTGTT
GACgtcttttttattcattagcTTCTCGACTTTCCTTTTTTAGAGAGGTT
ATTCTCTCCTTTGAAACCTAACTTCAATCCATGATGTTCATCATTATCTG
CTTCTTTCGTTGTAATGTTACTGTGAGCTTTTTGTCTGCTTGTTTTAATC
CTCTCAAGTAAGAGCGGCGTTATTGTAATACAATTTGCACATTCGAAGCG
CTGGCTTTTATATTGCAGAAAAAGCTGAATCTAATAAGCCGGGAGCTCAG
AGCAAGCATAATGGACAAGTCTATCACATCTCCTACATTGTAAGGTATTG
TTATCTGCTATGATGGTGTTTGTTAAACAGTTATTGGGTGTGCAATATCc
ataattttgttgaatttccttAGAATTTTCGTTGATTTCTGCCATATTGG
tacatgtcactagtccgacactttctagtcctacagtaaaatagtccgaa
tctataaaataaatttacaatttagaagtTATTTTTTCcaacgtcacttt
tgtccgaaaacgaaagattttagagtgtcgaatgtcCAATCCAATgtctt
gactcttgaaagcctaatcctaataagcttcccaaaattcaagaaaagtC
GAGTTTAGGGGCACTACCTCAAAGCAACGacctaataaaatagatagacc
agtatcctattgaaatgatccgcgtaagaatgataaaaaaagtaatgatt
ttttgcatcattaaaatgtcattccgcgtgcaaaagcatttttttaagat
aagctattggttgatattgatcacatgacctaaattttgtgaatatgttc
ttaatttcaagtcaaacttttaggcttaagaattagtaaacattgttaaa
attataacatttgtatTTGGATAGTGTTTGTGTTTTCTATCTAGCACCAT
GAACGCACGTTTATTTTCTTAGTTAgagtctttcaaaaatgtttatgttc
ttaaagaaaatgcgctgtaaagcgcaacagtgttgtcgaaaaatattgaa
aaatatcttgtgagaaagatgattaaaaatgcgACCTGACGTAAGCAAAA
AAAATCGAAAATTATGTTTATGGTCAGTAGAAATTCgatataattgattt
tacaccatttagagatgcttgtaaaaagtctaatttctttgtaatatgaC
TTACGCGGGAGGTGGAAAGACGGCAagatgaaagaatacaaaatgaatag
aaaacaaaagatttctaagagccattgtatgaagttcttggtctatctat
tttattaagtcgttgctcaaagtcggaactttggatttttataagcacgt
ggttgattataaaagatgtgccttctcttcggcgattcatatgtcgtttt
atatgttttttttactcgttgtcggacaaagttgttgtcggaatactggc
GCATtagtcaaatccaacgtcgggcatttttactgtcggactagaaagtg
tcggactactgacgacctcccgtTGCATTTTTAGGATCAgttttttttcg
ctgattttcgcgaaaaaccgcaaaaactgattatgacgtcataatcgatg
acaacataaaaactaaaaattgaatttttcaagaATGGTGTATCCAATTA
TTTTCagactttcaccaaagatgtatcttgcCAAaatcgatcatttgaaa
aaaaatttcgaaattacgatgacgtcagcagaagtaaaaatcgaaaaacc
ctattttttaTGCACTTGATCATTTCTAATTTGCTACTATTATTTGCTAt
gatcaaatttaaatttattttgaaaatctgttcttgtttttatcttttta
gagACTGGGTGTCACAACTGCTGACCCAAATGATCTACCCTATTTTCGGA
CAGTAACTGACATTCACTCCTCCTCTGAGCACAATTCAATGTTTTGGGTT
TGTTGTGGATCAAAATTATTCCATGGTAGTCAAGAATTTGCAATCAATAA
AAGCTTGTATGGTTTGTCAGGGGTTAGTGATATTATTGGTGAGTAATAAA
AACATTATTATGTTCATTGTAACTCTTATATTTATGTATCTTTGTTTAAT
CGTCAAACAGGAAGAAGTTGAGaagttattttattttattgactACAAAT
AATTATAAGCATATCCTTTAGAATTATGCAAATTATGTATTAATCTCTTA
TTAATCCACAAAACTTACTTACTGCACGATTTAACGTCCGTTGTTCCCAG
CAGCTGGGGTTGGACGCCTTCCTCTAATGACTGTACGCCAGGCTGCCCGA
TCGTTAGTCATGTTGACAGTCGCATTAATAAATTTGAGGTCGTCTTTGAT
ATTGTCTATCCATCTTTTTTTTGGTCTGCCTAAATATTTACCTTCCATAC
CATGGGAAAGGATTCTGCTGAAAGTCTTCGTACATACGCTGAACATGGCC
AAACCAGTGTAGCCTACCTTGACGTAGCAAATCGTCAATTGGAGCGATGC
CAAGCCTATCTCTAAGGACATTCATAGAGACCCTTTCTGACAAACGTGTT
GAACAAATCCAAATAACGTTGGTCTTACGGGTATTAACACGGAGGCCTTC
TGCTTCAATTCCTTGCTTCCACTGAGCAAGCTCATCCTTTGATTCAACAA
TAATAACAAGATCATCAGCGTAGTAGAATTGCTTCCTACACCCTTATAAC
AAACAATACAAGGCCATTTACTTAATTTTTGTCTTTCACTCAGGCCATTT
TTGCAGTGCATAACCTTGGTCTTAGGGGTGTTAACACGAAGGCCTTTTGC
TTTAATTCCTTTCTTCCACTGAGCAAGCTTTAACAGATAATAATAACAAG
ATCATGGACAGCCAGTTCGAAATTCTTGGGACAGAGCCTCCATAACAATT
ATGAATAACAGACGACAAAACTTGTAGGAAATGACTTTTTGCttgttctt
tttaattttttttatttcaatctgaaGGTATTCAAGTACGTCAAAATGGT
CAGATGCATACATATAAAAATGGGGTTCACGTAGAGAATGTAGCTGAAGG
ATTACCAGTAGATGTTGATTTGTATGTTATTGTGGATATCTATGGTGCAG
TTACTAAAGTATCATGTTTACAAGATAAAGGTACAATTTCCTAAAAGCTT
ATTCCTTTCCATGATAATTTTGATTAAAAGTTAGATATTCTTATCTTGAA
ATTAAATGCTGTGTTGAAATACTTTCAACTTTCCTATTTCCGTTTCTATT
TGGTTGAATGAGGCTCCGAGGcccattttttggaaaattatagATGCATC
GTCAGGCATTGTATGTATAATGACCCCGTCAGCatcttggactgactacc
cgaCTCCCCTTGATCGGGGCGAAGGTTCGTTCATtttccaagtgaaccgc
tgcgagttgGAATCAAACTAAATAGTACATAGTTCCAGCGTTAAGATTGA
TGACCACTATAACACAACGTTTTTCTCGTCAGTTTCCTAGTTATTCCTCC
TCTTTTGAAACTTTAGACCATTACTTATACCTCTGcctgtgaaaatgata
actGGTATCTTTTATTTTCTTACAGTTTTATCATTGAAAGAACACAGTCG
GAGAGTTATACAAAATATTATCAAGGACGAAAATGACATAGACGATCTTA
ACATTCCGAAAGTATTGAAAGTTTTCCTTAAATTATGATAAGATTGctgt
ttcctttttttattttttgggtaAGTCTATGGTATAGCCAATTTtatatc
caattttcagaagTTTTATGTGTTTTTTAAAGTTGGACTTAACAAAACAA
GATACACTTGCAAAAAATATCTAtaggaaaaaaataactcagactcttct
ttttcaatatttttacgctttagtttttctaataacccccttctcacaga
cccaataAGATTTTTTCATCCAGTGGGGGATAAAAATGAAGGTCTGAAAC
TCGATGTGGATTGATattcaaatatttattttggctggggatttcaattc
ttttgttttcaagtcagaaaattcagtggggacgGGAAATATAGCAAAGT
ATTTTTCAGtgaagattggtttatttgattattttcagttgggacaaaaa
tttgagtagaattttccaccggggacgatattttggccaatttttccagt
gggaaggggacccagtgggtctgtgagaaggggtgttctAATGTTCTATG
TGTTGGTGTTCAAATGTAAAATATTCAGTAGTATAATTAAATGATGTACA
tatttttgaagtatttttcaaattcctttttatatatgACAATCAAGATT
CCGTAATTAGATTTTATTAGGTAAGTTTTACCTTCATATGCTagcaaata
aaacaaatttgatgaaaaacctgaaaatatgGTGTTTTTGCTCCTTTCTC
ACTATTATTTGGATCTTTATTAAGTATTTGTTACATGGCGCCCTGATCTG
TATACGTCTTTATTGGgttgtatttttt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000422TCONS_00000422Clytia hemisphaericatranscript
TCONS_00000423TCONS_00000423Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000422-proteinTCONS_00000422-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:238454..246131 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.65	4.39	2.54	2.91	5.25	3.27	5.57	5.97	4.96	4.38	6.68	4.23	4.92	5.72	3.74	4.4	4.26	5.18	3.96	3.67	7.52	6.86	5.59	6.23	8.5	8.34	4.5	3.81	6.23	6.02