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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000389 ID=TCONS_00000389|Name=TCONS_00000389|organism=Clytia hemisphaerica|type=transcript|length=2157bp
CTTATGCAAGGATGAGCATCAAATTCACAAATGTCCAAAATATGTATCAC
TGGATCAACCAGAACGCTTTGAAATGGCAAAGAAGTTGAATCTTTGCTAC
AATTGTTTGAAGAAGGATCACTTTACTTCAAAATGCAAATCAAAGAACAA
TTGTTTCAACGCTGACTGCGATGAACGTCACCATACCACGCTACATGAAT
ACTTCATTGAACATGTAAAAGAATCGTTCTCAGGAAACACTCAAGTTGTT
GAACCATCTGGTACAGTGTATCTATCTGTCGTTCCAGTAAAGCTTCAAGG
ACTGGATTCTTCGTCTATCACTACCTACGCACTTTTGGACACAGGTAGTC
AAAGTACTTTGGTCAGAGATGACGTTGCcaagaaactcaaactgaagaAA
AAGGACAAGAAGATCACCAtaacaacaatcaatgacattGGAGCAAAAAC
TAAAGTCAAAGAAACGTCAATGCGTGTCGAAAACAGAGACGATGGAATTG
GTGTCAACATCGACAACTGCTATATTGTGCCAAAATCAAGCTTTCACATG
CCAAAGCAGCAATATCCTTCAACaatgatgaaaaagatgaaGGAGGAGAA
AGGCATAAAACTACACAACGCTCTTTATGAAGAAATTGGAATTCTCATAG
GAGCAAACGTTCCATCCGTCCACATACCCTTGGAAGTCAAGGAAGGAGAA
AATTCTGAACCACTTGCTATCAAAACAATCTTTGGATGGACCCTCTTCGG
TGCGAGTGGACAACCAGAGACGGTATCAATGAACAGAATTGTTATCAAAC
CAGAAGCTGATCTCCATCACTGTGTACAAAGAATATGGGATCAAGACTTT
ATTACAAACCCATCAGACCGTGACGAAGCCCTATCCATAGAGGATAAACG
GTGTCATGAAAAGCTGGAATCGGAAACTGTTCTCGCTGATGGAAAGTATC
AAGTACCAATGCTTTGGAAGAAAGATGCAACATTTCCAAACAACCGTACT
GTAGCCGAGAAAAGATTCCACCAACTTCAAAACAAGCTGAGAAGAGAACC
AAACCTTCGAAAGCTTTACGACCAAAGTATGACcaaatatcttgagattg
gttATGCAAGAAAGATGACGTCAGAAGAGGCGACTACCGAACACCCAAGA
ACTTGGTATCTGCCGCATTATGGCGTCTTCAACCCAAACAAACCAGGCAA
AATTCGTCTTGTGCTTGATGCAGCTGCAAAGTTTCAAGGAACAAGCTTAA
ACGATGCTCTATACACTGGACCAGACCTGATTAACAATATGCTTGGAGTA
CTGATGAGATTCAGAACACACCACTTTGCATTTTCCGCAGACATTGAAGG
AATGTTCAATCAAGTGAAAGTCATCCAAGAGGACACACAATCATTGAGGT
TCCTTTAGAAAGAAGATATTGACTCACCTGATCAACCAGACACCTACCAA
ATGTTGGTTCAAATCATGGGTGCAACATGCTCACCAACGTGTGCCAATTA
TGCTCTAAAAAGATGTGCAAGGGATCACTTAGAAGACTTCGACCCAAGCA
CCATTGAAACAATCTTACGATCGTTCTATGTGGATGACCTATTAAAATCT
ACAGAAAGCATCGAAACTGGTCAACAACTTATCAAAGAAGTTATCGACAT
CACAAAGCTGGGCGGAAATCGCTTAACCAAATTCGTTAGCAACGACCATG
AACTACTCAAGAATGTACCAGAAGAATTGATATCACCTTCAGTAAACATT
CAGATGGAAGATGGACAAAATCATTCTACTAAAGCACTTGGCATCACTTG
GAATACCAAAGAAGATGTGCTAACATTCCTGCCAAATATTGTGAGCGCTT
CTTCAACCAAGAGGGGAATCCTTAGCGTTGTTAGCTCACTGTATGACCCA
CTGGGGTTTCTTTCACCTTTGACCACTACTGCAAAGATGATACTACAAGA
TGTATGGAAAGATGGCACAAATTGGGATGAACCAGTCAACAACGAAATTC
AAAGAAAGTGGAACAGATGGCAGTCTGGTATATCCACTATCGACATGTTC
AAGTTGGAGAGATGCTACAACATTCCGATATCATCCAAGATTCAACTACA
TATCTTTGGCGATGCATCAGAAAACGCCTATGGTGCAGTTGCTTATCTCA
GAACAAC Run BLAST on NCBI protein sequence of TCONS_00000389-protein >TCONS_00000389-protein ID=TCONS_00000389-protein|Name=TCONS_00000389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
LCKDEHQIHKCPKYVSLDQPERFEMAKKLNLCYNCLKKDHFTSKCKSKNN
CFNADCDERHHTTLHEYFIEHVKESFSGNTQVVEPSGTVYLSVVPVKLQG
LDSSSITTYALLDTGSQSTLVRDDVAKKLKLKKKDKKITITTINDIGAKT
KVKETSMRVENRDDGIGVNIDNCYIVPKSSFHMPKQQYPSTMMKKMKEEK
GIKLHNALYEEIGILIGANVPSVHIPLEVKEGENSEPLAIKTIFGWTLFG
ASGQPETVSMNRIVIKPEADLHHCVQRIWDQDFITNPSDRDEALSIEDKR
CHEKLESETVLADGKYQVPMLWKKDATFPNNRTVAEKRFHQLQNKLRREP
NLRKLYDQSMTKYLEIGYARKMTSEEATTEHPRTWYLPHYGVFNPNKPGK
IRLVLDAAAKFQGTSLNDALYTGPDLINNMLGVLMRFRTHHFAFSADIEG
MFNQVKVIQEDTQSLRFL Run BLAST on NCBI transcript from alignment at sc0000001:2853904..2856060 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000389 ID=TCONS_00000389|Name=TCONS_00000389|organism=Clytia hemisphaerica|type=transcript|length=2157bp|location=Sequence derived from alignment at sc0000001:2853904..2856060 (Clytia hemisphaerica)
GTTGTTCTGAGATAAGCAACTGCACCATAGGCGTTTTCTGATGCATCGCC
AAAGATATGTAGTTGAATCTTGGATGATATCGGAATGTTGTAGCATCTCT
CCAACTTGAACATGTCGATAGTGGATATACCAGACTGCCATCTGTTCCAC
TTTCTTTGAATTTCGTTGTTGACTGGTTCATCCCAATTTGTGCCATCTTT
CCATACATCTTGTAGTATCATCTTTGCAGTAGTGGTCAAAGGTGAAAGAA
ACCCCAGTGGGTCATACAGTGAGCTAACAACGCTAAGGATTCCCCTCTTG
GTTGAAGAAGCGCTCACAATATTTGGCAGGAATGTTAGCACATCTTCTTT
GGTATTCCAAGTGATGCCAAGTGCTTTAGTAGAATGATTTTGTCCATCTT
CCATCTGAATGTTTACTGAAGGTGATATCAATTCTTCTGGTACATTCTTG
AGTAGTTCATGGTCGTTGCTAACGAATTTGGTTAAGCGATTTCCGCCCAG
CTTTGTGATGTCGATAACTTCTTTGATAAGTTGTTGACCAGTTTCGATGC
TTTCTGTAGATTTTAATAGGTCATCCACATAGAACGATCGTAAGATTGTT
TCAATGGTGCTTGGGTCGAAGTCTTCTAAGTGATCCCTTGCACATCTTTT
TAGAGCATAATTGGCACACGTTGGTGAGCATGTTGCACCCATGATTTGAA
CCAACATTTGGTAGGTGTCTGGTTGATCAGGTGAGTCAATATCTTCTTTC
TAAAGGAACCTCAATGATTGTGTGTCCTCTTGGATGACTTTCACTTGATT
GAACATTCCTTCAATGTCTGCGGAAAATGCAAAGTGGTGTGTTCTGAATC
TCATCAGTACTCCAAGCATATTGTTAATCAGGTCTGGTCCAGTGTATAGA
GCATCGTTTAAGCTTGTTCCTTGAAACTTTGCAGCTGCATCAAGCACAAG
ACGAATTTTGCCTGGTTTGTTTGGGTTGAAGACGCCATAATGCGGCAGAT
ACCAAGTTCTTGGGTGTTCGGTAGTCGCCTCTTCTGACGTCATCTTTCTT
GCATaaccaatctcaagatatttgGTCATACTTTGGTCGTAAAGCTTTCG
AAGGTTTGGTTCTCTTCTCAGCTTGTTTTGAAGTTGGTGGAATCTTTTCT
CGGCTACAGTACGGTTGTTTGGAAATGTTGCATCTTTCTTCCAAAGCATT
GGTACTTGATACTTTCCATCAGCGAGAACAGTTTCCGATTCCAGCTTTTC
ATGACACCGTTTATCCTCTATGGATAGGGCTTCGTCACGGTCTGATGGGT
TTGTAATAAAGTCTTGATCCCATATTCTTTGTACACAGTGATGGAGATCA
GCTTCTGGTTTGATAACAATTCTGTTCATTGATACCGTCTCTGGTTGTCC
ACTCGCACCGAAGAGGGTCCATCCAAAGATTGTTTTGATAGCAAGTGGTT
CAGAATTTTCTCCTTCCTTGACTTCCAAGGGTATGTGGACGGATGGAACG
TTTGCTCCTATGAGAATTCCAATTTCTTCATAAAGAGCGTTGTGTAGTTT
TATGCCTTTCTCCTCCttcatctttttcatcattGTTGAAGGATATTGCT
GCTTTGGCATGTGAAAGCTTGATTTTGGCACAATATAGCAGTTGTCGATG
TTGACACCAATTCCATCGTCTCTGTTTTCGACACGCATTGACGTTTCTTT
GACTTTAGTTTTTGCTCCaatgtcattgattgttgttaTGGTGATCTTCT
TGTCCTTTTtcttcagtttgagtttcttgGCAACGTCATCTCTGACCAAA
GTACTTTGACTACCTGTGTCCAAAAGTGCGTAGGTAGTGATAGACGAAGA
ATCCAGTCCTTGAAGCTTTACTGGAACGACAGATAGATACACTGTACCAG
ATGGTTCAACAACTTGAGTGTTTCCTGAGAACGATTCTTTTACATGTTCA
ATGAAGTATTCATGTAGCGTGGTATGGTGACGTTCATCGCAGTCAGCGTT
GAAACAATTGTTCTTTGATTTGCATTTTGAAGTAAAGTGATCCTTCTTCA
AACAATTGTAGCAAAGATTCAACTTCTTTGCCATTTCAAAGCGTTCTGGT
TGATCCAGTGATACATATTTTGGACATTTGTGAATTTGATGCTCATCCTT
GCATAAG Coding sequence (CDS) from alignment at sc0000001:2853904..2856060 >TCONS_00000389 ID=TCONS_00000389|Name=TCONS_00000389|organism=Clytia hemisphaerica|type=CDS|length=1407bp|location=Sequence derived from alignment at sc0000001:2853904..2856060 (Clytia hemisphaerica)
CTAAAGGAACCTCAATGATTGTGTGTCCTCTTGGATGACTTTCACTTGAT
TGAACATTCCTTCAATGTCTGCGGAAAATGCAAAGTGGTGTGTTCTGAAT
CTCATCAGTACTCCAAGCATATTGTTAATCAGGTCTGGTCCAGTGTATAG
AGCATCGTTTAAGCTTGTTCCTTGAAACTTTGCAGCTGCATCAAGCACAA
GACGAATTTTGCCTGGTTTGTTTGGGTTGAAGACGCCATAATGCGGCAGA
TACCAAGTTCTTGGGTGTTCGGTAGTCGCCTCTTCTGACGTCATCTTTCT
TGCATaaccaatctcaagatatttgGTCATACTTTGGTCGTAAAGCTTTC
GAAGGTTTGGTTCTCTTCTCAGCTTGTTTTGAAGTTGGTGGAATCTTTTC
TCGGCTACAGTACGGTTGTTTGGAAATGTTGCATCTTTCTTCCAAAGCAT
TGGTACTTGATACTTTCCATCAGCGAGAACAGTTTCCGATTCCAGCTTTT
CATGACACCGTTTATCCTCTATGGATAGGGCTTCGTCACGGTCTGATGGG
TTTGTAATAAAGTCTTGATCCCATATTCTTTGTACACAGTGATGGAGATC
AGCTTCTGGTTTGATAACAATTCTGTTCATTGATACCGTCTCTGGTTGTC
CACTCGCACCGAAGAGGGTCCATCCAAAGATTGTTTTGATAGCAAGTGGT
TCAGAATTTTCTCCTTCCTTGACTTCCAAGGGTATGTGGACGGATGGAAC
GTTTGCTCCTATGAGAATTCCAATTTCTTCATAAAGAGCGTTGTGTAGTT
TTATGCCTTTCTCCTCCttcatctttttcatcattGTTGAAGGATATTGC
TGCTTTGGCATGTGAAAGCTTGATTTTGGCACAATATAGCAGTTGTCGAT
GTTGACACCAATTCCATCGTCTCTGTTTTCGACACGCATTGACGTTTCTT
TGACTTTAGTTTTTGCTCCaatgtcattgattgttgttaTGGTGATCTTC
TTGTCCTTTTtcttcagtttgagtttcttgGCAACGTCATCTCTGACCAA
AGTACTTTGACTACCTGTGTCCAAAAGTGCGTAGGTAGTGATAGACGAAG
AATCCAGTCCTTGAAGCTTTACTGGAACGACAGATAGATACACTGTACCA
GATGGTTCAACAACTTGAGTGTTTCCTGAGAACGATTCTTTTACATGTTC
AATGAAGTATTCATGTAGCGTGGTATGGTGACGTTCATCGCAGTCAGCGT
TGAAACAATTGTTCTTTGATTTGCATTTTGAAGTAAAGTGATCCTTCTTC
AAACAATTGTAGCAAAGATTCAACTTCTTTGCCATTTCAAAGCGTTCTGG
TTGATCCAGTGATACATATTTTGGACATTTGTGAATTTGATGCTCATCCT
TGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000389-exon-sc0000001-1491911889:2853904..2856060 | TCONS_00000389-exon-sc0000001-1491911889:2853904..2856060 | Clytia hemisphaerica | exon |
| TCONS_00000389-exon-sc0000001-1510915933:2853904..2856060 | TCONS_00000389-exon-sc0000001-1510915933:2853904..2856060 | Clytia hemisphaerica | exon |
| TCONS_00000389-exon-sc0000001-1575043694:2853904..2856060 | TCONS_00000389-exon-sc0000001-1575043694:2853904..2856060 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2853904..2856060 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
| IPR001969 | Aspartic_peptidase_AS |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
Blast
The following BLAST results are available for this feature:
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