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TCONS_00000376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000376
Unique NameTCONS_00000376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000376 ID=TCONS_00000376|Name=TCONS_00000376|organism=Clytia hemisphaerica|type=transcript|length=2536bp
aaaaatcaaaaaagtagcGAAGAGAGCGTATAAAACTCAAAGACGAAGAC
ATATTATTGTGATATTATTCTCTTCTAAACTTCTATTCTTAAAGGATAAG
TATTGTCAATAAAATGGCAGTTCTCGGAgacgggagtttctaaacatcga
ctagaaatggcgaccacgaccagcgaccacgaccgccgaccagataaatt
tggattatcaagtttatctgctctctccaccgtagagaatgaTTAAATCG
agtcctcagaatactaaaaagtggcctttgaagtaaccagtcattttctt
gacaaagtgacactatttgacaaaaatattgacagggtcattaaAAGTAT
GATGTTTAAGTAAGCTTTGTTAAactaaatattttaattatgctgaataa
gatgcctttagtatgaatagatagaacttgtcagtaggaaaaaattggga
aggccagttttagagatatggatctaatcaattattctattgtctttatg
ctgacaaaatgactaatttcgacagaaattctcaaaccattttcaaaaaa
ttttgtgccactaattattgtgatgctgataatacaaaaggatagaaatt
gacaccataatcaagctccaagagcgtcgaaatggttgttttacgtATTT
GGCACGTAGCTTTAAttagatgagacaggggtgagcttactcttcaatat
taaatatattcaaatgattaggagagacactctacgttggagaaagagaa
aaaactcgataacccaaatttatctggtcgctggtcgtggtcgccggtcg
tggtcgtcatttctggtcgacgtttagaaactcccctcGGAGACTGTTTC
AACAAAATAAACATCTCAAATACAAATCGAATGGACACATTACAGTACTG
CAGATGTTGTAGAATTTTCGTATCATTGGACCGGTACCTCATCCGCGGTG
GGATCTGCGATCGCTGCTCTCTGCGATATACAAGTATTTACTATAATAAC
GCATACAGTTCTCGGTTCAGTATGAATGATGTAATATATATCAAAATCTG
GTCTTTGAACACAGAAAGGCTAACTATGATTTGGGATTTTGCTATTCATC
AGTCCAGTTACATCAAAGATGTAAAACAATTGGTGTCCAAAATAACCgga
atctcttttgaaaataatagaTTGTATCATTTACGTGAAAATCCTCATAT
TGGGCAAGAAATTCGACCATCCAAACATTGCCATTCCATATGGCACCCTT
TGAATGATTTTGAGACAATAGAGTACCATTACAGCATCACTAAAGGACCT
AAAGAATTGAATTATTACCGTCGCACTAATTATGATGATATAAAAGTAGA
CAAAGTAGACAAGTATATggttgttgaaaataaaaccaaaatttcaatca
tgtgtaataaaaactttgaagaacCGAAGGAAATTTGCTCGTTCGAAATC
GATAGATCCAGCAGTATTAAAGATATTAAAGAAATGGTTGCTAAGATTAT
CGACNGTTCCAAAGACTGGGAACGAATATATCTAACGTCATTGAGTGGTG
GCGATCATGATTCACAAAAGATATGTGATAGCTACAATATAAACTGTATA
TCAACATTTCGATTAAATTTCTTGACAAAAACAGTGGAGTTGAAGTTCCA
AAACTTTCGGTTAATAAGAGATGTGAAAATTCATATTCAAAAAGAATTTA
ACATCAGAGTTGGTGACCAAGTTCTGATTTATAAAGGTAAAAAATTGATG
GAGAATCAAAGAACTAGAGATGTGTTTCTTGAAAATCAAATGAATTCATT
AAGAGACGTATCTATTAGCTTGGTGATTGAAAAAAAGCCATTCATGCTCA
GAATAGAACCTCAAATACGATCTATGTCATGGTTTAGCATATCTATCAAT
GATTCTGACAACATTGAAGAGGTGAAGCAGCAAATACAAGCAAAAACAGA
TATTCCTATCCAAAACATACATCTCATTGACCAAAAAACGCAAGACATTT
TGTGTGATACAAAAAAAGTCGAAGATTATAAGTTTCTGGATTATTCAAAT
ATAACTTTGCAACGAAAACTAGTCATTAGACTTCACTTTGCAAAAGATAA
TCGAATCGAGGagagatttgaaattttaccaggGTATGAAGNTAGTCATT
AGACTTCACTTTGCAAAAGATAATCGAGTCGAGGagagatttgaaatttt
accagaGTATGGTGAAAAAAGAACCGTCTTAGACCTCTTGGAAGAAATCC
GCGAATCTTTCTTACCGAAGGAAATGAATGTTGAGGAAATTAGAGATCGT
ATTGGCACTACAAAAGACACCCTGATTACAAATATCTATGAAATAGATTT
TAGAATcaagaaaactaaaaaatgctcAATAATGTAGCtcaaaatgtata
taatatctgatcaatgttatttttttgtaagagtAACGGAACTCTAgtta
aactagtcatagctttcactaaatgcccacgcagaagatcatgtcatgca
cttaaagcttttaatgctttaaagattaaagtagta
Run BLAST on NCBI

protein sequence of TCONS_00000376-protein

>TCONS_00000376-protein ID=TCONS_00000376-protein|Name=TCONS_00000376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MDTLQYCRCCRIFVSLDRYLIRGGICDRCSLRYTSIYYNNAYSSRFSMND
VIYIKIWSLNTERLTMIWDFAIHQSSYIKDVKQLVSKITGISFENNRLYH
LRENPHIGQEIRPSKHCHSIWHPLNDFETIEYHYSITKGPKELNYYRRTN
YDDIKVDKVDKYMVVENKTKISIMCNKNFEEPKEICSFEIDRSSSIKDIK
EMVAKIIDXSKDWERIYLTSLSGGDHDSQKICDSYNINCISTFRLNFLTK
TVELKFQNFRLIRDVKIHIQKEFNIRVGDQVLIYKGKKLMENQRTRDVFL
ENQMNSLRDVSISLVIEKKPFMLRIEPQIRSMSWFSISINDSDNIEEVKQ
QIQAKTDIPIQNIHLIDQKTQDILCDTKKVEDYKFLDYSNITLQRKLVIR
LHFAKDNRIEERFEILPGYEXSH
Run BLAST on NCBI

transcript from alignment at sc0000001:2401328..2403863

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000376 ID=TCONS_00000376|Name=TCONS_00000376|organism=Clytia hemisphaerica|type=transcript|length=2536bp|location=Sequence derived from alignment at sc0000001:2401328..2403863 (Clytia hemisphaerica)
tactactttaatctttaaagcattaaaagctttaagtgcatgacatgatc ttctgcgtgggcatttagtgaaagctatgactagtttaacTAGAGTTCCG TTactcttacaaaaaaataacattgatcagatattatatacattttgaGC TACATTATTgagcattttttagttttcttgATTCTAAAATCTATTTCATA GATATTTGTAATCAGGGTGTCTTTTGTAGTGCCAATACGATCTCTAATTT CCTCAACATTCATTTCCTTCGGTAAGAAAGATTCGCGGATTTCTTCCAAG AGGTCTAAGACGGTTCTTTTTTCACCATACtctggtaaaatttcaaatct ctCCTCGACTCGATTATCTTTTGCAAAGTGAAGTCTAATGACTANCTTCA TACcctggtaaaatttcaaatctctCCTCGATTCGATTATCTTTTGCAAA GTGAAGTCTAATGACTAGTTTTCGTTGCAAAGTTATATTTGAATAATCCA GAAACTTATAATCTTCGACTTTTTTTGTATCACACAAAATGTCTTGCGTT TTTTGGTCAATGAGATGTATGTTTTGGATAGGAATATCTGTTTTTGCTTG TATTTGCTGCTTCACCTCTTCAATGTTGTCAGAATCATTGATAGATATGC TAAACCATGACATAGATCGTATTTGAGGTTCTATTCTGAGCATGAATGGC TTTTTTTCAATCACCAAGCTAATAGATACGTCTCTTAATGAATTCATTTG ATTTTCAAGAAACACATCTCTAGTTCTTTGATTCTCCATCAATTTTTTAC CTTTATAAATCAGAACTTGGTCACCAACTCTGATGTTAAATTCTTTTTGA ATATGAATTTTCACATCTCTTATTAACCGAAAGTTTTGGAACTTCAACTC CACTGTTTTTGTCAAGAAATTTAATCGAAATGTTGATATACAGTTTATAT TGTAGCTATCACATATCTTTTGTGAATCATGATCGCCACCACTCAATGAC GTTAGATATATTCGTTCCCAGTCTTTGGAACNGTCGATAATCTTAGCAAC CATTTCTTTAATATCTTTAATACTGCTGGATCTATCGATTTCGAACGAGC AAATTTCCTTCGgttcttcaaagtttttattacacatgattgaaattttg gttttattttcaacaaccATATACTTGTCTACTTTGTCTACTTTTATATC ATCATAATTAGTGCGACGGTAATAATTCAATTCTTTAGGTCCTTTAGTGA TGCTGTAATGGTACTCTATTGTCTCAAAATCATTCAAAGGGTGCCATATG GAATGGCAATGTTTGGATGGTCGAATTTCTTGCCCAATATGAGGATTTTC ACGTAAATGATACAAtctattattttcaaaagagattccGGTTATTTTGG ACACCAATTGTTTTACATCTTTGATGTAACTGGACTGATGAATAGCAAAA TCCCAAATCATAGTTAGCCTTTCTGTGTTCAAAGACCAGATTTTGATATA TATTACATCATTCATACTGAACCGAGAACTGTATGCGTTATTATAGTAAA TACTTGTATATCGCAGAGAGCAGCGATCGCAGATCCCACCGCGGATGAGG TACCGGTCCAATGATACGAAAATTCTACAACATCTGCAGTACTGTAATGT GTCCATTCGATTTGTATTTGAGATGTTTATTTTGTTGAAACAGTCTCCga ggggagtttctaaacgtcgaccagaaatgacgaccacgaccggcgaccac gaccagcgaccagataaatttgggttatcgagttttttctctttctccaa cgtagagtgtctctcctaatcatttgaatatatttaatattgaagagtaa gctcacccctgtctcatctaaTTAAAGCTACGTGCCAAATacgtaaaaca accatttcgacgctcttggagcttgattatggtgtcaatttctatccttt tgtattatcagcatcacaataattagtggcacaaaattttttgaaaatgg tttgagaatttctgtcgaaattagtcattttgtcagcataaagacaatag aataattgattagatccatatctctaaaactggccttcccaattttttcc tactgacaagttctatctattcatactaaaggcatcttattcagcataat taaaatatttagtTTAACAAAGCTTACTTAAACATCATACTTttaatgac cctgtcaatatttttgtcaaatagtgtcactttgtcaagaaaatgactgg ttacttcaaaggccactttttagtattctgaggactCGATTTAAtcattc tctacggtggagagagcagataaacttgataatccaaatttatctggtcg gcggtcgtggtcgctggtcgtggtcgccatttctagtcgatgtttagaaa ctcccgtcTCCGAGAACTGCCATTTTATTGACAATACTTATCCTTTAAGA ATAGAAGTTTAGAAGAGAATAATATCACAATAATATGTCTTCGTCTTTGA GTTTTATACGCTCTCTTCgctacttttttgattttt

Coding sequence (CDS) from alignment at sc0000001:2401328..2403863

>TCONS_00000376 ID=TCONS_00000376|Name=TCONS_00000376|organism=Clytia hemisphaerica|type=CDS|length=1272bp|location=Sequence derived from alignment at sc0000001:2401328..2403863 (Clytia hemisphaerica)
CTAATGACTANCTTCATACcctggtaaaatttcaaatctctCCTCGATTC
GATTATCTTTTGCAAAGTGAAGTCTAATGACTAGTTTTCGTTGCAAAGTT
ATATTTGAATAATCCAGAAACTTATAATCTTCGACTTTTTTTGTATCACA
CAAAATGTCTTGCGTTTTTTGGTCAATGAGATGTATGTTTTGGATAGGAA
TATCTGTTTTTGCTTGTATTTGCTGCTTCACCTCTTCAATGTTGTCAGAA
TCATTGATAGATATGCTAAACCATGACATAGATCGTATTTGAGGTTCTAT
TCTGAGCATGAATGGCTTTTTTTCAATCACCAAGCTAATAGATACGTCTC
TTAATGAATTCATTTGATTTTCAAGAAACACATCTCTAGTTCTTTGATTC
TCCATCAATTTTTTACCTTTATAAATCAGAACTTGGTCACCAACTCTGAT
GTTAAATTCTTTTTGAATATGAATTTTCACATCTCTTATTAACCGAAAGT
TTTGGAACTTCAACTCCACTGTTTTTGTCAAGAAATTTAATCGAAATGTT
GATATACAGTTTATATTGTAGCTATCACATATCTTTTGTGAATCATGATC
GCCACCACTCAATGACGTTAGATATATTCGTTCCCAGTCTTTGGAACNGT
CGATAATCTTAGCAACCATTTCTTTAATATCTTTAATACTGCTGGATCTA
TCGATTTCGAACGAGCAAATTTCCTTCGgttcttcaaagtttttattaca
catgattgaaattttggttttattttcaacaaccATATACTTGTCTACTT
TGTCTACTTTTATATCATCATAATTAGTGCGACGGTAATAATTCAATTCT
TTAGGTCCTTTAGTGATGCTGTAATGGTACTCTATTGTCTCAAAATCATT
CAAAGGGTGCCATATGGAATGGCAATGTTTGGATGGTCGAATTTCTTGCC
CAATATGAGGATTTTCACGTAAATGATACAAtctattattttcaaaagag
attccGGTTATTTTGGACACCAATTGTTTTACATCTTTGATGTAACTGGA
CTGATGAATAGCAAAATCCCAAATCATAGTTAGCCTTTCTGTGTTCAAAG
ACCAGATTTTGATATATATTACATCATTCATACTGAACCGAGAACTGTAT
GCGTTATTATAGTAAATACTTGTATATCGCAGAGAGCAGCGATCGCAGAT
CCCACCGCGGATGAGGTACCGGTCCAATGATACGAAAATTCTACAACATC
TGCAGTACTGTAATGTGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000250XLOC_000250Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000376-proteinTCONS_00000376-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000376-exon-sc0000001-1491911889:2401328..2403863TCONS_00000376-exon-sc0000001-1491911889:2401328..2403863Clytia hemisphaericaexon
TCONS_00000376-exon-sc0000001-1510915933:2401328..2403863TCONS_00000376-exon-sc0000001-1510915933:2401328..2403863Clytia hemisphaericaexon
TCONS_00000376-exon-sc0000001-1575043694:2401328..2403863TCONS_00000376-exon-sc0000001-1575043694:2401328..2403863Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2401328..2403863 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.434454 0.424819 0.740039 1.02941 0.934722 0.687934 0.653274 0.95226 0.45589 0.459018 0.978821 0.499834 1.68891 1.83873 0.802761 0.643585 2.2521 1.7952 3.81744 3.16674 7.48904 6.095 4.48575 4.68815 4.77862 5.41551 11.9678 12.1338 1.00996 0.63097
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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