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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000299 ID=TCONS_00000299|Name=TCONS_00000299|organism=Clytia hemisphaerica|type=transcript|length=2647bp
AATATAAATGCCGTAGAAACCGACTCTAATTTGACGTGCACTGTCTGTGT
ACAACCTTGCCTAGGTTGACACCAGCCTTCAAGCCAAGAAGATCACTcta
ctgtaaaaatttttcaattaaccGGGTCGCATATTTTTGGTAacgtgaaa
taaaataaaatattccgGTTTTGTGTTTGATTATCACATCGAGTTGAGGA
TAAGTTTATGCtaataaaaagttgaaaaatttgtttgtaaactatctgaa
gtaaaaaagtaaaagaattttttctcttctttatCGTGTTTTATAAGCGT
AAGCGCTGTTCAAGAAAAGAATTCACAATTCACTGCAAATATTAAATCTT
ATAAAAGAGAGCAGCTGTGCCTTAGAGGAGTAACCTAGATTAAGTGAATG
GGCCTTTTGTTTGAGctaagaaattttaaaagccaaaagagagaattttg
aaataattgatGTTACGTTTCGTAGagaaaaatttgtgtttttatggtgt
ttttactttttgttttgatttcatcttCAACGGccaaaatgataataaaa
aattttcctgtttttgcGAGCCCCTTGCGCAACACCGAAAACCTAATTCG
AAAAGAAAATATGTTAAACCAAATTCAATCCAATACgcaaacaatcaaaa
tcttgTAGAGTTCATAACTATTATATTGCAAGTTTTTTGTCCTTCTTCTT
CCACTTCGCTCCAAGCCACCGAGCCTTATGATAGCCAAAGACAATACAAT
AAGCTATTACAGCCTCAATGACCCCAAATGTCCAGCGACAATCCCTAAAC
GACCAGCGgcaatcaccttggccaacatcccCAAAACCACTGACAATCAC
TTTGGCCAACATCCCCAAAACCAGCgacaatcaccttggccaaccTCCCC
AAAACCAGCgacaatcaccttggccaaccTCCCCAAAACCAGCgacaatc
accttggccaacatcccCAAAACCACCGACAATCACCTTGGCCATCATCT
CCAAAAAACCAGCTACAATCACCCAAGCCAGATATTAGTTGCAGATTTTG
TTATGCACTTGATAAAATCTTAATGGTTCGtttcataaagtttttcaaag
aatcTGGTCTCCTTCCGTTCGTATGCAACAAAAATTGTACGCTTCATTTC
ACAAACTACTTTTGTATCTATGAATGTCCATCCTCAAAATCTCTTTGCGT
TCGGTAAAAGTGATGGTTATGAATTAACCCGAAGAGATATCGGAAgattc
aataaaaatatttcatcctgtcagctttcagttagagcgTCGACTTGAAC
AGGGAGTTGCGATAGCCATTATGAACATGACGTCACGTGGTtattagcaa
agtagactcagttggcAGAGGGCGGCCCCCCAGCCATTCCAATACTGTgg
cgcttatcaaataaaagttaaaccacgatttaacctgtgttaaatccaaa
tttgggtgaaaagtAATATTATATTCTATCAAATGATAATTTGAAGTTTA
AATATTTAGAACtcatttttcattgaaagtGACACAAGTGTGTtcgaaaa
tttgatttgattgtcatTTTTCAACGAATACTTCAATATTAACAAATAAt
acaccgttgaaaagataattgagAGCACtataatttcaatttgttttaaT
CAAGAATTAACTCCACCAAAATAGTCAAAGAAACTCTATGCTGtaacaac
aaaaaataataatatataaTGCGAATAAAATAACCCTCCGTGCCTGCACA
tacctaaataaaaaattaccaaaTTCTTCCGTTTATTATTAATAATAAAA
TTTACATCTAACGAATAAGACTTCTATGTATGTCTGTTTATGTATGAACT
TGATACAGGCGttcaataaatattaaaaaaataaattcagttTTCCCCTA
AAACTAATAAATGGTCTCCTGGACTTTGATTTGAGATTTGAATACACTGA
ATAGCAAGAGCAGAACTCCATTCCATTCAATTTCCATTGCCATGCTATTT
TCTTGCTTTCCAAATCTATACGTACTCTTAAGTTCCAAATAACTCCCcgt
ttttcaacgttcatttaacgctTTAATAACTTTTGGGGGGATCTAATTGC
CGGGGAGGGGGacgttggaaattgtacttctgaaaacccaaaaataagat
AAGCATATACTAAAATCAGGCTatatagagcaaaataaggggccttctct
ttgacagctgaaaatattaaatataaaaaaacgggggggggggtcctaat
aaggtccggggtgctgaaaattttcgaaaaaatttatttggaacGTAAGA
GTGAGTAAACTCAAGTTGAGaagcattttttgaaagataattTGTCATTG
ATAAAAAACGAACATAAGATCTTGTCACTATTTTTGCTTGTGTACAATTG
AGAGTATCGCAAATAGTAAGGTACTGTTCAAAAATAGCAGAAATGTGTCC
TACCTTCCAAAAAGCCTCATATGAAGCGCTATATGAActttgaaaaaacg
ttgtgagCTGCCTTAGGAGTAGTAAAAAAACAACAGATCTTTAGACACGA
ATAGTACCAGTAGTACTGCCAGTAATACTTCTACTACCAAAAGAAACTAA
ATCACATatactaaaaatgaaagtttctttttcaaaaccccCTATAA Run BLAST on NCBI protein sequence of TCONS_00000299-protein >TCONS_00000299-protein ID=TCONS_00000299-protein|Name=TCONS_00000299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MIAKDNTISYYSLNDPKCPATIPKRPAAITLANIPKTTDNHFGQHPQNQR
QSPWPTSPKPATITLANLPKTSDNHLGQHPQNHRQSPWPSSPKNQLQSPK
PDISCRFCYALDKILMVRFIKFFKESGLLPFVCNKNCTLHFTNYFCIYEC
PSSKSLCVR Run BLAST on NCBI transcript from alignment at sc0000001:807418..810064 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000299 ID=TCONS_00000299|Name=TCONS_00000299|organism=Clytia hemisphaerica|type=transcript|length=2647bp|location=Sequence derived from alignment at sc0000001:807418..810064 (Clytia hemisphaerica)
TTATAGggggttttgaaaaagaaactttcatttttagtatATGTGATTTA
GTTTCTTTTGGTAGTAGAAGTATTACTGGCAGTACTACTGGTACTATTCG
TGTCTAAAGATCTGTTGTTTTTTTACTACTCCTAAGGCAGctcacaacgt
tttttcaaagTTCATATAGCGCTTCATATGAGGCTTTTTGGAAGGTAGGA
CACATTTCTGCTATTTTTGAACAGTACCTTACTATTTGCGATACTCTCAA
TTGTACACAAGCAAAAATAGTGACAAGATCTTATGTTCGTTTTTTATCAA
TGACAaattatctttcaaaaaatgcttCTCAACTTGAGTTTACTCACTCT
TACgttccaaataaattttttcgaaaattttcagcaccccggaccttatt
aggacccccccccccgtttttttatatttaatattttcagctgtcaaaga
gaaggccccttattttgctctatatAGCCTGATTTTAGTATATGCTTatc
ttatttttgggttttcagaagtacaatttccaacgtCCCCCTCCCCGGCA
ATTAGATCCCCCCAAAAGTTATTAAagcgttaaatgaacgttgaaaaacg
GGGAGTTATTTGGAACTTAAGAGTACGTATAGATTTGGAAAGCAAGAAAA
TAGCATGGCAATGGAAATTGAATGGAATGGAGTTCTGCTCTTGCTATTCA
GTGTATTCAAATCTCAAATCAAAGTCCAGGAGACCATTTATTAGTTTTAG
GGGAAaactgaatttatttttttaatatttattgaaCGCCTGTATCAAGT
TCATACATAAACAGACATACATAGAAGTCTTATTCGTTAGATGTAAATTT
TATTATTAATAATAAACGGAAGAAtttggtaattttttatttaggtaTGT
GCAGGCACGGAGGGTTATTTTATTCGCAttatatattattattttttgtt
gttaCAGCATAGAGTTTCTTTGACTATTTTGGTGGAGTTAATTCTTGAtt
aaaacaaattgaaattataGTGCTctcaattatcttttcaacggtgtaTT
ATTTGTTAATATTGAAGTATTCGTTGAAAAatgacaatcaaatcaaattt
tcgaACACACTTGTGTCactttcaatgaaaaatgaGTTCTAAATATTTAA
ACTTCAAATTATCATTTGATAGAATATAATATTacttttcacccaaattt
ggatttaacacaggttaaatcgtggtttaacttttatttgataagcgccA
CAGTATTGGAATGGCTGGGGGGCCGCCCTCTgccaactgagtctactttg
ctaataACCACGTGACGTCATGTTCATAATGGCTATCGCAACTCCCTGTT
CAAGTCGAcgctctaactgaaagctgacaggatgaaatatttttattgaa
tcTTCCGATATCTCTTCGGGTTAATTCATAACCATCACTTTTACCGAACG
CAAAGAGATTTTGAGGATGGACATTCATAGATACAAAAGTAGTTTGTGAA
ATGAAGCGTACAATTTTTGTTGCATACGAACGGAAGGAGACCAgattctt
tgaaaaactttatgaaaCGAACCATTAAGATTTTATCAAGTGCATAACAA
AATCTGCAACTAATATCTGGCTTGGGTGATTGTAGCTGGTTTTTTGGAGA
TGATGGCCAAGGTGATTGTCGGTGGTTTTGgggatgttggccaaggtgat
tgtcGCTGGTTTTGGGGAggttggccaaggtgattgtcGCTGGTTTTGGG
GAggttggccaaggtgattgtcGCTGGTTTTGGGGATGTTGGCCAAAGTG
ATTGTCAGTGGTTTTGgggatgttggccaaggtgattgcCGCTGGTCGTT
TAGGGATTGTCGCTGGACATTTGGGGTCATTGAGGCTGTAATAGCTTATT
GTATTGTCTTTGGCTATCATAAGGCTCGGTGGCTTGGAGCGAAGTGGAAG
AAGAAGGACAAAAAACTTGCAATATAATAGTTATGAACTCTAcaagattt
tgattgtttgcGTATTGGATTGAATTTGGTTTAACATATTTTCTTTTCGA
ATTAGGTTTTCGGTGTTGCGCAAGGGGCTCgcaaaaacaggaaaattttt
tattatcattttggCCGTTGaagatgaaatcaaaacaaaaagtaaaaaca
ccataaaaacacaaatttttctCTACGAAACGTAACatcaattatttcaa
aattctctcttttggcttttaaaatttcttagCTCAAACAAAAGGCCCAT
TCACTTAATCTAGGTTACTCCTCTAAGGCACAGCTGCTCTCTTTTATAAG
ATTTAATATTTGCAGTGAATTGTGAATTCTTTTCTTGAACAGCGCTTACG
CTTATAAAACACGataaagaagagaaaaaattcttttacttttttacttc
agatagtttacaaacaaatttttcaactttttattaGCATAAACTTATCC
TCAACTCGATGTGATAATCAAACACAAAACcggaatattttattttattt
cacgtTACCAAAAATATGCGACCCggttaattgaaaaatttttacagtag
AGTGATCTTCTTGGCTTGAAGGCTGGTGTCAACCTAGGCAAGGTTGTACA
CAGACAGTGCACGTCAAATTAGAGTCGGTTTCTACGGCATTTATATT Coding sequence (CDS) from alignment at sc0000001:807418..810064 >TCONS_00000299 ID=TCONS_00000299|Name=TCONS_00000299|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0000001:807418..810064 (Clytia hemisphaerica)
TTACCGAACGCAAAGAGATTTTGAGGATGGACATTCATAGATACAAAAGT
AGTTTGTGAAATGAAGCGTACAATTTTTGTTGCATACGAACGGAAGGAGA
CCAgattctttgaaaaactttatgaaaCGAACCATTAAGATTTTATCAAG
TGCATAACAAAATCTGCAACTAATATCTGGCTTGGGTGATTGTAGCTGGT
TTTTTGGAGATGATGGCCAAGGTGATTGTCGGTGGTTTTGgggatgttgg
ccaaggtgattgtcGCTGGTTTTGGGGAggttggccaaggtgattgtcGC
TGGTTTTGGGGAggttggccaaggtgattgtcGCTGGTTTTGGGGATGTT
GGCCAAAGTGATTGTCAGTGGTTTTGgggatgttggccaaggtgattgcC
GCTGGTCGTTTAGGGATTGTCGCTGGACATTTGGGGTCATTGAGGCTGTA
ATAGCTTATTGTATTGTCTTTGGCTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000299-exon-sc0000001-1491911889:807418..810064 | TCONS_00000299-exon-sc0000001-1491911889:807418..810064 | Clytia hemisphaerica | exon |
| TCONS_00000299-exon-sc0000001-1510915933:807418..810064 | TCONS_00000299-exon-sc0000001-1510915933:807418..810064 | Clytia hemisphaerica | exon |
| TCONS_00000299-exon-sc0000001-1575043694:807418..810064 | TCONS_00000299-exon-sc0000001-1575043694:807418..810064 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:807418..810064 . |
Blast
The following BLAST results are available for this feature:
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