TCONS_00000267-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000267-protein
Unique Name	TCONS_00000267-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	519

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000267-protein ID=TCONS_00000267-protein|Name=TCONS_00000267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
MPTSSSAVERKLQSKNGASIKRAKSFNSTSAPTSPSLLRRNKQPALEPRL
NKSAHLLMEAKKVAKELEERKKKGLLRPQSAKTMNLGSRFRSGSNGTNNG
LKKPSQSADNMLRSSAPVSLGKKILRRRAKSQHCRTPAQREHVNESDSDA
DEKDDNDLPTASFYGRLTPLRNSGRKRACAVPATGKSCFQCNKSLKSGFF
SEHGGLSYCNVPCYSSLFSSLREDDDAMEGISTLSNEQKSFRASLIPKLR
VYNTYYSQKPCQISCREINDKFVLEGVIKVYWGLRSPVTLADSEVSHYWK
HFQPDDGTKRLDNTENVPPKNMRQPPPHKHDNKYKYKRKESSGSPSNGDG
PKRRLGCSVCNNSIYNTEIVTSFIPPYGTPTTLRVTNHVTVPIVIDMLLK
KFQIRDNRKRFSLYTVYESGGQRRLRNDSFPLLSRVNLGPCEDVAKLFIM
DTADQKEITHEVAQYINFNSSVLETFVKKFHEEEEREVERIREKYKDYKE
LLMKRIGEFERNNNFSKEE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000144	XLOC_000144	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000267	TCONS_00000267	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000159	RA_dom
IPR011524	SARAH_dom
IPR029071	Ubiquitin-rel_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 50..77
None	No IPR available	COILS	Coil	Coil	coord: 481..501
None	No IPR available	GENE3D	3.10.20.90		coord: 329..460 e-value: 5.4E-12 score: 45.6
None	No IPR available	GENE3D	2.10.110.10		coord: 176..244 e-value: 9.0E-4 score: 18.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..354
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..168
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 188..220
IPR000159	Ras-associating (RA) domain	SMART	SM00314	RA_5	coord: 363..454 e-value: 3.5E-4 score: 29.9
IPR000159	Ras-associating (RA) domain	PFAM	PF00788	RA	coord: 381..448 e-value: 4.0E-8 score: 33.7
IPR000159	Ras-associating (RA) domain	PROSITE	PS50200	RA	coord: 363..454 score: 16.448
IPR011524	SARAH domain	PFAM	PF16517	Nore1-SARAH	coord: 468..505 e-value: 6.1E-8 score: 32.4
IPR011524	SARAH domain	PROSITE	PS50951	SARAH	coord: 462..509 score: 12.058
IPR029071	Ubiquitin-related domain	SUPERFAMILY	54236	Ubiquitin-like	coord: 379..438

Blast

[Close]

BLAST of TCONS_00000267-protein vs. Swiss-Prot (Human)
Match: RASF2 (Ras association domain-containing protein 2 OS=Homo sapiens GN=RASSF2 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.986e-41
Identity = 90/298 (30.20%), Postives = 156/298 (52.35%), Query Frame = 0

Query:  245 LIPKLRVYNTYYSQKPCQISCREINDKFVLEGVIKVYWGLRSPVTLA---DSE------VSHYWKH----------FQPDDGTKRLDNTENVPPKNMRQPP--------PHKHDNKYKYKRKESSGSPSNG------DGPKRRLGCSVCNNSIYNTEIVTSFIPPYGTPTTLRVTNHVTVPIVIDMLLKKFQIRDNRKRFSLYTVYESGGQRRLRNDSFPLLSRVNLGPCEDVAKLFIMDTADQKEITHEVAQYINFNSSVLETFVKKFHEEEEREVERIREKYKDYKELLMKRIGEF 509
            L+  L+ YN YY  +  Q+  RE  D+F++EG++ + WGLR P+ L    D+E       S  W             +P    K   +  + PP+  + P         P + D     + +   G    G      D  + R      N   YN +  + F P YG+ T +R+ + +T P V+ +LL KF+I ++ + F+LY V+ SG +++L+   +PL++R+  GPCE ++K+F+M+    +E+T++VAQYI F   VL++F++K  EEE+REV+++  KY   + ++ +R+ E 
Sbjct:   23 LLLHLKTYNLYYEGQNLQLRHREEEDEFIVEGLLNISWGLRRPIRLQMQDDNERIRPPPSSSSWHSGCNLGAQGTTLKPLTVPKVQISEVDAPPEGDQMPSSTDSRGLKPLQEDTPQLMRTRSDVGVRRRGNVRTPSDQRRIRRHRFSINGHFYNHK-TSVFTPAYGSVTNVRINSTMTTPQVLKLLLNKFKIENSAEEFALYVVHTSGEKQKLKATDYPLIARILQGPCEQISKVFLMEKDQVEEVTYDVAQYIKFEMPVLKSFIQKLQEEEDREVKKLMRKYTVLRLMIRQRLEEI 319

The following BLAST results are available for this feature:

BLAST of TCONS_00000267-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000267-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RASF2	5.986e-41	30.20	Ras association domain-containing protein 2 OS=Hom...	[more]

You are here

TCONS_00000267-protein (polypeptide) - C. hemisphaerica