TCONS_00000299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000299
Unique NameTCONS_00000299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000299 ID=TCONS_00000299|Name=TCONS_00000299|organism=Clytia hemisphaerica|type=transcript|length=2647bp
AATATAAATGCCGTAGAAACCGACTCTAATTTGACGTGCACTGTCTGTGT
ACAACCTTGCCTAGGTTGACACCAGCCTTCAAGCCAAGAAGATCACTcta
ctgtaaaaatttttcaattaaccGGGTCGCATATTTTTGGTAacgtgaaa
taaaataaaatattccgGTTTTGTGTTTGATTATCACATCGAGTTGAGGA
TAAGTTTATGCtaataaaaagttgaaaaatttgtttgtaaactatctgaa
gtaaaaaagtaaaagaattttttctcttctttatCGTGTTTTATAAGCGT
AAGCGCTGTTCAAGAAAAGAATTCACAATTCACTGCAAATATTAAATCTT
ATAAAAGAGAGCAGCTGTGCCTTAGAGGAGTAACCTAGATTAAGTGAATG
GGCCTTTTGTTTGAGctaagaaattttaaaagccaaaagagagaattttg
aaataattgatGTTACGTTTCGTAGagaaaaatttgtgtttttatggtgt
ttttactttttgttttgatttcatcttCAACGGccaaaatgataataaaa
aattttcctgtttttgcGAGCCCCTTGCGCAACACCGAAAACCTAATTCG
AAAAGAAAATATGTTAAACCAAATTCAATCCAATACgcaaacaatcaaaa
tcttgTAGAGTTCATAACTATTATATTGCAAGTTTTTTGTCCTTCTTCTT
CCACTTCGCTCCAAGCCACCGAGCCTTATGATAGCCAAAGACAATACAAT
AAGCTATTACAGCCTCAATGACCCCAAATGTCCAGCGACAATCCCTAAAC
GACCAGCGgcaatcaccttggccaacatcccCAAAACCACTGACAATCAC
TTTGGCCAACATCCCCAAAACCAGCgacaatcaccttggccaaccTCCCC
AAAACCAGCgacaatcaccttggccaaccTCCCCAAAACCAGCgacaatc
accttggccaacatcccCAAAACCACCGACAATCACCTTGGCCATCATCT
CCAAAAAACCAGCTACAATCACCCAAGCCAGATATTAGTTGCAGATTTTG
TTATGCACTTGATAAAATCTTAATGGTTCGtttcataaagtttttcaaag
aatcTGGTCTCCTTCCGTTCGTATGCAACAAAAATTGTACGCTTCATTTC
ACAAACTACTTTTGTATCTATGAATGTCCATCCTCAAAATCTCTTTGCGT
TCGGTAAAAGTGATGGTTATGAATTAACCCGAAGAGATATCGGAAgattc
aataaaaatatttcatcctgtcagctttcagttagagcgTCGACTTGAAC
AGGGAGTTGCGATAGCCATTATGAACATGACGTCACGTGGTtattagcaa
agtagactcagttggcAGAGGGCGGCCCCCCAGCCATTCCAATACTGTgg
cgcttatcaaataaaagttaaaccacgatttaacctgtgttaaatccaaa
tttgggtgaaaagtAATATTATATTCTATCAAATGATAATTTGAAGTTTA
AATATTTAGAACtcatttttcattgaaagtGACACAAGTGTGTtcgaaaa
tttgatttgattgtcatTTTTCAACGAATACTTCAATATTAACAAATAAt
acaccgttgaaaagataattgagAGCACtataatttcaatttgttttaaT
CAAGAATTAACTCCACCAAAATAGTCAAAGAAACTCTATGCTGtaacaac
aaaaaataataatatataaTGCGAATAAAATAACCCTCCGTGCCTGCACA
tacctaaataaaaaattaccaaaTTCTTCCGTTTATTATTAATAATAAAA
TTTACATCTAACGAATAAGACTTCTATGTATGTCTGTTTATGTATGAACT
TGATACAGGCGttcaataaatattaaaaaaataaattcagttTTCCCCTA
AAACTAATAAATGGTCTCCTGGACTTTGATTTGAGATTTGAATACACTGA
ATAGCAAGAGCAGAACTCCATTCCATTCAATTTCCATTGCCATGCTATTT
TCTTGCTTTCCAAATCTATACGTACTCTTAAGTTCCAAATAACTCCCcgt
ttttcaacgttcatttaacgctTTAATAACTTTTGGGGGGATCTAATTGC
CGGGGAGGGGGacgttggaaattgtacttctgaaaacccaaaaataagat
AAGCATATACTAAAATCAGGCTatatagagcaaaataaggggccttctct
ttgacagctgaaaatattaaatataaaaaaacgggggggggggtcctaat
aaggtccggggtgctgaaaattttcgaaaaaatttatttggaacGTAAGA
GTGAGTAAACTCAAGTTGAGaagcattttttgaaagataattTGTCATTG
ATAAAAAACGAACATAAGATCTTGTCACTATTTTTGCTTGTGTACAATTG
AGAGTATCGCAAATAGTAAGGTACTGTTCAAAAATAGCAGAAATGTGTCC
TACCTTCCAAAAAGCCTCATATGAAGCGCTATATGAActttgaaaaaacg
ttgtgagCTGCCTTAGGAGTAGTAAAAAAACAACAGATCTTTAGACACGA
ATAGTACCAGTAGTACTGCCAGTAATACTTCTACTACCAAAAGAAACTAA
ATCACATatactaaaaatgaaagtttctttttcaaaaccccCTATAA
Run BLAST on NCBI

protein sequence of TCONS_00000299-protein

>TCONS_00000299-protein ID=TCONS_00000299-protein|Name=TCONS_00000299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MIAKDNTISYYSLNDPKCPATIPKRPAAITLANIPKTTDNHFGQHPQNQR
QSPWPTSPKPATITLANLPKTSDNHLGQHPQNHRQSPWPSSPKNQLQSPK
PDISCRFCYALDKILMVRFIKFFKESGLLPFVCNKNCTLHFTNYFCIYEC
PSSKSLCVR
Run BLAST on NCBI

transcript from alignment at sc0000001:807418..810064

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000299 ID=TCONS_00000299|Name=TCONS_00000299|organism=Clytia hemisphaerica|type=transcript|length=2647bp|location=Sequence derived from alignment at sc0000001:807418..810064 (Clytia hemisphaerica)
TTATAGggggttttgaaaaagaaactttcatttttagtatATGTGATTTA GTTTCTTTTGGTAGTAGAAGTATTACTGGCAGTACTACTGGTACTATTCG TGTCTAAAGATCTGTTGTTTTTTTACTACTCCTAAGGCAGctcacaacgt tttttcaaagTTCATATAGCGCTTCATATGAGGCTTTTTGGAAGGTAGGA CACATTTCTGCTATTTTTGAACAGTACCTTACTATTTGCGATACTCTCAA TTGTACACAAGCAAAAATAGTGACAAGATCTTATGTTCGTTTTTTATCAA TGACAaattatctttcaaaaaatgcttCTCAACTTGAGTTTACTCACTCT TACgttccaaataaattttttcgaaaattttcagcaccccggaccttatt aggacccccccccccgtttttttatatttaatattttcagctgtcaaaga gaaggccccttattttgctctatatAGCCTGATTTTAGTATATGCTTatc ttatttttgggttttcagaagtacaatttccaacgtCCCCCTCCCCGGCA ATTAGATCCCCCCAAAAGTTATTAAagcgttaaatgaacgttgaaaaacg GGGAGTTATTTGGAACTTAAGAGTACGTATAGATTTGGAAAGCAAGAAAA TAGCATGGCAATGGAAATTGAATGGAATGGAGTTCTGCTCTTGCTATTCA GTGTATTCAAATCTCAAATCAAAGTCCAGGAGACCATTTATTAGTTTTAG GGGAAaactgaatttatttttttaatatttattgaaCGCCTGTATCAAGT TCATACATAAACAGACATACATAGAAGTCTTATTCGTTAGATGTAAATTT TATTATTAATAATAAACGGAAGAAtttggtaattttttatttaggtaTGT GCAGGCACGGAGGGTTATTTTATTCGCAttatatattattattttttgtt gttaCAGCATAGAGTTTCTTTGACTATTTTGGTGGAGTTAATTCTTGAtt aaaacaaattgaaattataGTGCTctcaattatcttttcaacggtgtaTT ATTTGTTAATATTGAAGTATTCGTTGAAAAatgacaatcaaatcaaattt tcgaACACACTTGTGTCactttcaatgaaaaatgaGTTCTAAATATTTAA ACTTCAAATTATCATTTGATAGAATATAATATTacttttcacccaaattt ggatttaacacaggttaaatcgtggtttaacttttatttgataagcgccA CAGTATTGGAATGGCTGGGGGGCCGCCCTCTgccaactgagtctactttg ctaataACCACGTGACGTCATGTTCATAATGGCTATCGCAACTCCCTGTT CAAGTCGAcgctctaactgaaagctgacaggatgaaatatttttattgaa tcTTCCGATATCTCTTCGGGTTAATTCATAACCATCACTTTTACCGAACG CAAAGAGATTTTGAGGATGGACATTCATAGATACAAAAGTAGTTTGTGAA ATGAAGCGTACAATTTTTGTTGCATACGAACGGAAGGAGACCAgattctt tgaaaaactttatgaaaCGAACCATTAAGATTTTATCAAGTGCATAACAA AATCTGCAACTAATATCTGGCTTGGGTGATTGTAGCTGGTTTTTTGGAGA TGATGGCCAAGGTGATTGTCGGTGGTTTTGgggatgttggccaaggtgat tgtcGCTGGTTTTGGGGAggttggccaaggtgattgtcGCTGGTTTTGGG GAggttggccaaggtgattgtcGCTGGTTTTGGGGATGTTGGCCAAAGTG ATTGTCAGTGGTTTTGgggatgttggccaaggtgattgcCGCTGGTCGTT TAGGGATTGTCGCTGGACATTTGGGGTCATTGAGGCTGTAATAGCTTATT GTATTGTCTTTGGCTATCATAAGGCTCGGTGGCTTGGAGCGAAGTGGAAG AAGAAGGACAAAAAACTTGCAATATAATAGTTATGAACTCTAcaagattt tgattgtttgcGTATTGGATTGAATTTGGTTTAACATATTTTCTTTTCGA ATTAGGTTTTCGGTGTTGCGCAAGGGGCTCgcaaaaacaggaaaattttt tattatcattttggCCGTTGaagatgaaatcaaaacaaaaagtaaaaaca ccataaaaacacaaatttttctCTACGAAACGTAACatcaattatttcaa aattctctcttttggcttttaaaatttcttagCTCAAACAAAAGGCCCAT TCACTTAATCTAGGTTACTCCTCTAAGGCACAGCTGCTCTCTTTTATAAG ATTTAATATTTGCAGTGAATTGTGAATTCTTTTCTTGAACAGCGCTTACG CTTATAAAACACGataaagaagagaaaaaattcttttacttttttacttc agatagtttacaaacaaatttttcaactttttattaGCATAAACTTATCC TCAACTCGATGTGATAATCAAACACAAAACcggaatattttattttattt cacgtTACCAAAAATATGCGACCCggttaattgaaaaatttttacagtag AGTGATCTTCTTGGCTTGAAGGCTGGTGTCAACCTAGGCAAGGTTGTACA CAGACAGTGCACGTCAAATTAGAGTCGGTTTCTACGGCATTTATATT

Coding sequence (CDS) from alignment at sc0000001:807418..810064

>TCONS_00000299 ID=TCONS_00000299|Name=TCONS_00000299|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0000001:807418..810064 (Clytia hemisphaerica)
TTACCGAACGCAAAGAGATTTTGAGGATGGACATTCATAGATACAAAAGT
AGTTTGTGAAATGAAGCGTACAATTTTTGTTGCATACGAACGGAAGGAGA
CCAgattctttgaaaaactttatgaaaCGAACCATTAAGATTTTATCAAG
TGCATAACAAAATCTGCAACTAATATCTGGCTTGGGTGATTGTAGCTGGT
TTTTTGGAGATGATGGCCAAGGTGATTGTCGGTGGTTTTGgggatgttgg
ccaaggtgattgtcGCTGGTTTTGGGGAggttggccaaggtgattgtcGC
TGGTTTTGGGGAggttggccaaggtgattgtcGCTGGTTTTGGGGATGTT
GGCCAAAGTGATTGTCAGTGGTTTTGgggatgttggccaaggtgattgcC
GCTGGTCGTTTAGGGATTGTCGCTGGACATTTGGGGTCATTGAGGCTGTA
ATAGCTTATTGTATTGTCTTTGGCTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000173XLOC_000173Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000299-proteinTCONS_00000299-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000299-exon-sc0000001-1491911889:807418..810064TCONS_00000299-exon-sc0000001-1491911889:807418..810064Clytia hemisphaericaexon
TCONS_00000299-exon-sc0000001-1510915933:807418..810064TCONS_00000299-exon-sc0000001-1510915933:807418..810064Clytia hemisphaericaexon
TCONS_00000299-exon-sc0000001-1575043694:807418..810064TCONS_00000299-exon-sc0000001-1575043694:807418..810064Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:807418..810064 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.243151 0.418934 0.615975 0.368605 0.9378 0.537245 2.49907 2.83875 1.9192 2.24099 3.68407 1.89551 2.87565 2.99696 2.66007 2.96133 2.69704 3.03705 1.46719 1.78181 2.56102 2.36864 0.75364 1.1589 3.10599 4.37285 1.20225 0.981749 0.435821 0.570946
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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