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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000376 ID=TCONS_00000376|Name=TCONS_00000376|organism=Clytia hemisphaerica|type=transcript|length=2536bp
aaaaatcaaaaaagtagcGAAGAGAGCGTATAAAACTCAAAGACGAAGAC
ATATTATTGTGATATTATTCTCTTCTAAACTTCTATTCTTAAAGGATAAG
TATTGTCAATAAAATGGCAGTTCTCGGAgacgggagtttctaaacatcga
ctagaaatggcgaccacgaccagcgaccacgaccgccgaccagataaatt
tggattatcaagtttatctgctctctccaccgtagagaatgaTTAAATCG
agtcctcagaatactaaaaagtggcctttgaagtaaccagtcattttctt
gacaaagtgacactatttgacaaaaatattgacagggtcattaaAAGTAT
GATGTTTAAGTAAGCTTTGTTAAactaaatattttaattatgctgaataa
gatgcctttagtatgaatagatagaacttgtcagtaggaaaaaattggga
aggccagttttagagatatggatctaatcaattattctattgtctttatg
ctgacaaaatgactaatttcgacagaaattctcaaaccattttcaaaaaa
ttttgtgccactaattattgtgatgctgataatacaaaaggatagaaatt
gacaccataatcaagctccaagagcgtcgaaatggttgttttacgtATTT
GGCACGTAGCTTTAAttagatgagacaggggtgagcttactcttcaatat
taaatatattcaaatgattaggagagacactctacgttggagaaagagaa
aaaactcgataacccaaatttatctggtcgctggtcgtggtcgccggtcg
tggtcgtcatttctggtcgacgtttagaaactcccctcGGAGACTGTTTC
AACAAAATAAACATCTCAAATACAAATCGAATGGACACATTACAGTACTG
CAGATGTTGTAGAATTTTCGTATCATTGGACCGGTACCTCATCCGCGGTG
GGATCTGCGATCGCTGCTCTCTGCGATATACAAGTATTTACTATAATAAC
GCATACAGTTCTCGGTTCAGTATGAATGATGTAATATATATCAAAATCTG
GTCTTTGAACACAGAAAGGCTAACTATGATTTGGGATTTTGCTATTCATC
AGTCCAGTTACATCAAAGATGTAAAACAATTGGTGTCCAAAATAACCgga
atctcttttgaaaataatagaTTGTATCATTTACGTGAAAATCCTCATAT
TGGGCAAGAAATTCGACCATCCAAACATTGCCATTCCATATGGCACCCTT
TGAATGATTTTGAGACAATAGAGTACCATTACAGCATCACTAAAGGACCT
AAAGAATTGAATTATTACCGTCGCACTAATTATGATGATATAAAAGTAGA
CAAAGTAGACAAGTATATggttgttgaaaataaaaccaaaatttcaatca
tgtgtaataaaaactttgaagaacCGAAGGAAATTTGCTCGTTCGAAATC
GATAGATCCAGCAGTATTAAAGATATTAAAGAAATGGTTGCTAAGATTAT
CGACNGTTCCAAAGACTGGGAACGAATATATCTAACGTCATTGAGTGGTG
GCGATCATGATTCACAAAAGATATGTGATAGCTACAATATAAACTGTATA
TCAACATTTCGATTAAATTTCTTGACAAAAACAGTGGAGTTGAAGTTCCA
AAACTTTCGGTTAATAAGAGATGTGAAAATTCATATTCAAAAAGAATTTA
ACATCAGAGTTGGTGACCAAGTTCTGATTTATAAAGGTAAAAAATTGATG
GAGAATCAAAGAACTAGAGATGTGTTTCTTGAAAATCAAATGAATTCATT
AAGAGACGTATCTATTAGCTTGGTGATTGAAAAAAAGCCATTCATGCTCA
GAATAGAACCTCAAATACGATCTATGTCATGGTTTAGCATATCTATCAAT
GATTCTGACAACATTGAAGAGGTGAAGCAGCAAATACAAGCAAAAACAGA
TATTCCTATCCAAAACATACATCTCATTGACCAAAAAACGCAAGACATTT
TGTGTGATACAAAAAAAGTCGAAGATTATAAGTTTCTGGATTATTCAAAT
ATAACTTTGCAACGAAAACTAGTCATTAGACTTCACTTTGCAAAAGATAA
TCGAATCGAGGagagatttgaaattttaccaggGTATGAAGNTAGTCATT
AGACTTCACTTTGCAAAAGATAATCGAGTCGAGGagagatttgaaatttt
accagaGTATGGTGAAAAAAGAACCGTCTTAGACCTCTTGGAAGAAATCC
GCGAATCTTTCTTACCGAAGGAAATGAATGTTGAGGAAATTAGAGATCGT
ATTGGCACTACAAAAGACACCCTGATTACAAATATCTATGAAATAGATTT
TAGAATcaagaaaactaaaaaatgctcAATAATGTAGCtcaaaatgtata
taatatctgatcaatgttatttttttgtaagagtAACGGAACTCTAgtta
aactagtcatagctttcactaaatgcccacgcagaagatcatgtcatgca
cttaaagcttttaatgctttaaagattaaagtagta Run BLAST on NCBI protein sequence of TCONS_00000376-protein >TCONS_00000376-protein ID=TCONS_00000376-protein|Name=TCONS_00000376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MDTLQYCRCCRIFVSLDRYLIRGGICDRCSLRYTSIYYNNAYSSRFSMND
VIYIKIWSLNTERLTMIWDFAIHQSSYIKDVKQLVSKITGISFENNRLYH
LRENPHIGQEIRPSKHCHSIWHPLNDFETIEYHYSITKGPKELNYYRRTN
YDDIKVDKVDKYMVVENKTKISIMCNKNFEEPKEICSFEIDRSSSIKDIK
EMVAKIIDXSKDWERIYLTSLSGGDHDSQKICDSYNINCISTFRLNFLTK
TVELKFQNFRLIRDVKIHIQKEFNIRVGDQVLIYKGKKLMENQRTRDVFL
ENQMNSLRDVSISLVIEKKPFMLRIEPQIRSMSWFSISINDSDNIEEVKQ
QIQAKTDIPIQNIHLIDQKTQDILCDTKKVEDYKFLDYSNITLQRKLVIR
LHFAKDNRIEERFEILPGYEXSH Run BLAST on NCBI transcript from alignment at sc0000001:2401328..2403863 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000376 ID=TCONS_00000376|Name=TCONS_00000376|organism=Clytia hemisphaerica|type=transcript|length=2536bp|location=Sequence derived from alignment at sc0000001:2401328..2403863 (Clytia hemisphaerica)
tactactttaatctttaaagcattaaaagctttaagtgcatgacatgatc
ttctgcgtgggcatttagtgaaagctatgactagtttaacTAGAGTTCCG
TTactcttacaaaaaaataacattgatcagatattatatacattttgaGC
TACATTATTgagcattttttagttttcttgATTCTAAAATCTATTTCATA
GATATTTGTAATCAGGGTGTCTTTTGTAGTGCCAATACGATCTCTAATTT
CCTCAACATTCATTTCCTTCGGTAAGAAAGATTCGCGGATTTCTTCCAAG
AGGTCTAAGACGGTTCTTTTTTCACCATACtctggtaaaatttcaaatct
ctCCTCGACTCGATTATCTTTTGCAAAGTGAAGTCTAATGACTANCTTCA
TACcctggtaaaatttcaaatctctCCTCGATTCGATTATCTTTTGCAAA
GTGAAGTCTAATGACTAGTTTTCGTTGCAAAGTTATATTTGAATAATCCA
GAAACTTATAATCTTCGACTTTTTTTGTATCACACAAAATGTCTTGCGTT
TTTTGGTCAATGAGATGTATGTTTTGGATAGGAATATCTGTTTTTGCTTG
TATTTGCTGCTTCACCTCTTCAATGTTGTCAGAATCATTGATAGATATGC
TAAACCATGACATAGATCGTATTTGAGGTTCTATTCTGAGCATGAATGGC
TTTTTTTCAATCACCAAGCTAATAGATACGTCTCTTAATGAATTCATTTG
ATTTTCAAGAAACACATCTCTAGTTCTTTGATTCTCCATCAATTTTTTAC
CTTTATAAATCAGAACTTGGTCACCAACTCTGATGTTAAATTCTTTTTGA
ATATGAATTTTCACATCTCTTATTAACCGAAAGTTTTGGAACTTCAACTC
CACTGTTTTTGTCAAGAAATTTAATCGAAATGTTGATATACAGTTTATAT
TGTAGCTATCACATATCTTTTGTGAATCATGATCGCCACCACTCAATGAC
GTTAGATATATTCGTTCCCAGTCTTTGGAACNGTCGATAATCTTAGCAAC
CATTTCTTTAATATCTTTAATACTGCTGGATCTATCGATTTCGAACGAGC
AAATTTCCTTCGgttcttcaaagtttttattacacatgattgaaattttg
gttttattttcaacaaccATATACTTGTCTACTTTGTCTACTTTTATATC
ATCATAATTAGTGCGACGGTAATAATTCAATTCTTTAGGTCCTTTAGTGA
TGCTGTAATGGTACTCTATTGTCTCAAAATCATTCAAAGGGTGCCATATG
GAATGGCAATGTTTGGATGGTCGAATTTCTTGCCCAATATGAGGATTTTC
ACGTAAATGATACAAtctattattttcaaaagagattccGGTTATTTTGG
ACACCAATTGTTTTACATCTTTGATGTAACTGGACTGATGAATAGCAAAA
TCCCAAATCATAGTTAGCCTTTCTGTGTTCAAAGACCAGATTTTGATATA
TATTACATCATTCATACTGAACCGAGAACTGTATGCGTTATTATAGTAAA
TACTTGTATATCGCAGAGAGCAGCGATCGCAGATCCCACCGCGGATGAGG
TACCGGTCCAATGATACGAAAATTCTACAACATCTGCAGTACTGTAATGT
GTCCATTCGATTTGTATTTGAGATGTTTATTTTGTTGAAACAGTCTCCga
ggggagtttctaaacgtcgaccagaaatgacgaccacgaccggcgaccac
gaccagcgaccagataaatttgggttatcgagttttttctctttctccaa
cgtagagtgtctctcctaatcatttgaatatatttaatattgaagagtaa
gctcacccctgtctcatctaaTTAAAGCTACGTGCCAAATacgtaaaaca
accatttcgacgctcttggagcttgattatggtgtcaatttctatccttt
tgtattatcagcatcacaataattagtggcacaaaattttttgaaaatgg
tttgagaatttctgtcgaaattagtcattttgtcagcataaagacaatag
aataattgattagatccatatctctaaaactggccttcccaattttttcc
tactgacaagttctatctattcatactaaaggcatcttattcagcataat
taaaatatttagtTTAACAAAGCTTACTTAAACATCATACTTttaatgac
cctgtcaatatttttgtcaaatagtgtcactttgtcaagaaaatgactgg
ttacttcaaaggccactttttagtattctgaggactCGATTTAAtcattc
tctacggtggagagagcagataaacttgataatccaaatttatctggtcg
gcggtcgtggtcgctggtcgtggtcgccatttctagtcgatgtttagaaa
ctcccgtcTCCGAGAACTGCCATTTTATTGACAATACTTATCCTTTAAGA
ATAGAAGTTTAGAAGAGAATAATATCACAATAATATGTCTTCGTCTTTGA
GTTTTATACGCTCTCTTCgctacttttttgattttt Coding sequence (CDS) from alignment at sc0000001:2401328..2403863 >TCONS_00000376 ID=TCONS_00000376|Name=TCONS_00000376|organism=Clytia hemisphaerica|type=CDS|length=1272bp|location=Sequence derived from alignment at sc0000001:2401328..2403863 (Clytia hemisphaerica)
CTAATGACTANCTTCATACcctggtaaaatttcaaatctctCCTCGATTC
GATTATCTTTTGCAAAGTGAAGTCTAATGACTAGTTTTCGTTGCAAAGTT
ATATTTGAATAATCCAGAAACTTATAATCTTCGACTTTTTTTGTATCACA
CAAAATGTCTTGCGTTTTTTGGTCAATGAGATGTATGTTTTGGATAGGAA
TATCTGTTTTTGCTTGTATTTGCTGCTTCACCTCTTCAATGTTGTCAGAA
TCATTGATAGATATGCTAAACCATGACATAGATCGTATTTGAGGTTCTAT
TCTGAGCATGAATGGCTTTTTTTCAATCACCAAGCTAATAGATACGTCTC
TTAATGAATTCATTTGATTTTCAAGAAACACATCTCTAGTTCTTTGATTC
TCCATCAATTTTTTACCTTTATAAATCAGAACTTGGTCACCAACTCTGAT
GTTAAATTCTTTTTGAATATGAATTTTCACATCTCTTATTAACCGAAAGT
TTTGGAACTTCAACTCCACTGTTTTTGTCAAGAAATTTAATCGAAATGTT
GATATACAGTTTATATTGTAGCTATCACATATCTTTTGTGAATCATGATC
GCCACCACTCAATGACGTTAGATATATTCGTTCCCAGTCTTTGGAACNGT
CGATAATCTTAGCAACCATTTCTTTAATATCTTTAATACTGCTGGATCTA
TCGATTTCGAACGAGCAAATTTCCTTCGgttcttcaaagtttttattaca
catgattgaaattttggttttattttcaacaaccATATACTTGTCTACTT
TGTCTACTTTTATATCATCATAATTAGTGCGACGGTAATAATTCAATTCT
TTAGGTCCTTTAGTGATGCTGTAATGGTACTCTATTGTCTCAAAATCATT
CAAAGGGTGCCATATGGAATGGCAATGTTTGGATGGTCGAATTTCTTGCC
CAATATGAGGATTTTCACGTAAATGATACAAtctattattttcaaaagag
attccGGTTATTTTGGACACCAATTGTTTTACATCTTTGATGTAACTGGA
CTGATGAATAGCAAAATCCCAAATCATAGTTAGCCTTTCTGTGTTCAAAG
ACCAGATTTTGATATATATTACATCATTCATACTGAACCGAGAACTGTAT
GCGTTATTATAGTAAATACTTGTATATCGCAGAGAGCAGCGATCGCAGAT
CCCACCGCGGATGAGGTACCGGTCCAATGATACGAAAATTCTACAACATC
TGCAGTACTGTAATGTGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000376-exon-sc0000001-1491911889:2401328..2403863 | TCONS_00000376-exon-sc0000001-1491911889:2401328..2403863 | Clytia hemisphaerica | exon |
| TCONS_00000376-exon-sc0000001-1510915933:2401328..2403863 | TCONS_00000376-exon-sc0000001-1510915933:2401328..2403863 | Clytia hemisphaerica | exon |
| TCONS_00000376-exon-sc0000001-1575043694:2401328..2403863 | TCONS_00000376-exon-sc0000001-1575043694:2401328..2403863 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2401328..2403863 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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