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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000399 ID=TCONS_00000399|Name=TCONS_00000399|organism=Clytia hemisphaerica|type=transcript|length=6592bpRun BLAST on NCBI protein sequence of TCONS_00000399-protein >TCONS_00000399-protein ID=TCONS_00000399-protein|Name=TCONS_00000399-protein|organism=Clytia hemisphaerica|type=polypeptide|length=975bp MTSGVIESLSTLSLETNTEDTETSLADTNTIHGSLDGDTSTEGSISPDLLRun BLAST on NCBI transcript from alignment at sc0000002:63815..100958+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000399 ID=TCONS_00000399|Name=TCONS_00000399|organism=Clytia hemisphaerica|type=transcript|length=37144bp|location=Sequence derived from alignment at sc0000002:63815..100958+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:63815..100958+ >TCONS_00000399 ID=TCONS_00000399|Name=TCONS_00000399|organism=Clytia hemisphaerica|type=CDS|length=32208bp|location=Sequence derived from alignment at sc0000002:63815..100958+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00000399 vs. Swiss-Prot (Human)
Match: LARP4 (La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3) HSP 1 Score: 216.853 bits (551), Expect = 8.903e-58 Identity = 99/174 (56.90%), Postives = 134/174 (77.01%), Query Frame = 1
Query: 712 STKDLTPDELKRSIQNQFEYYFSRENLANDQYLNSQMDSDQYVPISTVAKFNQVRKLTSDIDLIVDALRESPYVQLDETEQKVRANMKRCIVILREIPEVTPIEDVKALFASPNCPKWTSFEYAYNDNWYVTFECEDDAKKAYRYLREEVQSFQGRPLMARIKA-KTLLSRTVY 1230
S ++ ++LK ++ Q E+ FSRENL+ D YL SQMDSDQ++PI TVA +++KLT+D DLI++ LR SP VQ+DE +KVR + KRCIVILREIPE TPIE+VK LF S NCPK S E+A+N NWY+TF+ + DA++A++YLREEV++FQG+P+MARIKA T ++ Y
Sbjct: 110 SNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAKNGY 283 The following BLAST results are available for this feature:
BLAST of TCONS_00000399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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