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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000393 ID=TCONS_00000393|Name=TCONS_00000393|organism=Clytia hemisphaerica|type=transcript|length=1802bp
CAGCGGGTGACTTTAATACAAAAATCTTTTAGCATCAACTTATACGTAGG
ggattcttaaaaaaaattcagagaCTGTCATTTTAAGCATTCGACTCGCT
CGGAACAAGACGGAATTAAATAATTTGAAGTATATCATAAACATTTCAAt
tgtttatttacatttttgatTATTAAAAAAAGGGGATTTTGAAGATTTAC
AATCATCATCATTTAGTATAAAACTCTTTTAATGATCAAGAAATTTGTTA
ATTGCATTTTATGATAATTATCATCAACAGCTAACGAGAATTCATCAGAC
ATTTTTGAAGTACTATTCAGACTGACTGGAGATTTGAATATCGGACAAAA
CTTTGAATTATAACCGGacagttgatttcgttttggaCAACGTTGACCTT
ACTTTCAGATCTCACACGAGCGCGAACGCAGGATGACGTGGCCCTATAAT
CCAGTACCATCCTATCATGTACCACACCATGGACCATATAACTTCCCTGG
ACATTACCCCCTGAATTATTACGgATATCCAAGAAAGCAAAGACGTGAGC
GTACAACATTTACCAAAGGACAATTAGAAATATTGGAGAATTTATTCCGT
GAGACGAAGTACCCTGATGTTTTTATGCGCGAAGACGTAGCAAGAAGAAT
CAGCCTACCTGAATCTAGAGTCCAGGTTTGGTTTAAAAACAGGCGTGCAA
AACACCGACAGAAATCCAAGAAATCATCATCTACATCACAAAGTACGAAC
TCAGATTCCAGTCCTGAACGAGGAGACCGTTCGCCTGCCCTCCAATCTCC
TAACTCTGATAAATCACACAACATTGACCCACCACCACTTTCGTCACCGG
CAAAACCGAACCATAGCAACAGCAACCATAGCAACAGCAACCATAGCAGC
AGtaataacaacaataataatgGCAGTAATGGAAACACAACATCAGAATC
AACAAACGAGTTTAATAACAACAAATCCCAATGCACATTCAATAACAACC
ATTTACCTCAAAATCCATTAACACCAACCACGCCTACAAACACGGGCGGA
TATCCGCCACTCGAAAGAGCACCCTCGTATCCTAACTACATCCCTCAATC
TTTCCAGCAATCGCAAAGAGGATATGGTGGACAATCAGATTCGTCATACT
GTCCATATTCACCGACCAGCGGTCGTCAATCTTTCTACCAATCCTCACAT
CTGCACCCACATTCAACTAGCGATTACCAGCCATGTGCAGTAGATGTTCA
TGGCTCTACACCTTTAAGTCCTGGTTGGAATACATATGGTCCGAACATAT
GAGACTAGTTTAAATAACTACATTTAAGTGATTCACCAAAGAATAGtgat
gtcagatctaacaagtTTCCCACAATCTAACAAGATCGAAGTGACACAAA
CTAAACCCTAATTGAAAATAAGACAGAGACATGTCTCTTTAAGAAATGGT
TAGTGGTTTCCGCATATTCAATTGTTGATAAAACAGTAGAAGAAGTAATT
GGTAGCGAACCAACGACAGGATAACTCTTAATTCCGAAATTCTGTATGCG
CGGCAAGGGAAAAAGGAAACTTAATTTATTCAGGTCATATTGGCTTTTAA
TTTAGTTTGAAACAAGATTTCTCATCTCGCCTATCAgttttctgttttca
aatttgaaatgtaaTAAATTGTAAAGAGCTGAAACTGCAGAAAATTTAGA
ACGatacaatttctttttttaaagatatttttttgaacttttagaaattt
ttcgtttttccaaTAATTCTAAGACAAACGAATATATTATTGTGTATAGC
Tg Run BLAST on NCBI transcript from alignment at sc0000002:17050..24246+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000393 ID=TCONS_00000393|Name=TCONS_00000393|organism=Clytia hemisphaerica|type=transcript|length=7197bp|location=Sequence derived from alignment at sc0000002:17050..24246+ (Clytia hemisphaerica)
CAGCGGGTGACTTTAATACAAAAATCTTTTAGCATCAACTTATACGTAGG
ggattcttaaaaaaaattcagagaCTGTCATTTTAAGCATTCGACTCGCT
CGGAACAAGACGGAATTAAATAATTTGAAGTATATCATAAACATTTCAAt
tgtttatttacatttttgatTATTAAAAAAAGGGGATTTTGAAGATTTAC
AATCATCATCATTTAGTATAAAACTCTTTTAATGATCAAGAAATTTGTTA
ATTGCATTTTATGATAATTATCATCAACAGCTAACGAGAATTCATCAGAC
ATTTTTGAAGTACTATTCAGACTGACTGGAGATTTGAATATCGGACAAAA
CTTTGAATTATAACCGGacagttgatttcgttttggaCAACGTTGACCTT
ACTTTCAGGTAAGTGGGACATTAATATTTTGAGAATTCAAAACTGATTTT
ATCGATGATGATTAATTTtgaactacagttgacgctctctaagtAGATTT
TCACGCGCGATAGGATTTTCAACTTCGTTAACTGCGTAATATCAGCTTTT
GGATGCTTACTggtagcgctagataatatttCTCTGGCGTCCATAGGTAA
CATGggtaaagcctgggatacacggggacggggttgttggattttcattg
aataagaGAGCATATCGAATAGTTGAGCATCGTTTATTAGAATTTTTTGT
TGACGGCAACTTCCATCATTATCGAATAATGAAGTGTATGGACAAGTTGA
ACGTCAACCCTGTTCTAGTCAGTAGCGATAAAGTGATAGAAACTAGACTA
AGAGGAAAAAGGTTAACTTTTATCTTGATCAGAATGGAAGGTCACCTTGT
ATGAGCGAGAATACGAAATTCCGTTTAACATATTACCAGGGATAAAGTGG
AACTCGGTCTAGTCACGGCTAGGATCAATTGGCGTATTGTTGTCTTGATT
CTGTTGTTTCTTTCTAATTGGGTAACAAGGAAATTACACAATTTCTAATT
GGTTAACGAGGAAAATAAACTCCTCTTCACGCAAAATTCAACACAGTGTT
CTGTCTTTTCGATTCAAATGCTTTGCACAATGACCATGAGATATTGGGTG
TATTATAACCACTGATCTTAATAAACTCTGGCTATAaccaccatctttga
tcggagttttttctTAAAGTGGTGAACCCGCAAAGAAGCCGTCGCAGTTT
TAAAAATTAATGTCAAGCGGCGCTACACTATCACAAGTATTAAAAGCAAT
GTAGACCTAGTACTCGAAAATGTTGAAACATCTTCTAGAAAGAGTGTGCC
TAATGTAGAATGAAACCTAAAAATTACNTGAAATATCTTCTAGAAAGAGT
AAAAAAGTGTGCCTAATGTAGAATGAAACCTAAGAATTACAAGATTAAGA
AGCAACCTACGTAAAATAGTTTCAACCAACTTCCgaagaaaatattaatt
ttttaatgCGTTGCACTGTAGTGTATATTACATAATTTTCTTGGTAGATA
CCCACAATTTTTCATGATCAGTAACCAACATTTGTTACAAAGAGAAAACT
TTAACTGTGAGGACGAGGGTGaagttttttgaccatttttgttcagagaa
acaaaacatttacaaaaatcaggagCCGATCCTactttaaaatctgaaaa
atctaaatcacACACCAAATAATTTTCGTTTTGTTTAAAttcacttttta
atgaaatatacaaacaaaatcgAATTATacatttaagaaaataaattcgT
GATcgttgatgatttttaaaagatttgaaattaaAGCGATTTTTTAACTG
GATTTTTAACTAGTTTtctgtttaaaattttgatagttAGGCTAAGTAGT
GATTCTAAACTTCTAAATCGGAATTACATGAATAAAATTCTGCTAATCTC
AAATGATGGGCAAATCATCTCTGTCTCTTTGTACCAAGAAATTTCAGGAG
TTTCGAAATCGATGGAAGTCTCTTAAGGTTAAATTAAGATGGCGTTcctc
aagaaattttttttgacagtttCCTTTCGCCTTTCCATCAGTAGAAAATT
AAtgactttatgaaatttgtctcTCTCGTGGGAAATTTTACCATCAGTTT
Tcaacgaaaaatgttttttcactcattttttttttttttgagtttcaaaa
tttttatggTTAAGTCATTACACCTAGCACACCAGGCGCCTTGAGAATGT
TCTAATTCATTTTCATTCTGTTCTTCAATCTTTGAAAGAGGAACATTGAA
GAAAAAGGACTGTTTAAAAAGTCAACCTAATTGATATATACCCCTCACAC
AAATATTAGTGGtctaaaaaagagagaaaacagcaaaaaaaaaagtaaag
catAATCAAAAATccgtcttcaaaaattttctcacaatGAAATTTTATAA
GCTTAGCTAAAGATTATCCGGCCACACAATTTTTATCATCGTCATAAAAA
TCATTCGAAAGCTAATTGATAATAAAATATTATTGTCTCCTACCCTTTTG
TTCAGAAAGAATTTTCCACGCGTTTCGTACATTATCACGACTCTCTCCTG
ATGGACTTTTTGAACCAACTGATCTCATTGGGTATCCAGAACAATAActt
caattttaaaacaaaaggttTTTATTGCTTCATATACAGTAACAGAAAAG
TTACCTAGAAACTCCAAGTAGAATCTAGCCTTTATTTAAttgtatttttc
tattgttctaaaatCAATCACGTGTGTAATCGTAAGCTaaaaagctaaat
tttattGACGATACAAAAATAAAGGGGACAAAGTCTGCATATTTTATGCA
ATGAGAAAAACATCTGGGGGTGTTGTAGAGAGTTGAGAGTGAAAAAAGGT
GCGTAACAagattttcgaagatttttttgaTTAATCCAAGATAGTAACGA
CTTAAACCGAtcagcgaaaaaaaaaaacgtttcacttcattataattttt
taaggttttgaaatAATTCATCGGACTAATATTATTGATGATCATTATAA
GCTTGGTATTTCTTTAAGtattttgttattcaaattcactacattttttt
tatattgtacaaacttcTTTTGGTTGGTAAAGGGAAAGGTCATCATTTTC
GAGCTTTGTTGAAACTCAGCAAAAAGGTTTTTGAGCCATcttataaaagt
ttttgaacCGTAATAACATCGGCGCGATACTTTGGTGGAACTTATAAGTG
AAATCGCTCACATTTTAGTGTGCTCGGAACTTACAATGTTAACTAGCTAT
GTAAGTATACAATGAAGTCTTGAATTGAAAAAAGGCTTGCCAAAGACAGG
GGCCAcggctccactttgaaagtATTAGGGCCACATAATATACTGACTAA
GGAGACGCCACTGGATGGGGCCGACGGGTGAAAAGCAATTTTTAGCTCTT
TTAGATTACCTAAAACAGACCTGTTTTAGGCGATCTGAAGGTTTAAGGTT
ATTAAACAGAATTTGACTTGAttggtaaattttctttttgttttgaaaaa
atgtgccTCCCCCCCGCTGGCGCAGCGCCTGTAAAGACTACTATTGGTTA
ATGTCAGAGGATGCTATCGTCTGTTAGAGGGACAGTTAACGCTGGGAAAA
CTTATAAGCGCGTAGTTTACTGTCGTAATGAGGGGTTACGGAAAGAATAG
TGGCGGAAAAGTTAGGAACAAACACTGCTAGCACAGTAAAAACCGTCATC
AATGTTCACCTTGTACCGGGCTTATCTTCGGCACTCAAATTAATCCCACT
TTCTAAATTATTTCCGTTTTAGTGATCTTGTCTAAGTTGATCTTTGCTTT
AGAATTTTAGACAGTAAAGTACAGTAAGAACGGGAGTACAATACAAACac
aatattcaatttcaaaatattatagtaaaagattttttcaagtgACTCTT
CGATACTGAATAAATTCAACTTACGCGACATTGAGAACGTTGGGTTACAA
AAAGATTAGGTTAATGGGTCAAGGAGAAACACTCTTCCTCCAAAGCGAAG
GTTTGAAAACAGACTTATCTTTTCCCAAGCTAATTAATTTACCTTTCAAC
ATTGCAACATGCATAGTGcggttttttttgtcaaataagGCCACATATCA
ACCTTAACTATCGAGACTTTATGAGAAAACTTTActtaaaataagagaaa
aactGACCCTCAAAATTAGGATTTTACTAATATCAAAATAGTATTAGTTC
GATAAGGGGAGCTTCAGGAAGCAGCAAGGTGGCGATACATGTAGAGTTCG
TTACTTTGCCAAAAAGAAATTACGAAACCCTGCTAATGTTAATTACTAGT
TTGTTAGCGTTTTTTGCAAGATGATATGTGATATCTTCAATTCAATTTTC
GGATGATCATGACAGAAGGCTGATAATCTGGTTAAAGCGTTACCTACTCA
CCATTAGCTCTGGATCATATACCACACATTAACTAAATCGAGATCTCAAA
TACTTTATTAATATTGACATTGTgtttaacttatttttaacaTCTTTATT
TCAGATCTCACACGAGCGCGAACGCAGGATGACGTGGCCCTATAATCCAG
TACCATCCTATCATGTACCACACCATGGACCATATAACTTCCCTGGACAT
TACCCCCTGAATTATTACGGTAAgacttttcaaactcgagatgtATAAAA
GTCAAAACCTCAAAACGGCGCTAATTTTTCGCTGCCAGACCCTGCTGAAA
ATATCTGAATTTTCACTTTTgaagaaaaaggtcaaattctGTTTTTCGAG
TAATTCTGGTAAACGAAGAATACCTTAAAAAGACTAGTAATATTTCCGTT
GGTTGAAATTGTCACAAATACCAAATACAGAACTAAGCGTTACGTACTTT
CATTGGTACAACAAAACGGAGGAAAGTTAAACTCggtaatattgaaaata
aaacgaAAAGTAACTAACTTACAGTCTCATGGTACAGTTTCCATTCTACT
TCACTCGACTGTCTTTTCCTAAaggaatacatgtttttttttataagcat
acaaaaatccgaaaacaggctcaaagatgcttaggtcgaaagcttaataa
tgctgaaaaatgcttgaggggatgcttaaatctaaagcataaatttaagg
aaatacaaaaaatccgtaaaattccagccaaaaaaagccaaaatcaggaa
aaacatttttcgtaggctcaagttatgcttgccatatgcttaatttttcc
ccatatctgagcctagatatgcttataagtacaatgcttataaaaaaaat
aatttAGATTTCTAGGtaataatatttaaaatattttgttaaatttcagg
ATATCCAAGAAAGCAAAGACGTGAGCGTACAACATTTACCAAAGGACAAT
TAGAAATATTGGAGAATTTATTCCGTGAGACGAAGTACCCTGATGTTTTT
ATGCGCGAAGACGTAGCAAGAAGAATCAGCCTACCTGAATCTAGAGTCCA
GGTTAGTTATTATGAAATCTCAACATCTTCTGATATTATGATAATCTTCA
TCGCACAACCTATAACACAAGtataataaagaaatattaaggAGCAATAT
GTGAGTGGTCTAAAGCAATTAGCTCATAGATAGCCGAAATCGCTGGCCCT
GTTAAAATAATGGAAACGCGGTCTATGGGTTGTAGACTACTGGGGTATCT
ATGTAAAATAAAGACTTTATGcagaaagtttttgtttgtttttgtttttg
taatgaaaaattaactctggcTGGCCGGCGAATTCATAGCAAACGCAGTG
TATTTATTAGcgtaaatatgtacttgaggcgAACCGAACTTTTCGAACGG
CTAATTGTAATTATTTTCGTACCTTGGACCGTCGAAATTCGCCGTTTGCC
GGGCCTAAATAAGACCCTTAAGCTTTATGTATCTAATACATTGCAAGTTT
TGGCTGATTCGAACACGATCGGGAACTtctttgttcgaattataggagAT
GAAAGCATTTAATAAGAGGCTCCACTTGACGAAATTTAGTCCAAATTATA
AAGAGATTAAAATAATAGAAATCGATAATCTCCGAttatttaacattttc
aaacttttttcatattccaGGTTTGGTTTAAAAACAGGCGTGCAAAACAC
CGACAGAAATCCAAGAAATCATCATCTACATCACAAAGTACGAACTCAGA
TTCCAGTCCTGAACGAGGAGACCGTTCGCCTGCCCTCCAATCTCCTAACT
CTGATAAATCACACAACATTGACCCACCACCACTTTCGTCACCGGCAAAA
CCGAACCATAGCAACAGCAACCATAGCAACAGCAACCATAGCAGCAGtaa
taacaacaataataatgGCAGTAATGGAAACACAACATCAGAATCAACAA
ACGAGTTTAATAACAACAAATCCCAATGCACATTCAATAACAACCATTTA
CCTCAAAATCCATTAACACCAACCACGCCTACAAACACGGGCGGATATCC
GCCACTCGAAAGAGCACCCTCGTATCCTAACTACATCCCTCAATCTTTCC
AGCAATCGCAAAGAGGATATGGTGGACAATCAGATTCGTCATACTGTCCA
TATTCACCGACCAGCGGTCGTCAATCTTTCTACCAATCCTCACATCTGCA
CCCACATTCAACTAGCGATTACCAGCCATGTGCAGTAGATGTTCATGGCT
CTACACCTTTAAGTCCTGGTTGGAATACATATGGTCCGAACATATGAGAC
TAGTTTAAATAACTACATTTAAGTGATTCACCAAAGAATAGtgatgtcag
atctaacaagtTTCCCACAATCTAACAAGATCGAAGTGACACAAACTAAA
CCCTAATTGAAAATAAGACAGAGACATGTCTCTTTAAGAAATGGTTAGTG
GTTTCCGCATATTCAATTGTTGATAAAACAGTAGAAGAAGTAATTGGTAG
CGAACCAACGACAGGATAACTCTTAATTCCGAAATTCTGTATGCGCGGCA
AGGGAAAAAGGAAACTTAATTTATTCAGGTCATATTGGCTTTTAATTTAG
TTTGAAACAAGATTTCTCATCTCGCCTATCAgttttctgttttcaaattt
gaaatgtaaTAAATTGTAAAGAGCTGAAACTGCAGAAAATTTAGAACGat
acaatttctttttttaaagatatttttttgaacttttagaaatttttcgt
ttttccaaTAATTCTAAGACAAACGAATATATTATTGTGTATAGCTg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000393-exon-sc0000002-1491911889:17050..17457 | TCONS_00000393-exon-sc0000002-1491911889:17050..17457 | Clytia hemisphaerica | exon |
| TCONS_00000393-exon-sc0000002-1510915933:17050..17457 | TCONS_00000393-exon-sc0000002-1510915933:17050..17457 | Clytia hemisphaerica | exon |
| TCONS_00000393-exon-sc0000002-1575043694:17050..17457 | TCONS_00000393-exon-sc0000002-1575043694:17050..17457 | Clytia hemisphaerica | exon |
| TCONS_00000393-exon-sc0000002-1491911889:21554..21668 | TCONS_00000393-exon-sc0000002-1491911889:21554..21668 | Clytia hemisphaerica | exon |
| TCONS_00000393-exon-sc0000002-1510915933:21554..21668 | TCONS_00000393-exon-sc0000002-1510915933:21554..21668 | Clytia hemisphaerica | exon |
| TCONS_00000393-exon-sc0000002-1575043694:21554..21668 | TCONS_00000393-exon-sc0000002-1575043694:21554..21668 | Clytia hemisphaerica | exon |
| TCONS_00000393-exon-sc0000002-1491911889:22349..22500 | TCONS_00000393-exon-sc0000002-1491911889:22349..22500 | Clytia hemisphaerica | exon |
| TCONS_00000393-exon-sc0000002-1510915933:22349..22500 | TCONS_00000393-exon-sc0000002-1510915933:22349..22500 | Clytia hemisphaerica | exon |
| TCONS_00000393-exon-sc0000002-1575043694:22349..22500 | TCONS_00000393-exon-sc0000002-1575043694:22349..22500 | Clytia hemisphaerica | exon |
| TCONS_00000393-exon-sc0000002-1491911889:23120..24246 | TCONS_00000393-exon-sc0000002-1491911889:23120..24246 | Clytia hemisphaerica | exon |
| TCONS_00000393-exon-sc0000002-1510915933:23120..24246 | TCONS_00000393-exon-sc0000002-1510915933:23120..24246 | Clytia hemisphaerica | exon |
| TCONS_00000393-exon-sc0000002-1575043694:23120..24246 | TCONS_00000393-exon-sc0000002-1575043694:23120..24246 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:17050..24246 + |
Blast
BLAST of TCONS_00000393 vs. Swiss-Prot (Human)
Match: OTX2 (Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 7.239e-26 Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1
Query: 502 HYPLNYYGYPRKQRRERTTFTKGQLEILENLFRETKYPDVFMREDVARRISLPESRVQVWFKNRRAKHR 708
H + Y PRKQRRERTTFT+ QL++LE LF +T+YPD+FMRE+VA +I+LPESRVQVWFKNRRAK R
Sbjct: 26 HPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 94
The following BLAST results are available for this feature:
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