TCONS_00000399-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000399-protein
Unique NameTCONS_00000399-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length975

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000399-protein ID=TCONS_00000399-protein|Name=TCONS_00000399-protein|organism=Clytia hemisphaerica|type=polypeptide|length=975bp
MTSGVIESLSTLSLETNTEDTETSLADTNTIHGSLDGDTSTEGSISPDLL
ITNEVSQPLHQPTGHSAAAVASLNANAPAFTSISSMTPVLITKNIEIGNE
RWKPTATIVEENINSVPIHDLPQPYIAPDGLYYWPADMINGFPPQPVLIE
SLPNGTATVIQADHDSQQAFTQQNALVRPDIITQVSAPPPTPPINNVVIP
PSTKDLTPDELKRSIQNQFEYYFSRENLANDQYLNSQMDSDQYVPISTVA
KFNQVRKLTSDIDLIVDALRESPYVQLDETEQKVRANMKRCIVILREIPE
VTPIEDVKALFASPNCPKWTSFEYAYNDNWYVTFECEDDAKKAYRYLREE
VQSFQGRPLMARIKAKTLLSRTVYLPKNAASATGSTTTNTSPPADNVTSQ
FSTTGGVPAFTVSHPQQIFSPNFQPFYNTAPVNGNPGILPAGAQWISTTT
RFIPPEIRPKNNYNKYNNYQGNKQLNGQRPYFPGSKPRFRNNYNNPNKVP
FHERNGNVDYNSEDRPSNVPTNRRNNNPSGHNHQNVHNTNVNSNYRGRNS
EDPRFVRHSGPRKDWNRNSSEEGPRFQRLRERRGKDDTGGSSSTSSTKDE
KMSSHSKNPSSKHDKSSISSNEGSEDSSNAPQINGDLNLDLALDFPALPS
PNSPNETGSNGSANRSASSLKELAANVLSEVESNKEKPMTTSPADMSELL
TTAEVFEPAATEPAQTTTTNANENAPLITTVVSTDNGIPKMLSYAQMAQK
PNSNKENFVNDIDTAKDISDAVAASDPKKSSNNKTENGKNGQSANGKQNR
KPGSKNSPRSQRRKSNGQDKSAEVEQMSVSSNLTNTVMKETYASKFGSSS
DSSRTGNSPSRPKTQPTTNTNSINKQNPPSTNNKNNSGLPALRPLMSQVI
NPPVSKMDEINGLELQQQQPISFSDTVKKQSSIEPSTPTSPRSIDLNSVS
SPPSSNTVSQPPETSSTIEAPKEKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000269XLOC_000269Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000399TCONS_00000399Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006630La_HTH
IPR011991WHTH_DNA-bd_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006630La-type HTH domainSMARTSM00715lacoord: 209..287
e-value: 6.9E-38
score: 141.9
IPR006630La-type HTH domainPFAMPF05383Lacoord: 215..271
e-value: 8.5E-21
score: 73.7
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 205..294
score: 24.88
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 201..293
e-value: 8.3E-30
score: 102.0
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 206..297
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 769..975
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 380..402
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 454..695
NoneNo IPR availableCDDcd12430RRM_LARP4_5_likecoord: 291..366
e-value: 8.27782E-38
score: 135.923

Blast
[Close]
BLAST of TCONS_00000399-protein vs. Swiss-Prot (Human)
Match: LARP4 (La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 6.688e-63
Identity = 138/341 (40.47%), Postives = 195/341 (57.18%), Query Frame = 0 
Query:  206 LTPDELKRSIQNQFEYYFSRENLANDQYLNSQMDSDQYVPISTVAKFNQVRKLTSDIDLIVDALRESPYVQLDETEQKVRANMKRCIVILREIPEVTPIEDVKALFASPNCPKWTSFEYAYNDNWYVTFECEDDAKKAYRYLREEVQSFQGRPLMARIKA-KTLLSRTVYLPKNAASATGSTTTN---TSP----PADNVTSQFSTTGGVPAFTVSHPQQIFSPNFQPFYNT--APVNGNPGILPAGAQWISTTTRFIPPEIRPKNNYNKYNNYQGN-KQLNGQRPYFPGS-KPRFRNNYNNPNKVPFHERNGNVDYNSEDRPSNVPTNRRNNNPSGHNHQ 534
            ++ ++LK  ++ Q E+ FSRENL+ D YL SQMDSDQ++PI TVA   +++KLT+D DLI++ LR SP VQ+DE  +KVR + KRCIVILREIPE TPIE+VK LF S NCPK  S E+A+N NWY+TF+ + DA++A++YLREEV++FQG+P+MARIKA  T  ++  Y   +++  +    T     SP    P  N   Q+S    VP        Q +SPN  P++ T  AP        P G+        F+       N +N   +Y+ N   +N  RP+     KP+FR++  + +        G+   N      N P  R N   +GH  Q
Sbjct:  114 VSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAKNGYRLMDSSIYSHPIQTQAQYASPVFMQPVYNPHQQYSVYSIVP--------QSWSPNPTPYFETPLAP-------FPNGS--------FV-------NGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDGQLNRYSS-RNFPAERHNPTVTGHQEQ 423
The following BLAST results are available for this feature:
BLAST of TCONS_00000399-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LARP46.688e-6340.47La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1... [more]
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