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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000395 ID=TCONS_00000395|Name=TCONS_00000395|organism=Clytia hemisphaerica|type=transcript|length=1568bp GTAAAGGGAAAGGTCATCATTTTCGAGCTTTGTTGAAACTCAGCAAAAAG GTTTTTGAGCCATcttataaaagtttttgaacCGTAATAACATCGGCGCG ATACTTTGGTGGAACTTATAAGTGAAATCGCTCACATTTTAGTGTGCTCG GAACTTACAATGTTAACTAGCTATATCTCACACGAGCGCGAACGCAGGAT GACGTGGCCCTATAATCCAGTACCATCCTATCATGTACCACACCATGGAC CATATAACTTCCCTGGACATTACCCCCTGAATTATTACGgATATCCAAGA AAGCAAAGACGTGAGCGTACAACATTTACCAAAGGACAATTAGAAATATT GGAGAATTTATTCCGTGAGACGAAGTACCCTGATGTTTTTATGCGCGAAG ACGTAGCAAGAAGAATCAGCCTACCTGAATCTAGAGTCCAGGTTTGGTTT AAAAACAGGCGTGCAAAACACCGACAGAAATCCAAGAAATCATCATCTAC ATCACAAAGTACGAACTCAGATTCCAGTCCTGAACGAGGAGACCGTTCGC CTGCCCTCCAATCTCCTAACTCTGATAAATCACACAACATTGACCCACCA CCACTTTCGTCACCGGCAAAACCGAACCATAGCAACAGCAACCATAGCAA CAGCAACCATAGCAGCAGtaataacaacaataataatgGCAGTAATGGAA ACACAACATCAGAATCAACAAACGAGTTTAATAACAACAAATCCCAATGC ACATTCAATAACAACCATTTACCTCAAAATCCATTAACACCAACCACGCC TACAAACACGGGCGGATATCCGCCACTCGAAAGAGCACCCTCGTATCCTA ACTACATCCCTCAATCTTTCCAGCAATCGCAAAGAGGATATGGTGGACAA TCAGATTCGTCATACTGTCCATATTCACCGACCAGCGGTCGTCAATCTTT CTACCAATCCTCACATCTGCACCCACATTCAACTAGCGATTACCAGCCAT GTGCAGTAGATGTTCATGGCTCTACACCTTTAAGTCCTGGTTGGAATACA TATGGTCCGAACATATGAGACTAGTTTAAATAACTACATTTAAGTGATTC ACCAAAGAATAGtgatgtcagatctaacaagtTTCCCACAATCTAACAAG ATCGAAGTGACACAAACTAAACCCTAATTGAAAATAAGACAGAGACATGT CTCTTTAAGAAATGGTTAGTGGTTTCCGCATATTCAATTGTTGATAAAAC AGTAGAAGAAGTAATTGGTAGCGAACCAACGACAGGATAACTCTTAATTC CGAAATTCTGTATGCGCGGCAAGGGAAAAAGGAAACTTAATTTATTCAGG TCATATTGGCTTTTAATTTAGTTTGAAACAAGATTTCTCATCTCGCCTAT CAgttttctgttttcaaatttgaaatgtaaTAAATTGTAAAGAGCTGAAA CTGCAGAAAATTTAGAACGatacaatttctttttttaaagatattttttt gaacttttagaaatttttcgtttttccaaTAATTCTAAGACAAACGAATA TATTATTGTGTATAGCTg Run BLAST on NCBI protein sequence of Otx-related-1 >TCONS_00000395-protein ID=TCONS_00000395-protein|Name=Otx-related-1|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MLTSYISHERERRMTWPYNPVPSYHVPHHGPYNFPGHYPLNYYGYPRKQR RERTTFTKGQLEILENLFRETKYPDVFMREDVARRISLPESRVQVWFKNR RAKHRQKSKKSSSTSQSTNSDSSPERGDRSPALQSPNSDKSHNIDPPPLS SPAKPNHSNSNHSNSNHSSSNNNNNNGSNGNTTSESTNEFNNNKSQCTFN NNHLPQNPLTPTTPTNTGGYPPLERAPSYPNYIPQSFQQSQRGYGGQSDS SYCPYSPTSGRQSFYQSSHLHPHSTSDYQPCAVDVHGSTPLSPGWNTYGP NI Run BLAST on NCBI transcript from alignment at sc0000002:20126..24246+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000395 ID=TCONS_00000395|Name=TCONS_00000395|organism=Clytia hemisphaerica|type=transcript|length=4121bp|location=Sequence derived from alignment at sc0000002:20126..24246+ (Clytia hemisphaerica) GTAAAGGGAAAGGTCATCATTTTCGAGCTTTGTTGAAACTCAGCAAAAAG
GTTTTTGAGCCATcttataaaagtttttgaacCGTAATAACATCGGCGCG
ATACTTTGGTGGAACTTATAAGTGAAATCGCTCACATTTTAGTGTGCTCG
GAACTTACAATGTTAACTAGCTATGTAAGTATACAATGAAGTCTTGAATT
GAAAAAAGGCTTGCCAAAGACAGGGGCCAcggctccactttgaaagtATT
AGGGCCACATAATATACTGACTAAGGAGACGCCACTGGATGGGGCCGACG
GGTGAAAAGCAATTTTTAGCTCTTTTAGATTACCTAAAACAGACCTGTTT
TAGGCGATCTGAAGGTTTAAGGTTATTAAACAGAATTTGACTTGAttggt
aaattttctttttgttttgaaaaaatgtgccTCCCCCCCGCTGGCGCAGC
GCCTGTAAAGACTACTATTGGTTAATGTCAGAGGATGCTATCGTCTGTTA
GAGGGACAGTTAACGCTGGGAAAACTTATAAGCGCGTAGTTTACTGTCGT
AATGAGGGGTTACGGAAAGAATAGTGGCGGAAAAGTTAGGAACAAACACT
GCTAGCACAGTAAAAACCGTCATCAATGTTCACCTTGTACCGGGCTTATC
TTCGGCACTCAAATTAATCCCACTTTCTAAATTATTTCCGTTTTAGTGAT
CTTGTCTAAGTTGATCTTTGCTTTAGAATTTTAGACAGTAAAGTACAGTA
AGAACGGGAGTACAATACAAACacaatattcaatttcaaaatattatagt
aaaagattttttcaagtgACTCTTCGATACTGAATAAATTCAACTTACGC
GACATTGAGAACGTTGGGTTACAAAAAGATTAGGTTAATGGGTCAAGGAG
AAACACTCTTCCTCCAAAGCGAAGGTTTGAAAACAGACTTATCTTTTCCC
AAGCTAATTAATTTACCTTTCAACATTGCAACATGCATAGTGcggttttt
tttgtcaaataagGCCACATATCAACCTTAACTATCGAGACTTTATGAGA
AAACTTTActtaaaataagagaaaaactGACCCTCAAAATTAGGATTTTA
CTAATATCAAAATAGTATTAGTTCGATAAGGGGAGCTTCAGGAAGCAGCA
AGGTGGCGATACATGTAGAGTTCGTTACTTTGCCAAAAAGAAATTACGAA
ACCCTGCTAATGTTAATTACTAGTTTGTTAGCGTTTTTTGCAAGATGATA
TGTGATATCTTCAATTCAATTTTCGGATGATCATGACAGAAGGCTGATAA
TCTGGTTAAAGCGTTACCTACTCACCATTAGCTCTGGATCATATACCACA
CATTAACTAAATCGAGATCTCAAATACTTTATTAATATTGACATTGTgtt
taacttatttttaacaTCTTTATTTCAGATCTCACACGAGCGCGAACGCA
GGATGACGTGGCCCTATAATCCAGTACCATCCTATCATGTACCACACCAT
GGACCATATAACTTCCCTGGACATTACCCCCTGAATTATTACGGTAAgac
ttttcaaactcgagatgtATAAAAGTCAAAACCTCAAAACGGCGCTAATT
TTTCGCTGCCAGACCCTGCTGAAAATATCTGAATTTTCACTTTTgaagaa
aaaggtcaaattctGTTTTTCGAGTAATTCTGGTAAACGAAGAATACCTT
AAAAAGACTAGTAATATTTCCGTTGGTTGAAATTGTCACAAATACCAAAT
ACAGAACTAAGCGTTACGTACTTTCATTGGTACAACAAAACGGAGGAAAG
TTAAACTCggtaatattgaaaataaaacgaAAAGTAACTAACTTACAGTC
TCATGGTACAGTTTCCATTCTACTTCACTCGACTGTCTTTTCCTAAagga
atacatgtttttttttataagcatacaaaaatccgaaaacaggctcaaag
atgcttaggtcgaaagcttaataatgctgaaaaatgcttgaggggatgct
taaatctaaagcataaatttaaggaaatacaaaaaatccgtaaaattcca
gccaaaaaaagccaaaatcaggaaaaacatttttcgtaggctcaagttat
gcttgccatatgcttaatttttccccatatctgagcctagatatgcttat
aagtacaatgcttataaaaaaaataatttAGATTTCTAGGtaataatatt
taaaatattttgttaaatttcaggATATCCAAGAAAGCAAAGACGTGAGC
GTACAACATTTACCAAAGGACAATTAGAAATATTGGAGAATTTATTCCGT
GAGACGAAGTACCCTGATGTTTTTATGCGCGAAGACGTAGCAAGAAGAAT
CAGCCTACCTGAATCTAGAGTCCAGGTTAGTTATTATGAAATCTCAACAT
CTTCTGATATTATGATAATCTTCATCGCACAACCTATAACACAAGtataa
taaagaaatattaaggAGCAATATGTGAGTGGTCTAAAGCAATTAGCTCA
TAGATAGCCGAAATCGCTGGCCCTGTTAAAATAATGGAAACGCGGTCTAT
GGGTTGTAGACTACTGGGGTATCTATGTAAAATAAAGACTTTATGcagaa
agtttttgtttgtttttgtttttgtaatgaaaaattaactctggcTGGCC
GGCGAATTCATAGCAAACGCAGTGTATTTATTAGcgtaaatatgtacttg
aggcgAACCGAACTTTTCGAACGGCTAATTGTAATTATTTTCGTACCTTG
GACCGTCGAAATTCGCCGTTTGCCGGGCCTAAATAAGACCCTTAAGCTTT
ATGTATCTAATACATTGCAAGTTTTGGCTGATTCGAACACGATCGGGAAC
TtctttgttcgaattataggagATGAAAGCATTTAATAAGAGGCTCCACT
TGACGAAATTTAGTCCAAATTATAAAGAGATTAAAATAATAGAAATCGAT
AATCTCCGAttatttaacattttcaaacttttttcatattccaGGTTTGG
TTTAAAAACAGGCGTGCAAAACACCGACAGAAATCCAAGAAATCATCATC
TACATCACAAAGTACGAACTCAGATTCCAGTCCTGAACGAGGAGACCGTT
CGCCTGCCCTCCAATCTCCTAACTCTGATAAATCACACAACATTGACCCA
CCACCACTTTCGTCACCGGCAAAACCGAACCATAGCAACAGCAACCATAG
CAACAGCAACCATAGCAGCAGtaataacaacaataataatgGCAGTAATG
GAAACACAACATCAGAATCAACAAACGAGTTTAATAACAACAAATCCCAA
TGCACATTCAATAACAACCATTTACCTCAAAATCCATTAACACCAACCAC
GCCTACAAACACGGGCGGATATCCGCCACTCGAAAGAGCACCCTCGTATC
CTAACTACATCCCTCAATCTTTCCAGCAATCGCAAAGAGGATATGGTGGA
CAATCAGATTCGTCATACTGTCCATATTCACCGACCAGCGGTCGTCAATC
TTTCTACCAATCCTCACATCTGCACCCACATTCAACTAGCGATTACCAGC
CATGTGCAGTAGATGTTCATGGCTCTACACCTTTAAGTCCTGGTTGGAAT
ACATATGGTCCGAACATATGAGACTAGTTTAAATAACTACATTTAAGTGA
TTCACCAAAGAATAGtgatgtcagatctaacaagtTTCCCACAATCTAAC
AAGATCGAAGTGACACAAACTAAACCCTAATTGAAAATAAGACAGAGACA
TGTCTCTTTAAGAAATGGTTAGTGGTTTCCGCATATTCAATTGTTGATAA
AACAGTAGAAGAAGTAATTGGTAGCGAACCAACGACAGGATAACTCTTAA
TTCCGAAATTCTGTATGCGCGGCAAGGGAAAAAGGAAACTTAATTTATTC
AGGTCATATTGGCTTTTAATTTAGTTTGAAACAAGATTTCTCATCTCGCC
TATCAgttttctgttttcaaatttgaaatgtaaTAAATTGTAAAGAGCTG
AAACTGCAGAAAATTTAGAACGatacaatttctttttttaaagatatttt
tttgaacttttagaaatttttcgtttttccaaTAATTCTAAGACAAACGA
ATATATTATTGTGTATAGCTg Coding sequence (CDS) from alignment at sc0000002:20126..24246+ >TCONS_00000395 ID=TCONS_00000395|Name=TCONS_00000395|organism=Clytia hemisphaerica|type=CDS|length=3636bp|location=Sequence derived from alignment at sc0000002:20126..24246+ (Clytia hemisphaerica) ATGTTAACTAGCTATATCTCACACGAGCGCGAACGCAGGATGACGTGGCC CTATAATCCAGTACCATCCTATCATGTACCACACCATGGACCATATAACT TCCCTGGACATTACCCCCTGAATTATTACGgATATCCAAGAAAGCAAAGA CGTGAGCGTACAACATTTACCAAAGGACAATTAGAAATATTGGAGAATTT ATTCCGTGAGACGAAGTACCCTGATGTTTTTATGCGCGAAGACGTAGCAA GAAGAATCAGCCTACCTGAATCTAGAGTCCAGGTTTGGTTTAAAAACAGG CGTGCAAAACACCGACAGAAATCCAAGAAATCATCATCTACATCACAAAG TACGAACTCAGATTCCAGTCCTGAACGAGGAGACCGTTCGCCTGCCCTCC AATCTCCTAACTCTGATAAATCACACAACATTGACCCACCACCACTTTCG TCACCGGCAAAACCGAACCATAGCAACAGCAACCATAGCAACAGCAACCA TAGCAGCAGtaataacaacaataataatgGCAGTAATGGAAACACAACAT CAGAATCAACAAACGAGTTTAATAACAACAAATCCCAATGCACATTCAAT AACAACCATTTACCTCAAAATCCATTAACACCAACCACGCCTACAAACAC GGGCGGATATCCGCCACTCGAAAGAGCACCCTCGTATCCTAACTACATCC CTCAATCTTTCCAGCAATCGCAAAGAGGATATGGTGGACAATCAGATTCG TCATACTGTCCATATTCACCGACCAGCGGTCGTCAATCTTTCTACCAATC CTCACATCTGCACCCACATTCAACTAGCGATTACCAGCCATGTGCAGTAG ATGTTCATGGCTCTACACCTTTAAGTCCTGGTTGGAATACATATGGTCCG AACATATGAATGTTAACTAGCTATATCTCACACGAGCGCGAACGCAGGAT GACGTGGCCCTATAATCCAGTACCATCCTATCATGTACCACACCATGGAC CATATAACTTCCCTGGACATTACCCCCTGAATTATTACGgATATCCAAGA AAGCAAAGACGTGAGCGTACAACATTTACCAAAGGACAATTAGAAATATT GGAGAATTTATTCCGTGAGACGAAGTACCCTGATGTTTTTATGCGCGAAG ACGTAGCAAGAAGAATCAGCCTACCTGAATCTAGAGTCCAGGTTTGGTTT AAAAACAGGCGTGCAAAACACCGACAGAAATCCAAGAAATCATCATCTAC ATCACAAAGTACGAACTCAGATTCCAGTCCTGAACGAGGAGACCGTTCGC CTGCCCTCCAATCTCCTAACTCTGATAAATCACACAACATTGACCCACCA CCACTTTCGTCACCGGCAAAACCGAACCATAGCAACAGCAACCATAGCAA CAGCAACCATAGCAGCAGtaataacaacaataataatgGCAGTAATGGAA ACACAACATCAGAATCAACAAACGAGTTTAATAACAACAAATCCCAATGC ACATTCAATAACAACCATTTACCTCAAAATCCATTAACACCAACCACGCC TACAAACACGGGCGGATATCCGCCACTCGAAAGAGCACCCTCGTATCCTA ACTACATCCCTCAATCTTTCCAGCAATCGCAAAGAGGATATGGTGGACAA TCAGATTCGTCATACTGTCCATATTCACCGACCAGCGGTCGTCAATCTTT CTACCAATCCTCACATCTGCACCCACATTCAACTAGCGATTACCAGCCAT GTGCAGTAGATGTTCATGGCTCTACACCTTTAAGTCCTGGTTGGAATACA TATGGTCCGAACATATGAATGTTAACTAGCTATATCTCACACGAGCGCGA ACGCAGGATGACGTGGCCCTATAATCCAGTACCATCCTATCATGTACCAC ACCATGGACCATATAACTTCCCTGGACATTACCCCCTGAATTATTACGgA TATCCAAGAAAGCAAAGACGTGAGCGTACAACATTTACCAAAGGACAATT AGAAATATTGGAGAATTTATTCCGTGAGACGAAGTACCCTGATGTTTTTA TGCGCGAAGACGTAGCAAGAAGAATCAGCCTACCTGAATCTAGAGTCCAG GTTTGGTTTAAAAACAGGCGTGCAAAACACCGACAGAAATCCAAGAAATC ATCATCTACATCACAAAGTACGAACTCAGATTCCAGTCCTGAACGAGGAG ACCGTTCGCCTGCCCTCCAATCTCCTAACTCTGATAAATCACACAACATT GACCCACCACCACTTTCGTCACCGGCAAAACCGAACCATAGCAACAGCAA CCATAGCAACAGCAACCATAGCAGCAGtaataacaacaataataatgGCA GTAATGGAAACACAACATCAGAATCAACAAACGAGTTTAATAACAACAAA TCCCAATGCACATTCAATAACAACCATTTACCTCAAAATCCATTAACACC AACCACGCCTACAAACACGGGCGGATATCCGCCACTCGAAAGAGCACCCT CGTATCCTAACTACATCCCTCAATCTTTCCAGCAATCGCAAAGAGGATAT GGTGGACAATCAGATTCGTCATACTGTCCATATTCACCGACCAGCGGTCG TCAATCTTTCTACCAATCCTCACATCTGCACCCACATTCAACTAGCGATT ACCAGCCATGTGCAGTAGATGTTCATGGCTCTACACCTTTAAGTCCTGGT TGGAATACATATGGTCCGAACATATGAATGTTAACTAGCTATATCTCACA CGAGCGCGAACGCAGGATGACGTGGCCCTATAATCCAGTACCATCCTATC ATGTACCACACCATGGACCATATAACTTCCCTGGACATTACCCCCTGAAT TATTACGgATATCCAAGAAAGCAAAGACGTGAGCGTACAACATTTACCAA AGGACAATTAGAAATATTGGAGAATTTATTCCGTGAGACGAAGTACCCTG ATGTTTTTATGCGCGAAGACGTAGCAAGAAGAATCAGCCTACCTGAATCT AGAGTCCAGGTTTGGTTTAAAAACAGGCGTGCAAAACACCGACAGAAATC CAAGAAATCATCATCTACATCACAAAGTACGAACTCAGATTCCAGTCCTG AACGAGGAGACCGTTCGCCTGCCCTCCAATCTCCTAACTCTGATAAATCA CACAACATTGACCCACCACCACTTTCGTCACCGGCAAAACCGAACCATAG CAACAGCAACCATAGCAACAGCAACCATAGCAGCAGtaataacaacaata ataatgGCAGTAATGGAAACACAACATCAGAATCAACAAACGAGTTTAAT AACAACAAATCCCAATGCACATTCAATAACAACCATTTACCTCAAAATCC ATTAACACCAACCACGCCTACAAACACGGGCGGATATCCGCCACTCGAAA GAGCACCCTCGTATCCTAACTACATCCCTCAATCTTTCCAGCAATCGCAA AGAGGATATGGTGGACAATCAGATTCGTCATACTGTCCATATTCACCGAC CAGCGGTCGTCAATCTTTCTACCAATCCTCACATCTGCACCCACATTCAA CTAGCGATTACCAGCCATGTGCAGTAGATGTTCATGGCTCTACACCTTTA AGTCCTGGTTGGAATACATATGGTCCGAACATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000395-exon-sc0000002-1491911889:20126..20299 | TCONS_00000395-exon-sc0000002-1491911889:20126..20299 | Clytia hemisphaerica | exon |
TCONS_00000395-exon-sc0000002-1510915933:20126..20299 | TCONS_00000395-exon-sc0000002-1510915933:20126..20299 | Clytia hemisphaerica | exon |
TCONS_00000395-exon-sc0000002-1575043694:20126..20299 | TCONS_00000395-exon-sc0000002-1575043694:20126..20299 | Clytia hemisphaerica | exon |
TCONS_00000395-exon-sc0000002-1491911889:21554..21668 | TCONS_00000395-exon-sc0000002-1491911889:21554..21668 | Clytia hemisphaerica | exon |
TCONS_00000395-exon-sc0000002-1510915933:21554..21668 | TCONS_00000395-exon-sc0000002-1510915933:21554..21668 | Clytia hemisphaerica | exon |
TCONS_00000395-exon-sc0000002-1575043694:21554..21668 | TCONS_00000395-exon-sc0000002-1575043694:21554..21668 | Clytia hemisphaerica | exon |
TCONS_00000395-exon-sc0000002-1491911889:22349..22500 | TCONS_00000395-exon-sc0000002-1491911889:22349..22500 | Clytia hemisphaerica | exon |
TCONS_00000395-exon-sc0000002-1510915933:22349..22500 | TCONS_00000395-exon-sc0000002-1510915933:22349..22500 | Clytia hemisphaerica | exon |
TCONS_00000395-exon-sc0000002-1575043694:22349..22500 | TCONS_00000395-exon-sc0000002-1575043694:22349..22500 | Clytia hemisphaerica | exon |
TCONS_00000395-exon-sc0000002-1491911889:23120..24246 | TCONS_00000395-exon-sc0000002-1491911889:23120..24246 | Clytia hemisphaerica | exon |
TCONS_00000395-exon-sc0000002-1510915933:23120..24246 | TCONS_00000395-exon-sc0000002-1510915933:23120..24246 | Clytia hemisphaerica | exon |
TCONS_00000395-exon-sc0000002-1575043694:23120..24246 | TCONS_00000395-exon-sc0000002-1575043694:23120..24246 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000002 | supercontig | sc0000002:20126..24246 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0003677 | DNA binding |
GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
molecular_function |
GO:0003677 |
DNA binding |
molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00000395 vs. Swiss-Prot (Human)
Match: OTX2 (Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.756e-26 Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1
Query: 268 HYPLNYYGYPRKQRRERTTFTKGQLEILENLFRETKYPDVFMREDVARRISLPESRVQVWFKNRRAKHR 474
H + Y PRKQRRERTTFT+ QL++LE LF +T+YPD+FMRE+VA +I+LPESRVQVWFKNRRAK R
Sbjct: 26 HPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 94
The following BLAST results are available for this feature:
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