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TCONS_00000422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000422
Unique NameTCONS_00000422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000422 ID=TCONS_00000422|Name=TCONS_00000422|organism=Clytia hemisphaerica|type=transcript|length=1542bp
caaaaacaacaaagatggtagatgaaaattcgaaatttttgttaagagtg
tgTGGTGGACTTTTCGAAATTTAGGTACGATTTGAAATGCAAATGCAATG
ATGTGTAGAACCCAGTGCTAAAAAGATGAAATTCCATGAAAGATGTGGTA
AAAGTATATCATTTTCAAAGACTAGAGATTGTGCAGAAAGAAAAGAGGGA
TATGATAATGGAATTGTGTTCAGCTGCAAACCCTTAAAAAAAAGCCAGAT
TTTTGAAGTAAAAATTGATGCAATAGAAGAAAAATGGGCTGGATCTATCa
gACTGGGTGTCACAACTGCTGACCCAAATGATCTACCCTATTTTCGGACA
GTAACTGACATTCACTCCTCCTCTGAGCACAATTCAATGTTTTGGGTTTG
TTGTGGATCAAAATTATTCCATGGTAGTCAAGAATTTGCAATCAATAAAA
GCTTGTATGGTTTGTCAGGGGTTAGTGATATTATTGGTATTCAAGTACGT
CAAAATGGTCAGATGCATACATATAAAAATGGGGTTCACGTAGAGAATGT
AGCTGAAGGATTACCAGTAGATGTTGATTTGTATGTTATTGTGGATATCT
ATGGTGCAGTTACTAAAGTATCATGTTTACAAGATAAAGTTTTATCATTG
AAAGAACACAGTCGGAGAGTTATACAAAATATTATCAAGGACGAAAATGA
CATAGACGATCTTAACATTCCGAAAGTATTGAAAGTTTTCCTTAAATTAT
GATAAGATTGctgtttcctttttttattttttgggtaAGTCTATGGTATA
GCCAATTTtatatccaattttcagaagTTTTATGTGTTTTTTAAAGTTGG
ACTTAACAAAACAAGATACACTTGCAAAAAATATCTAtaggaaaaaaata
actcagactcttctttttcaatatttttacgctttagtttttctaataac
ccccttctcacagacccaataAGATTTTTTCATCCAGTGGGGGATAAAAA
TGAAGGTCTGAAACTCGATGTGGATTGATattcaaatatttattttggct
ggggatttcaattcttttgttttcaagtcagaaaattcagtggggacgGG
AAATATAGCAAAGTATTTTTCAGtgaagattggtttatttgattattttc
agttgggacaaaaatttgagtagaattttccaccggggacgatattttgg
ccaatttttccagtgggaaggggacccagtgggtctgtgagaaggggtgt
tctAATGTTCTATGTGTTGGTGTTCAAATGTAAAATATTCAGTAGTATAA
TTAAATGATGTACAtatttttgaagtatttttcaaattcctttttatata
tgACAATCAAGATTCCGTAATTAGATTTTATTAGGTAAGTTTTACCTTCA
TATGCTagcaaataaaacaaatttgatgaaaaacctgaaaatatgGTGTT
TTTGCTCCTTTCTCACTATTATTTGGATCTTTATTAAGTATTTGTTACAT
GGCGCCCTGATCTGTATACGTCTTTATTGGgttgtatttttt
Run BLAST on NCBI

protein sequence of TCONS_00000422-protein

>TCONS_00000422-protein ID=TCONS_00000422-protein|Name=TCONS_00000422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MKFHERCGKSISFSKTRDCAERKEGYDNGIVFSCKPLKKSQIFEVKIDAI
EEKWAGSIRLGVTTADPNDLPYFRTVTDIHSSSEHNSMFWVCCGSKLFHG
SQEFAINKSLYGLSGVSDIIGIQVRQNGQMHTYKNGVHVENVAEGLPVDV
DLYVIVDIYGAVTKVSCLQDKVLSLKEHSRRVIQNIIKDENDIDDLNIPK
VLKVFLKL
Run BLAST on NCBI

transcript from alignment at sc0000002:238454..246131+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000422 ID=TCONS_00000422|Name=TCONS_00000422|organism=Clytia hemisphaerica|type=transcript|length=7678bp|location=Sequence derived from alignment at sc0000002:238454..246131+ (Clytia hemisphaerica)
caaaaacaacaaagatggtagatgaaaattcgaaatttttgttaagagtg tgTGGTGGACTTTTCGAAATTTAGGTACGATTTGAAATGCAAATGCAATG ATGTGTAGAACCCAGTGCTAAAAAGATGAAATTCCATGAAAGATGTGGTA AAAGTATATCATTTTCAAAGACTAGAGATTGTGCAGAAAGAAAAGAGGGA TATGATAATGGAATTGTGTTCAGCTGCAAACCCTTAAAAAAAAGCCAGAT TTTTGAAGTAAAAATTGATGCAATAGAAGAAAAATGGGCTGGATCTATCG TAAGTATAATACTTGATAGCATAATGAAGTAACAAGCCTTTCTTCATGTG TCAGAGCATTAAGACCTCCCAACTCCATCCTTTTTCTGTAAACCTTCCTC AGCCTGCATATCTGACAACAATTTATTAATATCCCGAATTTTGCACGCAA TAACTCTGTGAATTTTCCTGCTTGACGTCCTATAAAGTTTTAGCTTCAGT ATTAGGGTTTTATTTCCGTGATATGGAACATATAACTTTCTGCTTGAATN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaa aacacgtcaaaaagacaatttaaatgacgtcattattgaaaaaaggcgat aattccgattaacttactacaatcaaagcaaaattttgattggagatgta aattaacgattctaaaatatttcatgaaaaaaagcttgaaaattcatgat gacgtcagcattttctgacgtattttaatttttcccgacaacaaatgacg ttattcaaattttctgaaaatttttgaacaaatatttcagaatcattaat ttactactccagtcaaaatttggtgttgattgtattaataaaattgaagt tatcgctgtttttcaataatgacgtcatttgaatcttacttatgacgtgt tttttcgatgtattttataacgtcaaaatcaattNTAGTCGGAAAATCGA TGGTATAGCCCCACGAACAATACTAACGTCTTTACAATCATTTCTCTCTT TTAACGCTTCTTTCAAAGCTATCAAGGAAGTAGTTTTTGGTTCTACCAAA CTTTTCCATTTCGTCGTtcaaaatatgacccacgcaaaaaataatgaccc acgcaaaaaatatgacccacacgcaaaaatattgaccacgcaaaaatatt gacccacgcacccacgcaaccccACGCAATTTAGAACCAGCGGTCCCCCC GGCCGGCCGCGGGTAAATGTTTGATGAGCCAAACCTATAAAATCTACAAT ATTGGCTATTTCGGCGCCCtatcaaacaaaaacaacaaagatggtagata tgaaaattcgaaatttttgttttaagagTGTGTGGTGGACTTTTCGAAAT TTAGGTACGATTTGAAATGCAAATGCAATGATGTGTAGAACCCAGTGCTA AAAAGATGAAATTCCATGAAAGATGTGGTAAAAGTATATCATTTTCAAAG ACTAGAGATTGTGCAGAAAGAAAAGAGGGATATGATAATGGAATTGTGTT CAGCTGCAAACCCTTAAAAAAAAGCCAGATTTTTGAAGTAAAAATTGATG CAATAGAAGAAAAATGGGCTGGATCTATCGTAAGTATAATACTTGATAGT ATAATGAAGTAACAAGCCTTTCTTCATGTATAAGTCAGAGCATTAAGACC TCCCAACTCCATCCTTTTTTTTGTAAACCTTCTTCAGCCTGCATATCTGA CAACAATTTATTAATATCCCAAATTTTGCACGCAATAACTCTGTGAATTT TCCTGCTTGACGTCCTATAAAGTTTTAGCTTCAGTATTAGGGTTTTATTT CCTTGATATGGAACATATAACTTTCTGCTTGAATCGAATGGGTTGAGTAT TTGATATGCAAAACTGAGTTAGTGATAGTAGGTTGTTGTgttctcccaaa caactattTCCCGATGAATTAGGTGgtaatcacaaatatctttgtttcgc gtcgcccgatcGACTCTCCAAAACGGAGTAGAACTGAGccggtgagtcgg taaatttgtctgactttttctgtcgatgacgtttccttcgttcaaaaatt ttattattgctaATTTTTTgtgagcgatttctagcgcattgacgacattt tgactttgtttattaTTACATGCACCATTTTGGGTCtgaggtcacagtgt tcaaaggtcataatttgaaaccacccataacacgcggttattaccataat ttttagattgcaATTAGTCAACAGAAAAtaaccaaacaaatgactgaaca tgaagggtactatgatgtaatTTTTAACCTGAtgtgtttttttattatca TCATTATAGAGTTTTTACAGTTAGGCACACATTGGGCCTCTAACCCGCTC TTCTTATAATCATGTTGTTTCcgtcgtaaatttctttaaataaagtttag tcctaggactacctctcactttccatatacgactcttaactttttctttc gatgttttttctttttgctttaagatgccattgttttattatctcacgtt ctttccttgaaaaatcaTCTGATACTCTGAAATCATCATTATCTAGTTTG TGGATGCAAGGATTCTTATCTTTTCCTCTGCACTGCTGAGAGTAACTTTT AATGGTTTACATCGTTCATTTGTATACATTTCATCTTTAAGAGCACCTAT GCGTTCTACCTTGATTATCCTTGATTATCGTTACATCGAAACCCATTTGT TTTTCAGCATTCTTTTTATAAGTTCTTTGTCACCAACTCGTTGATGCTCT TCTTCGTCTTCGTTTTCACCTAAATGATGCACCATGATGTTACACTTGGT TGATTTTAGCCAACGCTCCTCTTCGTTCACTGATTTGATGaagtttttta tgttttttgtagGTCTTCTTTGGTGACTTCTGCATATGATTGTTTTTGTT TCTGTGTTGTTGAGCTGTGTTTCGGATCGTTTGTTGTTCCGTTCTTTGTT GACgtcttttttattcattagcTTCTCGACTTTCCTTTTTTAGAGAGGTT ATTCTCTCCTTTGAAACCTAACTTCAATCCATGATGTTCATCATTATCTG CTTCTTTCGTTGTAATGTTACTGTGAGCTTTTTGTCTGCTTGTTTTAATC CTCTCAAGTAAGAGCGGCGTTATTGTAATACAATTTGCACATTCGAAGCG CTGGCTTTTATATTGCAGAAAAAGCTGAATCTAATAAGCCGGGAGCTCAG AGCAAGCATAATGGACAAGTCTATCACATCTCCTACATTGTAAGGTATTG TTATCTGCTATGATGGTGTTTGTTAAACAGTTATTGGGTGTGCAATATCc ataattttgttgaatttccttAGAATTTTCGTTGATTTCTGCCATATTGG tacatgtcactagtccgacactttctagtcctacagtaaaatagtccgaa tctataaaataaatttacaatttagaagtTATTTTTTCcaacgtcacttt tgtccgaaaacgaaagattttagagtgtcgaatgtcCAATCCAATgtctt gactcttgaaagcctaatcctaataagcttcccaaaattcaagaaaagtC GAGTTTAGGGGCACTACCTCAAAGCAACGacctaataaaatagatagacc agtatcctattgaaatgatccgcgtaagaatgataaaaaaagtaatgatt ttttgcatcattaaaatgtcattccgcgtgcaaaagcatttttttaagat aagctattggttgatattgatcacatgacctaaattttgtgaatatgttc ttaatttcaagtcaaacttttaggcttaagaattagtaaacattgttaaa attataacatttgtatTTGGATAGTGTTTGTGTTTTCTATCTAGCACCAT GAACGCACGTTTATTTTCTTAGTTAgagtctttcaaaaatgtttatgttc ttaaagaaaatgcgctgtaaagcgcaacagtgttgtcgaaaaatattgaa aaatatcttgtgagaaagatgattaaaaatgcgACCTGACGTAAGCAAAA AAAATCGAAAATTATGTTTATGGTCAGTAGAAATTCgatataattgattt tacaccatttagagatgcttgtaaaaagtctaatttctttgtaatatgaC TTACGCGGGAGGTGGAAAGACGGCAagatgaaagaatacaaaatgaatag aaaacaaaagatttctaagagccattgtatgaagttcttggtctatctat tttattaagtcgttgctcaaagtcggaactttggatttttataagcacgt ggttgattataaaagatgtgccttctcttcggcgattcatatgtcgtttt atatgttttttttactcgttgtcggacaaagttgttgtcggaatactggc GCATtagtcaaatccaacgtcgggcatttttactgtcggactagaaagtg tcggactactgacgacctcccgtTGCATTTTTAGGATCAgttttttttcg ctgattttcgcgaaaaaccgcaaaaactgattatgacgtcataatcgatg acaacataaaaactaaaaattgaatttttcaagaATGGTGTATCCAATTA TTTTCagactttcaccaaagatgtatcttgcCAAaatcgatcatttgaaa aaaaatttcgaaattacgatgacgtcagcagaagtaaaaatcgaaaaacc ctattttttaTGCACTTGATCATTTCTAATTTGCTACTATTATTTGCTAt gatcaaatttaaatttattttgaaaatctgttcttgtttttatcttttta gagACTGGGTGTCACAACTGCTGACCCAAATGATCTACCCTATTTTCGGA CAGTAACTGACATTCACTCCTCCTCTGAGCACAATTCAATGTTTTGGGTT TGTTGTGGATCAAAATTATTCCATGGTAGTCAAGAATTTGCAATCAATAA AAGCTTGTATGGTTTGTCAGGGGTTAGTGATATTATTGGTGAGTAATAAA AACATTATTATGTTCATTGTAACTCTTATATTTATGTATCTTTGTTTAAT CGTCAAACAGGAAGAAGTTGAGaagttattttattttattgactACAAAT AATTATAAGCATATCCTTTAGAATTATGCAAATTATGTATTAATCTCTTA TTAATCCACAAAACTTACTTACTGCACGATTTAACGTCCGTTGTTCCCAG CAGCTGGGGTTGGACGCCTTCCTCTAATGACTGTACGCCAGGCTGCCCGA TCGTTAGTCATGTTGACAGTCGCATTAATAAATTTGAGGTCGTCTTTGAT ATTGTCTATCCATCTTTTTTTTGGTCTGCCTAAATATTTACCTTCCATAC CATGGGAAAGGATTCTGCTGAAAGTCTTCGTACATACGCTGAACATGGCC AAACCAGTGTAGCCTACCTTGACGTAGCAAATCGTCAATTGGAGCGATGC CAAGCCTATCTCTAAGGACATTCATAGAGACCCTTTCTGACAAACGTGTT GAACAAATCCAAATAACGTTGGTCTTACGGGTATTAACACGGAGGCCTTC TGCTTCAATTCCTTGCTTCCACTGAGCAAGCTCATCCTTTGATTCAACAA TAATAACAAGATCATCAGCGTAGTAGAATTGCTTCCTACACCCTTATAAC AAACAATACAAGGCCATTTACTTAATTTTTGTCTTTCACTCAGGCCATTT TTGCAGTGCATAACCTTGGTCTTAGGGGTGTTAACACGAAGGCCTTTTGC TTTAATTCCTTTCTTCCACTGAGCAAGCTTTAACAGATAATAATAACAAG ATCATGGACAGCCAGTTCGAAATTCTTGGGACAGAGCCTCCATAACAATT ATGAATAACAGACGACAAAACTTGTAGGAAATGACTTTTTGCttgttctt tttaattttttttatttcaatctgaaGGTATTCAAGTACGTCAAAATGGT CAGATGCATACATATAAAAATGGGGTTCACGTAGAGAATGTAGCTGAAGG ATTACCAGTAGATGTTGATTTGTATGTTATTGTGGATATCTATGGTGCAG TTACTAAAGTATCATGTTTACAAGATAAAGGTACAATTTCCTAAAAGCTT ATTCCTTTCCATGATAATTTTGATTAAAAGTTAGATATTCTTATCTTGAA ATTAAATGCTGTGTTGAAATACTTTCAACTTTCCTATTTCCGTTTCTATT TGGTTGAATGAGGCTCCGAGGcccattttttggaaaattatagATGCATC GTCAGGCATTGTATGTATAATGACCCCGTCAGCatcttggactgactacc cgaCTCCCCTTGATCGGGGCGAAGGTTCGTTCATtttccaagtgaaccgc tgcgagttgGAATCAAACTAAATAGTACATAGTTCCAGCGTTAAGATTGA TGACCACTATAACACAACGTTTTTCTCGTCAGTTTCCTAGTTATTCCTCC TCTTTTGAAACTTTAGACCATTACTTATACCTCTGcctgtgaaaatgata actGGTATCTTTTATTTTCTTACAGTTTTATCATTGAAAGAACACAGTCG GAGAGTTATACAAAATATTATCAAGGACGAAAATGACATAGACGATCTTA ACATTCCGAAAGTATTGAAAGTTTTCCTTAAATTATGATAAGATTGctgt ttcctttttttattttttgggtaAGTCTATGGTATAGCCAATTTtatatc caattttcagaagTTTTATGTGTTTTTTAAAGTTGGACTTAACAAAACAA GATACACTTGCAAAAAATATCTAtaggaaaaaaataactcagactcttct ttttcaatatttttacgctttagtttttctaataacccccttctcacaga cccaataAGATTTTTTCATCCAGTGGGGGATAAAAATGAAGGTCTGAAAC TCGATGTGGATTGATattcaaatatttattttggctggggatttcaattc ttttgttttcaagtcagaaaattcagtggggacgGGAAATATAGCAAAGT ATTTTTCAGtgaagattggtttatttgattattttcagttgggacaaaaa tttgagtagaattttccaccggggacgatattttggccaatttttccagt gggaaggggacccagtgggtctgtgagaaggggtgttctAATGTTCTATG TGTTGGTGTTCAAATGTAAAATATTCAGTAGTATAATTAAATGATGTACA tatttttgaagtatttttcaaattcctttttatatatgACAATCAAGATT CCGTAATTAGATTTTATTAGGTAAGTTTTACCTTCATATGCTagcaaata aaacaaatttgatgaaaaacctgaaaatatgGTGTTTTTGCTCCTTTCTC ACTATTATTTGGATCTTTATTAAGTATTTGTTACATGGCGCCCTGATCTG TATACGTCTTTATTGGgttgtatttttt

Coding sequence (CDS) from alignment at sc0000002:238454..246131+

>TCONS_00000422 ID=TCONS_00000422|Name=TCONS_00000422|organism=Clytia hemisphaerica|type=CDS|length=2508bp|location=Sequence derived from alignment at sc0000002:238454..246131+ (Clytia hemisphaerica)
ATGAAATTCCATGAAAGATGTGGTAAAAGTATATCATTTTCAAAGACTAG
AGATTGTGCAGAAAGAAAAGAGGGATATGATAATGGAATTGTGTTCAGCT
GCAAACCCTTAAAAAAAAGCCAGATTTTTGAAGTAAAAATTGATGCAATA
GAAGAAAAATGGGCTGGATCTATCagACTGGGTGTCACAACTGCTGACCC
AAATGATCTACCCTATTTTCGGACAGTAACTGACATTCACTCCTCCTCTG
AGCACAATTCAATGTTTTGGGTTTGTTGTGGATCAAAATTATTCCATGGT
AGTCAAGAATTTGCAATCAATAAAAGCTTGTATGGTTTGTCAGGGGTTAG
TGATATTATTGGTATTCAAGTACGTCAAAATGGTCAGATGCATACATATA
AAAATGGGGTTCACGTAGAGAATGTAGCTGAAGGATTACCAGTAGATGTT
GATTTGTATGTTATTGTGGATATCTATGGTGCAGTTACTAAAGTATCATG
TTTACAAGATAAAGTTTTATCATTGAAAGAACACAGTCGGAGAGTTATAC
AAAATATTATCAAGGACGAAAATGACATAGACGATCTTAACATTCCGAAA
GTATTGAAAGTTTTCCTTAAATTATGAATGAAATTCCATGAAAGATGTGG
TAAAAGTATATCATTTTCAAAGACTAGAGATTGTGCAGAAAGAAAAGAGG
GATATGATAATGGAATTGTGTTCAGCTGCAAACCCTTAAAAAAAAGCCAG
ATTTTTGAAGTAAAAATTGATGCAATAGAAGAAAAATGGGCTGGATCTAT
CagACTGGGTGTCACAACTGCTGACCCAAATGATCTACCCTATTTTCGGA
CAGTAACTGACATTCACTCCTCCTCTGAGCACAATTCAATGTTTTGGGTT
TGTTGTGGATCAAAATTATTCCATGGTAGTCAAGAATTTGCAATCAATAA
AAGCTTGTATGGTTTGTCAGGGGTTAGTGATATTATTGGTATTCAAGTAC
GTCAAAATGGTCAGATGCATACATATAAAAATGGGGTTCACGTAGAGAAT
GTAGCTGAAGGATTACCAGTAGATGTTGATTTGTATGTTATTGTGGATAT
CTATGGTGCAGTTACTAAAGTATCATGTTTACAAGATAAAGTTTTATCAT
TGAAAGAACACAGTCGGAGAGTTATACAAAATATTATCAAGGACGAAAAT
GACATAGACGATCTTAACATTCCGAAAGTATTGAAAGTTTTCCTTAAATT
ATGAATGAAATTCCATGAAAGATGTGGTAAAAGTATATCATTTTCAAAGA
CTAGAGATTGTGCAGAAAGAAAAGAGGGATATGATAATGGAATTGTGTTC
AGCTGCAAACCCTTAAAAAAAAGCCAGATTTTTGAAGTAAAAATTGATGC
AATAGAAGAAAAATGGGCTGGATCTATCagACTGGGTGTCACAACTGCTG
ACCCAAATGATCTACCCTATTTTCGGACAGTAACTGACATTCACTCCTCC
TCTGAGCACAATTCAATGTTTTGGGTTTGTTGTGGATCAAAATTATTCCA
TGGTAGTCAAGAATTTGCAATCAATAAAAGCTTGTATGGTTTGTCAGGGG
TTAGTGATATTATTGGTATTCAAGTACGTCAAAATGGTCAGATGCATACA
TATAAAAATGGGGTTCACGTAGAGAATGTAGCTGAAGGATTACCAGTAGA
TGTTGATTTGTATGTTATTGTGGATATCTATGGTGCAGTTACTAAAGTAT
CATGTTTACAAGATAAAGTTTTATCATTGAAAGAACACAGTCGGAGAGTT
ATACAAAATATTATCAAGGACGAAAATGACATAGACGATCTTAACATTCC
GAAAGTATTGAAAGTTTTCCTTAAATTATGAATGAAATTCCATGAAAGAT
GTGGTAAAAGTATATCATTTTCAAAGACTAGAGATTGTGCAGAAAGAAAA
GAGGGATATGATAATGGAATTGTGTTCAGCTGCAAACCCTTAAAAAAAAG
CCAGATTTTTGAAGTAAAAATTGATGCAATAGAAGAAAAATGGGCTGGAT
CTATCagACTGGGTGTCACAACTGCTGACCCAAATGATCTACCCTATTTT
CGGACAGTAACTGACATTCACTCCTCCTCTGAGCACAATTCAATGTTTTG
GGTTTGTTGTGGATCAAAATTATTCCATGGTAGTCAAGAATTTGCAATCA
ATAAAAGCTTGTATGGTTTGTCAGGGGTTAGTGATATTATTGGTATTCAA
GTACGTCAAAATGGTCAGATGCATACATATAAAAATGGGGTTCACGTAGA
GAATGTAGCTGAAGGATTACCAGTAGATGTTGATTTGTATGTTATTGTGG
ATATCTATGGTGCAGTTACTAAAGTATCATGTTTACAAGATAAAGTTTTA
TCATTGAAAGAACACAGTCGGAGAGTTATACAAAATATTATCAAGGACGA
AAATGACATAGACGATCTTAACATTCCGAAAGTATTGAAAGTTTTCCTTA
AATTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000274XLOC_000274Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000422-exon-sc0000002-1491911889:238454..238752TCONS_00000422-exon-sc0000002-1491911889:238454..238752Clytia hemisphaericaexon
TCONS_00000422-exon-sc0000002-1510915933:238454..238752TCONS_00000422-exon-sc0000002-1510915933:238454..238752Clytia hemisphaericaexon
TCONS_00000422-exon-sc0000002-1575043694:238454..238752TCONS_00000422-exon-sc0000002-1575043694:238454..238752Clytia hemisphaericaexon
TCONS_00000422-exon-sc0000002-1491911889:243505..243691TCONS_00000422-exon-sc0000002-1491911889:243505..243691Clytia hemisphaericaexon
TCONS_00000422-exon-sc0000002-1510915933:243505..243691TCONS_00000422-exon-sc0000002-1510915933:243505..243691Clytia hemisphaericaexon
TCONS_00000422-exon-sc0000002-1575043694:243505..243691TCONS_00000422-exon-sc0000002-1575043694:243505..243691Clytia hemisphaericaexon
TCONS_00000422-exon-sc0000002-1491911889:244631..244783TCONS_00000422-exon-sc0000002-1491911889:244631..244783Clytia hemisphaericaexon
TCONS_00000422-exon-sc0000002-1510915933:244631..244783TCONS_00000422-exon-sc0000002-1510915933:244631..244783Clytia hemisphaericaexon
TCONS_00000422-exon-sc0000002-1575043694:244631..244783TCONS_00000422-exon-sc0000002-1575043694:244631..244783Clytia hemisphaericaexon
TCONS_00000422-exon-sc0000002-1491911889:245229..246131TCONS_00000422-exon-sc0000002-1491911889:245229..246131Clytia hemisphaericaexon
TCONS_00000422-exon-sc0000002-1510915933:245229..246131TCONS_00000422-exon-sc0000002-1510915933:245229..246131Clytia hemisphaericaexon
TCONS_00000422-exon-sc0000002-1575043694:245229..246131TCONS_00000422-exon-sc0000002-1575043694:245229..246131Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000422-proteinTCONS_00000422-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:238454..246131 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.00817 3.91579 1.51584 2.88016 5.25468 3.2648 5.56765 5.96908 2.82042 4.37946 4.06909 3.56651 2.67115 4.62336 1.90051 3.67119 2.01004 2.06022 1.42316 2.97845 7.48944 4.73526 5.59368 6.22652 8.49691 8.33982 1.83574 3.81187 3.71486 4.54183
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006573NHR_dom
IPR024048VHL_alpha_dom
Blast
BLAST of TCONS_00000422 vs. Swiss-Prot (Human)
Match: NEUL4 (Neuralized-like protein 4 OS=Homo sapiens GN=NEURL4 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.336e-18
Identity = 49/148 (33.11%), Postives = 85/148 (57.43%), Query Frame = 3
Query:  114 SAKKMKFHERCGKSISFSKTRDCAERK---EGYDNGIVFSCKPLKKSQIFEVKIDAIEEKWAGSIRLGVTTADPNDLPYFRTVTDIHSSSEHNSMFWVCCGSKLFHGSQ----EFAINKSLYGLSGVSDIIGIQVRQNGQMHTYKNGV 536
            S   + FHE+CG  I  S     AER+   + ++NG+V + +PL+ +++FE++ID + +KW+GSI +GVTT +PN L Y  T+T++ S +   S   +    K   G++    EF++++   G     D IG+  + N  +H + NG+
Sbjct:  314 SNDALLFHEKCGTLIKLSNNNKTAERRRPLDEFNNGVVMTNRPLRDNEMFEIRIDKLVDKWSGSIEIGVTTHNPNSLEYPATMTNLQSGTIMMSGCGILTNGK---GTRREYCEFSLDELQEG-----DHIGLTRKSNSALHFFINGI 453          
The following BLAST results are available for this feature:
BLAST of TCONS_00000422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEUL41.336e-1833.11Neuralized-like protein 4 OS=Homo sapiens GN=NEURL... [more]
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