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TCONS_00000389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000389
Unique NameTCONS_00000389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2157

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000389 ID=TCONS_00000389|Name=TCONS_00000389|organism=Clytia hemisphaerica|type=transcript|length=2157bp
CTTATGCAAGGATGAGCATCAAATTCACAAATGTCCAAAATATGTATCAC
TGGATCAACCAGAACGCTTTGAAATGGCAAAGAAGTTGAATCTTTGCTAC
AATTGTTTGAAGAAGGATCACTTTACTTCAAAATGCAAATCAAAGAACAA
TTGTTTCAACGCTGACTGCGATGAACGTCACCATACCACGCTACATGAAT
ACTTCATTGAACATGTAAAAGAATCGTTCTCAGGAAACACTCAAGTTGTT
GAACCATCTGGTACAGTGTATCTATCTGTCGTTCCAGTAAAGCTTCAAGG
ACTGGATTCTTCGTCTATCACTACCTACGCACTTTTGGACACAGGTAGTC
AAAGTACTTTGGTCAGAGATGACGTTGCcaagaaactcaaactgaagaAA
AAGGACAAGAAGATCACCAtaacaacaatcaatgacattGGAGCAAAAAC
TAAAGTCAAAGAAACGTCAATGCGTGTCGAAAACAGAGACGATGGAATTG
GTGTCAACATCGACAACTGCTATATTGTGCCAAAATCAAGCTTTCACATG
CCAAAGCAGCAATATCCTTCAACaatgatgaaaaagatgaaGGAGGAGAA
AGGCATAAAACTACACAACGCTCTTTATGAAGAAATTGGAATTCTCATAG
GAGCAAACGTTCCATCCGTCCACATACCCTTGGAAGTCAAGGAAGGAGAA
AATTCTGAACCACTTGCTATCAAAACAATCTTTGGATGGACCCTCTTCGG
TGCGAGTGGACAACCAGAGACGGTATCAATGAACAGAATTGTTATCAAAC
CAGAAGCTGATCTCCATCACTGTGTACAAAGAATATGGGATCAAGACTTT
ATTACAAACCCATCAGACCGTGACGAAGCCCTATCCATAGAGGATAAACG
GTGTCATGAAAAGCTGGAATCGGAAACTGTTCTCGCTGATGGAAAGTATC
AAGTACCAATGCTTTGGAAGAAAGATGCAACATTTCCAAACAACCGTACT
GTAGCCGAGAAAAGATTCCACCAACTTCAAAACAAGCTGAGAAGAGAACC
AAACCTTCGAAAGCTTTACGACCAAAGTATGACcaaatatcttgagattg
gttATGCAAGAAAGATGACGTCAGAAGAGGCGACTACCGAACACCCAAGA
ACTTGGTATCTGCCGCATTATGGCGTCTTCAACCCAAACAAACCAGGCAA
AATTCGTCTTGTGCTTGATGCAGCTGCAAAGTTTCAAGGAACAAGCTTAA
ACGATGCTCTATACACTGGACCAGACCTGATTAACAATATGCTTGGAGTA
CTGATGAGATTCAGAACACACCACTTTGCATTTTCCGCAGACATTGAAGG
AATGTTCAATCAAGTGAAAGTCATCCAAGAGGACACACAATCATTGAGGT
TCCTTTAGAAAGAAGATATTGACTCACCTGATCAACCAGACACCTACCAA
ATGTTGGTTCAAATCATGGGTGCAACATGCTCACCAACGTGTGCCAATTA
TGCTCTAAAAAGATGTGCAAGGGATCACTTAGAAGACTTCGACCCAAGCA
CCATTGAAACAATCTTACGATCGTTCTATGTGGATGACCTATTAAAATCT
ACAGAAAGCATCGAAACTGGTCAACAACTTATCAAAGAAGTTATCGACAT
CACAAAGCTGGGCGGAAATCGCTTAACCAAATTCGTTAGCAACGACCATG
AACTACTCAAGAATGTACCAGAAGAATTGATATCACCTTCAGTAAACATT
CAGATGGAAGATGGACAAAATCATTCTACTAAAGCACTTGGCATCACTTG
GAATACCAAAGAAGATGTGCTAACATTCCTGCCAAATATTGTGAGCGCTT
CTTCAACCAAGAGGGGAATCCTTAGCGTTGTTAGCTCACTGTATGACCCA
CTGGGGTTTCTTTCACCTTTGACCACTACTGCAAAGATGATACTACAAGA
TGTATGGAAAGATGGCACAAATTGGGATGAACCAGTCAACAACGAAATTC
AAAGAAAGTGGAACAGATGGCAGTCTGGTATATCCACTATCGACATGTTC
AAGTTGGAGAGATGCTACAACATTCCGATATCATCCAAGATTCAACTACA
TATCTTTGGCGATGCATCAGAAAACGCCTATGGTGCAGTTGCTTATCTCA
GAACAAC
Run BLAST on NCBI

protein sequence of TCONS_00000389-protein

>TCONS_00000389-protein ID=TCONS_00000389-protein|Name=TCONS_00000389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
LCKDEHQIHKCPKYVSLDQPERFEMAKKLNLCYNCLKKDHFTSKCKSKNN
CFNADCDERHHTTLHEYFIEHVKESFSGNTQVVEPSGTVYLSVVPVKLQG
LDSSSITTYALLDTGSQSTLVRDDVAKKLKLKKKDKKITITTINDIGAKT
KVKETSMRVENRDDGIGVNIDNCYIVPKSSFHMPKQQYPSTMMKKMKEEK
GIKLHNALYEEIGILIGANVPSVHIPLEVKEGENSEPLAIKTIFGWTLFG
ASGQPETVSMNRIVIKPEADLHHCVQRIWDQDFITNPSDRDEALSIEDKR
CHEKLESETVLADGKYQVPMLWKKDATFPNNRTVAEKRFHQLQNKLRREP
NLRKLYDQSMTKYLEIGYARKMTSEEATTEHPRTWYLPHYGVFNPNKPGK
IRLVLDAAAKFQGTSLNDALYTGPDLINNMLGVLMRFRTHHFAFSADIEG
MFNQVKVIQEDTQSLRFL
Run BLAST on NCBI

transcript from alignment at sc0000001:2853904..2856060

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000389 ID=TCONS_00000389|Name=TCONS_00000389|organism=Clytia hemisphaerica|type=transcript|length=2157bp|location=Sequence derived from alignment at sc0000001:2853904..2856060 (Clytia hemisphaerica)
GTTGTTCTGAGATAAGCAACTGCACCATAGGCGTTTTCTGATGCATCGCC AAAGATATGTAGTTGAATCTTGGATGATATCGGAATGTTGTAGCATCTCT CCAACTTGAACATGTCGATAGTGGATATACCAGACTGCCATCTGTTCCAC TTTCTTTGAATTTCGTTGTTGACTGGTTCATCCCAATTTGTGCCATCTTT CCATACATCTTGTAGTATCATCTTTGCAGTAGTGGTCAAAGGTGAAAGAA ACCCCAGTGGGTCATACAGTGAGCTAACAACGCTAAGGATTCCCCTCTTG GTTGAAGAAGCGCTCACAATATTTGGCAGGAATGTTAGCACATCTTCTTT GGTATTCCAAGTGATGCCAAGTGCTTTAGTAGAATGATTTTGTCCATCTT CCATCTGAATGTTTACTGAAGGTGATATCAATTCTTCTGGTACATTCTTG AGTAGTTCATGGTCGTTGCTAACGAATTTGGTTAAGCGATTTCCGCCCAG CTTTGTGATGTCGATAACTTCTTTGATAAGTTGTTGACCAGTTTCGATGC TTTCTGTAGATTTTAATAGGTCATCCACATAGAACGATCGTAAGATTGTT TCAATGGTGCTTGGGTCGAAGTCTTCTAAGTGATCCCTTGCACATCTTTT TAGAGCATAATTGGCACACGTTGGTGAGCATGTTGCACCCATGATTTGAA CCAACATTTGGTAGGTGTCTGGTTGATCAGGTGAGTCAATATCTTCTTTC TAAAGGAACCTCAATGATTGTGTGTCCTCTTGGATGACTTTCACTTGATT GAACATTCCTTCAATGTCTGCGGAAAATGCAAAGTGGTGTGTTCTGAATC TCATCAGTACTCCAAGCATATTGTTAATCAGGTCTGGTCCAGTGTATAGA GCATCGTTTAAGCTTGTTCCTTGAAACTTTGCAGCTGCATCAAGCACAAG ACGAATTTTGCCTGGTTTGTTTGGGTTGAAGACGCCATAATGCGGCAGAT ACCAAGTTCTTGGGTGTTCGGTAGTCGCCTCTTCTGACGTCATCTTTCTT GCATaaccaatctcaagatatttgGTCATACTTTGGTCGTAAAGCTTTCG AAGGTTTGGTTCTCTTCTCAGCTTGTTTTGAAGTTGGTGGAATCTTTTCT CGGCTACAGTACGGTTGTTTGGAAATGTTGCATCTTTCTTCCAAAGCATT GGTACTTGATACTTTCCATCAGCGAGAACAGTTTCCGATTCCAGCTTTTC ATGACACCGTTTATCCTCTATGGATAGGGCTTCGTCACGGTCTGATGGGT TTGTAATAAAGTCTTGATCCCATATTCTTTGTACACAGTGATGGAGATCA GCTTCTGGTTTGATAACAATTCTGTTCATTGATACCGTCTCTGGTTGTCC ACTCGCACCGAAGAGGGTCCATCCAAAGATTGTTTTGATAGCAAGTGGTT CAGAATTTTCTCCTTCCTTGACTTCCAAGGGTATGTGGACGGATGGAACG TTTGCTCCTATGAGAATTCCAATTTCTTCATAAAGAGCGTTGTGTAGTTT TATGCCTTTCTCCTCCttcatctttttcatcattGTTGAAGGATATTGCT GCTTTGGCATGTGAAAGCTTGATTTTGGCACAATATAGCAGTTGTCGATG TTGACACCAATTCCATCGTCTCTGTTTTCGACACGCATTGACGTTTCTTT GACTTTAGTTTTTGCTCCaatgtcattgattgttgttaTGGTGATCTTCT TGTCCTTTTtcttcagtttgagtttcttgGCAACGTCATCTCTGACCAAA GTACTTTGACTACCTGTGTCCAAAAGTGCGTAGGTAGTGATAGACGAAGA ATCCAGTCCTTGAAGCTTTACTGGAACGACAGATAGATACACTGTACCAG ATGGTTCAACAACTTGAGTGTTTCCTGAGAACGATTCTTTTACATGTTCA ATGAAGTATTCATGTAGCGTGGTATGGTGACGTTCATCGCAGTCAGCGTT GAAACAATTGTTCTTTGATTTGCATTTTGAAGTAAAGTGATCCTTCTTCA AACAATTGTAGCAAAGATTCAACTTCTTTGCCATTTCAAAGCGTTCTGGT TGATCCAGTGATACATATTTTGGACATTTGTGAATTTGATGCTCATCCTT GCATAAG

Coding sequence (CDS) from alignment at sc0000001:2853904..2856060

>TCONS_00000389 ID=TCONS_00000389|Name=TCONS_00000389|organism=Clytia hemisphaerica|type=CDS|length=1407bp|location=Sequence derived from alignment at sc0000001:2853904..2856060 (Clytia hemisphaerica)
CTAAAGGAACCTCAATGATTGTGTGTCCTCTTGGATGACTTTCACTTGAT
TGAACATTCCTTCAATGTCTGCGGAAAATGCAAAGTGGTGTGTTCTGAAT
CTCATCAGTACTCCAAGCATATTGTTAATCAGGTCTGGTCCAGTGTATAG
AGCATCGTTTAAGCTTGTTCCTTGAAACTTTGCAGCTGCATCAAGCACAA
GACGAATTTTGCCTGGTTTGTTTGGGTTGAAGACGCCATAATGCGGCAGA
TACCAAGTTCTTGGGTGTTCGGTAGTCGCCTCTTCTGACGTCATCTTTCT
TGCATaaccaatctcaagatatttgGTCATACTTTGGTCGTAAAGCTTTC
GAAGGTTTGGTTCTCTTCTCAGCTTGTTTTGAAGTTGGTGGAATCTTTTC
TCGGCTACAGTACGGTTGTTTGGAAATGTTGCATCTTTCTTCCAAAGCAT
TGGTACTTGATACTTTCCATCAGCGAGAACAGTTTCCGATTCCAGCTTTT
CATGACACCGTTTATCCTCTATGGATAGGGCTTCGTCACGGTCTGATGGG
TTTGTAATAAAGTCTTGATCCCATATTCTTTGTACACAGTGATGGAGATC
AGCTTCTGGTTTGATAACAATTCTGTTCATTGATACCGTCTCTGGTTGTC
CACTCGCACCGAAGAGGGTCCATCCAAAGATTGTTTTGATAGCAAGTGGT
TCAGAATTTTCTCCTTCCTTGACTTCCAAGGGTATGTGGACGGATGGAAC
GTTTGCTCCTATGAGAATTCCAATTTCTTCATAAAGAGCGTTGTGTAGTT
TTATGCCTTTCTCCTCCttcatctttttcatcattGTTGAAGGATATTGC
TGCTTTGGCATGTGAAAGCTTGATTTTGGCACAATATAGCAGTTGTCGAT
GTTGACACCAATTCCATCGTCTCTGTTTTCGACACGCATTGACGTTTCTT
TGACTTTAGTTTTTGCTCCaatgtcattgattgttgttaTGGTGATCTTC
TTGTCCTTTTtcttcagtttgagtttcttgGCAACGTCATCTCTGACCAA
AGTACTTTGACTACCTGTGTCCAAAAGTGCGTAGGTAGTGATAGACGAAG
AATCCAGTCCTTGAAGCTTTACTGGAACGACAGATAGATACACTGTACCA
GATGGTTCAACAACTTGAGTGTTTCCTGAGAACGATTCTTTTACATGTTC
AATGAAGTATTCATGTAGCGTGGTATGGTGACGTTCATCGCAGTCAGCGT
TGAAACAATTGTTCTTTGATTTGCATTTTGAAGTAAAGTGATCCTTCTTC
AAACAATTGTAGCAAAGATTCAACTTCTTTGCCATTTCAAAGCGTTCTGG
TTGATCCAGTGATACATATTTTGGACATTTGTGAATTTGATGCTCATCCT
TGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000263XLOC_000263Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000389-proteinTCONS_00000389-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000389-exon-sc0000001-1491911889:2853904..2856060TCONS_00000389-exon-sc0000001-1491911889:2853904..2856060Clytia hemisphaericaexon
TCONS_00000389-exon-sc0000001-1510915933:2853904..2856060TCONS_00000389-exon-sc0000001-1510915933:2853904..2856060Clytia hemisphaericaexon
TCONS_00000389-exon-sc0000001-1575043694:2853904..2856060TCONS_00000389-exon-sc0000001-1575043694:2853904..2856060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2853904..2856060 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.413754 0.301663 0.317155 0.173431 0.381275 0.221019 0.257564 0.648782 0.323041 0.892895 0.46326 0.523363 0.686699 0.62276 0.22097 0.117195 0.0546879 0.116498 0.348633 0.609668 0.408114 0.756987 0.873616 0.886607 1.85033 1.20344 0.412289 0.713924 1.28471 1.08936
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
IPR001969Aspartic_peptidase_AS
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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