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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000259 ID=TCONS_00000259|Name=TCONS_00000259|organism=Clytia hemisphaerica|type=transcript|length=3858bpRun BLAST on NCBI protein sequence of TCONS_00000259-protein >TCONS_00000259-protein ID=TCONS_00000259-protein|Name=TCONS_00000259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=601bp MTERLSSPKAREIQNINIHTKTLSSNLFKLRENDSLCDVTLISDGIEIRARun BLAST on NCBI transcript from alignment at sc0000001:2456748..2467092- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000259 ID=TCONS_00000259|Name=TCONS_00000259|organism=Clytia hemisphaerica|type=transcript|length=10345bp|location=Sequence derived from alignment at sc0000001:2456748..2467092- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:2456748..2467092- >TCONS_00000259 ID=TCONS_00000259|Name=TCONS_00000259|organism=Clytia hemisphaerica|type=CDS|length=18060bp|location=Sequence derived from alignment at sc0000001:2456748..2467092- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000259 vs. Swiss-Prot (Human)
Match: KLH20 (Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4) HSP 1 Score: 289.271 bits (739), Expect = 3.080e-84 Identity = 178/551 (32.30%), Postives = 275/551 (49.91%), Query Frame = 2
Query: 260 LRENDSLCDVTLISDGIEIRAHRVVLAACSEYFHAMFTSGMSETGKDEVPLKGVDTKSLTVLVNYAYTGVIFIDEVNVQTILETADLLQFQTAKSLCCDFIKEQLSTENCLDIFQFADVFHCDDVLSLSQGLFNKNWKKIVESESFSSINYHTFVKLISDDCLNIHQEGEVITMISKWIEADEINRKEKLFSLFQYVRWPYVDPIKLQEIKNQRLIVNNRLSLPEIDNVFSATEDYSD-VDKVVTLHSEDCSITPSLSMRHSYASWLYVLGGEQSFLMGMKSTEIFEMNTSTWSYGFSLNRPRTSFAAVAHGDKLYVIGGMCLGEKLRSVERYLEKEGRWKRLASLKNCKGDVKAAVIDDVVYVAGGSSGGEPACKYVERYDESNNQWTP-VACMKSRRRRFGLCQFKGKLYAFGGFQDSLGDLKACEVYDPEANIWESIASMKTNRCDLGVAVLSGYIYVAGGVNSYTGSINTVERYDPSSDQWTLCHPLSQARGGHSMVSYFGRLIVIGGMNSYMQTCRDAEWYNEVTDQWTSLAYTNVPRFG-SVAVV 1903
LR++ LCDV L+ +I AHRV+L+ACS YF AMFT ++E+ + EV ++ +D +++ +L+++AYT I ++E NVQT+L A LLQ + CC+F+K QL NCL I FAD C ++L ++ N+++++ESE F + + + +IS D LN+ E +V + W++ R+ +L + Q+VR P + P + +V S D + + E+ D VD+ A +L E+ + G ++ RPR G+ L+ +GG C G+ + SVERY + W+ +AS+ + V +V+DD++Y GG G VERYD NQW+ VA + R G+ G LYA GG QD + L E YDP+ N W +ASM T R + VAVL G++Y GG + T +NTVERY+P ++W P+ R Y + +GG + + AE YN T+QW+ + R G +AVV
Sbjct: 61 LRKHRELCDVVLVVGAKKIYAHRVILSACSPYFRAMFTGELAESRQTEVVIRDIDERAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSP---------KFLVGTVGS----DPLIKSDEECRDLVDE---------------------AKNYLLLPQERPLMQGPRT------------------RPRKPIRC---GEVLFAVGGWCSGDAISSVERYDPQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSS-YLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGG-QDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDG-TSPLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELS-SAERYNPRTNQWSPVVAMTSRRSGVGLAVV 552 HSP 2 Score: 107.842 bits (268), Expect = 8.015e-24 Identity = 65/191 (34.03%), Postives = 90/191 (47.12%), Query Frame = 2
Query: 1046 ASWLYVLGGEQSFLMGMKSTEIFEMNTSTWSYGFSLNRPRTSFAAVAHGDKLYVIGGMCLGEKLRSVERYLEKEGRWKRLASLKNCKGDVKAAVIDDVVYVAGGSSGGEPACKYVERYDESNNQWTPVACMKSRRRRFGLCQFKGKLYAFGGFQDSLGDLKACEVYDPEANIWESIASMKTNRCDLGVAVL 1618
+LY +GG Q + + E ++ + W+ S++ R A G LY +GG L +VERY +E RW +A + + + AV D++Y GG ERY+ NQW+PV M SRR GL G+L A GGF D LK EV+DP+AN W M R GV V+
Sbjct: 412 GGFLYAVGG-QDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTT-ELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVGGF-DGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVI 599 The following BLAST results are available for this feature:
BLAST of TCONS_00000259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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