|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000267 ID=TCONS_00000267|Name=TCONS_00000267|organism=Clytia hemisphaerica|type=transcript|length=5057bpRun BLAST on NCBI protein sequence of TCONS_00000267-protein >TCONS_00000267-protein ID=TCONS_00000267-protein|Name=TCONS_00000267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp MPTSSSAVERKLQSKNGASIKRAKSFNSTSAPTSPSLLRRNKQPALEPRLRun BLAST on NCBI transcript from alignment at sc0000001:2554670..2591373- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000267 ID=TCONS_00000267|Name=TCONS_00000267|organism=Clytia hemisphaerica|type=transcript|length=36704bp|location=Sequence derived from alignment at sc0000001:2554670..2591373- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:2554670..2591373- >TCONS_00000267 ID=TCONS_00000267|Name=TCONS_00000267|organism=Clytia hemisphaerica|type=CDS|length=21840bp|location=Sequence derived from alignment at sc0000001:2554670..2591373- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000267 vs. Swiss-Prot (Human)
Match: RASF2 (Ras association domain-containing protein 2 OS=Homo sapiens GN=RASSF2 PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 3.141e-33 Identity = 90/299 (30.10%), Postives = 156/299 (52.17%), Query Frame = 1
Query: 2056 SLIPKLRVYNTYYSQKPCQISCREINDKFVLEGVIKVYWGLRSPVTLA---DSE------VSHYWKH----------FQPDDGTKRLDNTENVPPKNMRQPP--------PHKHDNKYKYKRKESSGSPSNG------DGPKRRLGCSVCNNSIYNTEIVTSFIPPYGTPTTLRVTNHVTVPIVIDMLLKKFQIRDNRKRFSLYTVYESGGQRRLRNDSFPLLSRVNLGPCEDVAKLFIMDTADQKEITHEVAQYINFNSSVLETFVKKFHXXXXXXXXXXXXKYKDYKELLMKRIGEF 2853
L+ L+ YN YY + Q+ RE D+F++EG++ + WGLR P+ L D+E S W +P K + + PP+ + P P + D + + G G D + R N YN + + F P YG+ T +R+ + +T P V+ +LL KF+I ++ + F+LY V+ SG +++L+ +PL++R+ GPCE ++K+F+M+ +E+T++VAQYI F VL++F++K EEE+REV+++ KY + ++ +R+ E
Sbjct: 22 ELLLHLKTYNLYYEGQNLQLRHREEEDEFIVEGLLNISWGLRRPIRLQMQDDNERIRPPPSSSSWHSGCNLGAQGTTLKPLTVPKVQISEVDAPPEGDQMPSSTDSRGLKPLQEDTPQLMRTRSDVGVRRRGNVRTPSDQRRIRRHRFSINGHFYNHK-TSVFTPAYGSVTNVRINSTMTTPQVLKLLLNKFKIENSAEEFALYVVHTSGEKQKLKATDYPLIARILQGPCEQISKVFLMEKDQVEEVTYDVAQYIKFEMPVLKSFIQKLQEEEDREVKKLMRKYTVLRLMIRQRLEEI 319 The following BLAST results are available for this feature:
BLAST of TCONS_00000267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.