TCONS_00000399-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000399-protein
Unique Name	TCONS_00000399-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	975

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000399-protein ID=TCONS_00000399-protein|Name=TCONS_00000399-protein|organism=Clytia hemisphaerica|type=polypeptide|length=975bp
MTSGVIESLSTLSLETNTEDTETSLADTNTIHGSLDGDTSTEGSISPDLL
ITNEVSQPLHQPTGHSAAAVASLNANAPAFTSISSMTPVLITKNIEIGNE
RWKPTATIVEENINSVPIHDLPQPYIAPDGLYYWPADMINGFPPQPVLIE
SLPNGTATVIQADHDSQQAFTQQNALVRPDIITQVSAPPPTPPINNVVIP
PSTKDLTPDELKRSIQNQFEYYFSRENLANDQYLNSQMDSDQYVPISTVA
KFNQVRKLTSDIDLIVDALRESPYVQLDETEQKVRANMKRCIVILREIPE
VTPIEDVKALFASPNCPKWTSFEYAYNDNWYVTFECEDDAKKAYRYLREE
VQSFQGRPLMARIKAKTLLSRTVYLPKNAASATGSTTTNTSPPADNVTSQ
FSTTGGVPAFTVSHPQQIFSPNFQPFYNTAPVNGNPGILPAGAQWISTTT
RFIPPEIRPKNNYNKYNNYQGNKQLNGQRPYFPGSKPRFRNNYNNPNKVP
FHERNGNVDYNSEDRPSNVPTNRRNNNPSGHNHQNVHNTNVNSNYRGRNS
EDPRFVRHSGPRKDWNRNSSEEGPRFQRLRERRGKDDTGGSSSTSSTKDE
KMSSHSKNPSSKHDKSSISSNEGSEDSSNAPQINGDLNLDLALDFPALPS
PNSPNETGSNGSANRSASSLKELAANVLSEVESNKEKPMTTSPADMSELL
TTAEVFEPAATEPAQTTTTNANENAPLITTVVSTDNGIPKMLSYAQMAQK
PNSNKENFVNDIDTAKDISDAVAASDPKKSSNNKTENGKNGQSANGKQNR
KPGSKNSPRSQRRKSNGQDKSAEVEQMSVSSNLTNTVMKETYASKFGSSS
DSSRTGNSPSRPKTQPTTNTNSINKQNPPSTNNKNNSGLPALRPLMSQVI
NPPVSKMDEINGLELQQQQPISFSDTVKKQSSIEPSTPTSPRSIDLNSVS
SPPSSNTVSQPPETSSTIEAPKEKS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000269	XLOC_000269	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000399	TCONS_00000399	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006630	La_HTH
IPR011991	WHTH_DNA-bd_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 209..287 e-value: 6.9E-38 score: 141.9
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 215..271 e-value: 8.5E-21 score: 73.7
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 205..294 score: 24.88
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 201..293 e-value: 8.3E-30 score: 102.0
IPR011991	Winged helix-turn-helix DNA-binding domain	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 206..297
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 769..975
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 380..402
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 454..695
None	No IPR available	CDD	cd12430	RRM_LARP4_5_like	coord: 291..366 e-value: 8.27782E-38 score: 135.923

Blast

[Close]

BLAST of TCONS_00000399-protein vs. Swiss-Prot (Human)
Match: LARP4 (La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 6.688e-63
Identity = 138/341 (40.47%), Postives = 195/341 (57.18%), Query Frame = 0

Query:  206 LTPDELKRSIQNQFEYYFSRENLANDQYLNSQMDSDQYVPISTVAKFNQVRKLTSDIDLIVDALRESPYVQLDETEQKVRANMKRCIVILREIPEVTPIEDVKALFASPNCPKWTSFEYAYNDNWYVTFECEDDAKKAYRYLREEVQSFQGRPLMARIKA-KTLLSRTVYLPKNAASATGSTTTN---TSP----PADNVTSQFSTTGGVPAFTVSHPQQIFSPNFQPFYNT--APVNGNPGILPAGAQWISTTTRFIPPEIRPKNNYNKYNNYQGN-KQLNGQRPYFPGS-KPRFRNNYNNPNKVPFHERNGNVDYNSEDRPSNVPTNRRNNNPSGHNHQ 534
            ++ ++LK  ++ Q E+ FSRENL+ D YL SQMDSDQ++PI TVA   +++KLT+D DLI++ LR SP VQ+DE  +KVR + KRCIVILREIPE TPIE+VK LF S NCPK  S E+A+N NWY+TF+ + DA++A++YLREEV++FQG+P+MARIKA  T  ++  Y   +++  +    T     SP    P  N   Q+S    VP        Q +SPN  P++ T  AP        P G+        F+       N +N   +Y+ N   +N  RP+     KP+FR++  + +        G+   N      N P  R N   +GH  Q
Sbjct:  114 VSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAKNGYRLMDSSIYSHPIQTQAQYASPVFMQPVYNPHQQYSVYSIVP--------QSWSPNPTPYFETPLAP-------FPNGS--------FV-------NGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDGQLNRYSS-RNFPAERHNPTVTGHQEQ 423

The following BLAST results are available for this feature:

BLAST of TCONS_00000399-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000399-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
LARP4	6.688e-63	40.47	La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1...	[more]

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TCONS_00000399-protein (polypeptide) - C. hemisphaerica

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